RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 MMP11P24347 488 aa20.57■□□□□ 0.88
CLN3-207ENST00000395653 HPDP32754 393 aaPredicted RBP20.57■□□□□ 0.88
CLN3-207ENST00000395653 POLE2P56282 527 aa20.57■□□□□ 0.88
CLN3-207ENST00000395653 MAT1AQ00266 395 aaKnown RBP20.57■□□□□ 0.88
CLN3-207ENST00000395653 KLC1Q07866 573 aa20.57■□□□□ 0.88
CLN3-207ENST00000395653 SYT16Q17RD7 645 aa20.57■□□□□ 0.88
CLN3-207ENST00000395653 LIPJQ5W064 366 aa20.57■□□□□ 0.88
CLN3-207ENST00000395653 GRHL2Q6ISB3 625 aa20.57■□□□□ 0.88
CLN3-207ENST00000395653 MED27Q6P2C8 311 aa20.57■□□□□ 0.88
CLN3-207ENST00000395653 SHISA6Q6ZSJ9 500 aa20.57■□□□□ 0.88
CLN3-207ENST00000395653 VN1R5Q7Z5H4 357 aa20.57■□□□□ 0.88
CLN3-207ENST00000395653 PPP1R32Q7Z5V6 425 aa20.57■□□□□ 0.88
CLN3-207ENST00000395653 CRB3Q9BUF7 120 aa20.57■□□□□ 0.88
CLN3-207ENST00000395653 C1QTNF3Q9BXJ4 246 aa20.57■□□□□ 0.88
CLN3-207ENST00000395653 ADNPQ9H2P0 1102 aa20.57■□□□□ 0.88
CLN3-207ENST00000395653 ACTR8Q9H981 624 aa20.57■□□□□ 0.88
CLN3-207ENST00000395653 FFAR3O14843 346 aa20.56■□□□□ 0.88
CLN3-207ENST00000395653 GPR42O15529 346 aa20.56■□□□□ 0.88
CLN3-207ENST00000395653 SMIM10L1P0DMW3 83 aa20.56■□□□□ 0.88
CLN3-207ENST00000395653 CRHR1P34998 444 aa20.56■□□□□ 0.88
CLN3-207ENST00000395653 CCT5P48643 541 aa20.56■□□□□ 0.88
CLN3-207ENST00000395653 ADPRMQ3LIE5 342 aa20.56■□□□□ 0.88
CLN3-207ENST00000395653 DEFB134Q4QY38 66 aa20.56■□□□□ 0.88
CLN3-207ENST00000395653 SOWAHCQ53LP3 525 aaPredicted RBP20.56■□□□□ 0.88
CLN3-207ENST00000395653 TOR1AIP1Q5JTV8 583 aa20.56■□□□□ 0.88
CLN3-207ENST00000395653 ZC3H7AQ8IWR0 971 aaKnown RBP20.56■□□□□ 0.88
CLN3-207ENST00000395653 OR51Q1Q8NH59 317 aa20.56■□□□□ 0.88
CLN3-207ENST00000395653 CCT6BQ92526 530 aa20.56■□□□□ 0.88
CLN3-207ENST00000395653 GAL3ST3Q96A11 431 aa20.56■□□□□ 0.88
CLN3-207ENST00000395653 SMIM10Q96HG1 83 aa20.56■□□□□ 0.88
CLN3-207ENST00000395653 TMEM109Q9BVC6 243 aa20.56■□□□□ 0.88
CLN3-207ENST00000395653 AICDAQ9GZX7 198 aa20.56■□□□□ 0.88
CLN3-207ENST00000395653 KLHL31Q9H511 634 aa20.56■□□□□ 0.88
CLN3-207ENST00000395653 CLK4Q9HAZ1 481 aaKnown RBP20.56■□□□□ 0.88
CLN3-207ENST00000395653 LGALS13Q9UHV8 139 aa20.56■□□□□ 0.88
CLN3-207ENST00000395653 TUBD1Q9UJT1 453 aa20.56■□□□□ 0.88
CLN3-207ENST00000395653 LRIT2A6NDA9 550 aa20.55■□□□□ 0.88
CLN3-207ENST00000395653 ARGFXA6NJG6 315 aa20.55■□□□□ 0.88
CLN3-207ENST00000395653 PEX12O00623 359 aa20.55■□□□□ 0.88
CLN3-207ENST00000395653 RDH16O75452 317 aa20.55■□□□□ 0.88
CLN3-207ENST00000395653 TBX6O95947 436 aaPredicted RBP20.55■□□□□ 0.88
CLN3-207ENST00000395653 FAM87AP0C7U9 286 aa20.55■□□□□ 0.88
CLN3-207ENST00000395653 SERPINB1P30740 379 aa20.55■□□□□ 0.88
CLN3-207ENST00000395653 RAB8AP61006 207 aa20.55■□□□□ 0.88
CLN3-207ENST00000395653 ATP1A4Q13733 1029 aa20.55■□□□□ 0.88
CLN3-207ENST00000395653 ADNP2Q6IQ32 1131 aa20.55■□□□□ 0.88
CLN3-207ENST00000395653 MED25Q71SY5 747 aa20.55■□□□□ 0.88
CLN3-207ENST00000395653 EXD3Q8N9H8 876 aa20.55■□□□□ 0.88
CLN3-207ENST00000395653 TMEM102Q8N9M5 508 aaPredicted RBP20.55■□□□□ 0.88
CLN3-207ENST00000395653 OR7G3Q8NG95 312 aa20.55■□□□□ 0.88
CLN3-207ENST00000395653 MS4A6EQ96DS6 147 aa20.55■□□□□ 0.88
CLN3-207ENST00000395653 NOL11Q9H8H0 719 aaKnown RBP20.55■□□□□ 0.88
CLN3-207ENST00000395653 HCN3Q9P1Z3 774 aa20.55■□□□□ 0.88
CLN3-207ENST00000395653 ADGRE2Q9UHX3 823 aa20.55■□□□□ 0.88
CLN3-207ENST00000395653 C3orf18Q9UK00 162 aa20.55■□□□□ 0.88
CLN3-207ENST00000395653 PLAAQ9Y263 795 aa20.55■□□□□ 0.88
CLN3-207ENST00000395653 TSC22D4Q9Y3Q8 395 aa20.55■□□□□ 0.88
CLN3-207ENST00000395653 PIEZO2Q9H5I5 2752 aa20.55■□□□□ 0.88
CLN3-207ENST00000395653 BMP10O95393 424 aa20.54■□□□□ 0.88
CLN3-207ENST00000395653 SFTPCP11686 197 aa20.54■□□□□ 0.88
CLN3-207ENST00000395653 KRT4P19013 534 aa20.54■□□□□ 0.88
CLN3-207ENST00000395653 IL10P22301 178 aa20.54■□□□□ 0.88
CLN3-207ENST00000395653 ATP5F1P24539 256 aaPredicted RBP20.54■□□□□ 0.88
CLN3-207ENST00000395653 HNRNPH1P31943 449 aaKnown RBP20.54■□□□□ 0.88
CLN3-207ENST00000395653 XCR1P46094 333 aa20.54■□□□□ 0.88
CLN3-207ENST00000395653 RRADP55042 308 aa20.54■□□□□ 0.88
CLN3-207ENST00000395653 HERVK_113P63132 956 aa20.54■□□□□ 0.88
CLN3-207ENST00000395653 SLC18A2Q05940 514 aa20.54■□□□□ 0.88
CLN3-207ENST00000395653 LY6DQ14210 128 aa20.54■□□□□ 0.88
CLN3-207ENST00000395653 LAPTM4BQ86VI4 370 aa20.54■□□□□ 0.88
CLN3-207ENST00000395653 MYLK4Q86YV6 388 aaPredicted RBP20.54■□□□□ 0.88
CLN3-207ENST00000395653 PRSS58Q8IYP2 241 aa20.54■□□□□ 0.88
CLN3-207ENST00000395653 L3MBTL4Q8NA19 623 aa20.54■□□□□ 0.88
CLN3-207ENST00000395653 ZNF483Q8TF39 744 aaPredicted RBP20.54■□□□□ 0.88
CLN3-207ENST00000395653 ZNF473Q8WTR7 871 aaKnown RBP20.54■□□□□ 0.88
CLN3-207ENST00000395653 SLC39A7Q92504 469 aa20.54■□□□□ 0.88
CLN3-207ENST00000395653 NTMT1Q9BV86 223 aa20.54■□□□□ 0.88
CLN3-207ENST00000395653 ERVK-6Q9BXR3 956 aa20.54■□□□□ 0.88
CLN3-207ENST00000395653 ING2Q9H160 280 aa20.54■□□□□ 0.88
CLN3-207ENST00000395653 ZBTB26Q9HCK0 441 aa20.54■□□□□ 0.88
CLN3-207ENST00000395653 P4HTMQ9NXG6 502 aa20.54■□□□□ 0.88
CLN3-207ENST00000395653 EMCNQ9ULC0 261 aa20.54■□□□□ 0.88
CLN3-207ENST00000395653 GRID1Q9ULK0 1009 aa20.54■□□□□ 0.88
CLN3-207ENST00000395653 PCDHGA11Q9Y5H2 935 aa20.54■□□□□ 0.88
CLN3-207ENST00000395653 HS3ST3B1Q9Y662 390 aa20.54■□□□□ 0.88
CLN3-207ENST00000395653 CCDC88CQ9P219 2028 aa20.54■□□□□ 0.88
CLN3-207ENST00000395653 ZNF860A6NHJ4 632 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 IDSB3KWA1 339 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 C4orf51C9J302 202 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 H0YIV9 168 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 AGPSO00116 658 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 COPEO14579 308 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 OR7A17O14581 309 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 PCDH17O14917 1159 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 DLX3O60479 287 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 CLDN9O95484 217 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 CYC1P08574 325 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 CCNG1P51959 295 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 KCNAB2Q13303 367 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 RBBP7Q16576 425 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms