RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 ATAT1Q5SQI0 421 aa13.77□□□□□ -0.2
RTF1-201ENST00000389629 FAM92BQ6ZTR7 304 aa13.77□□□□□ -0.2
RTF1-201ENST00000389629 FAM46DQ8NEK8 389 aa13.77□□□□□ -0.2
RTF1-201ENST00000389629 CNDP2Q96KP4 475 aaKnown RBP13.77□□□□□ -0.2
RTF1-201ENST00000389629 MKRN2Q9H000 416 aaKnown RBP13.77□□□□□ -0.2
RTF1-201ENST00000389629 DCAF13Q9NV06 445 aaKnown RBP13.77□□□□□ -0.2
RTF1-201ENST00000389629 MLXQ9UH92 298 aa13.77□□□□□ -0.2
RTF1-201ENST00000389629 ABCG2Q9UNQ0 655 aa13.77□□□□□ -0.2
RTF1-201ENST00000389629 TMEM98Q9Y2Y6 226 aa13.77□□□□□ -0.2
RTF1-201ENST00000389629 SOCS7O14512 581 aa13.77□□□□□ -0.21
RTF1-201ENST00000389629 HOXA2O43364 376 aa13.77□□□□□ -0.21
RTF1-201ENST00000389629 CNMDO75829 334 aa13.77□□□□□ -0.21
RTF1-201ENST00000389629 TCF3P15923 654 aa13.77□□□□□ -0.21
RTF1-201ENST00000389629 RYKP34925 604 aa13.77□□□□□ -0.21
RTF1-201ENST00000389629 SOX3P41225 446 aa13.77□□□□□ -0.21
RTF1-201ENST00000389629 PUDPQ08623 228 aa13.77□□□□□ -0.21
RTF1-201ENST00000389629 OTUD1Q5VV17 481 aaPredicted RBP13.77□□□□□ -0.21
RTF1-201ENST00000389629 USP50Q70EL3 339 aaPredicted RBP13.77□□□□□ -0.21
RTF1-201ENST00000389629 PIANPQ8IYJ0 282 aa13.77□□□□□ -0.21
RTF1-201ENST00000389629 ZNF655Q8N720 491 aaPredicted RBP13.77□□□□□ -0.21
RTF1-201ENST00000389629 C3orf58Q8NDZ4 430 aa13.77□□□□□ -0.21
RTF1-201ENST00000389629 GEMIN6Q8WXD5 167 aaKnown RBP13.77□□□□□ -0.21
RTF1-201ENST00000389629 NECTIN4Q96NY8 510 aa13.77□□□□□ -0.21
RTF1-201ENST00000389629 UHRF1Q96T88 793 aaPredicted RBP13.77□□□□□ -0.21
RTF1-201ENST00000389629 CCM2Q9BSQ5 444 aa13.77□□□□□ -0.21
RTF1-201ENST00000389629 SPATA5L1Q9BVQ7 753 aa13.77□□□□□ -0.21
RTF1-201ENST00000389629 RNF121Q9H920 327 aa13.77□□□□□ -0.21
RTF1-201ENST00000389629 N6AMT1Q9Y5N5 214 aa13.77□□□□□ -0.21
RTF1-201ENST00000389629 GON4LQ3T8J9 2241 aa13.77□□□□□ -0.21
RTF1-201ENST00000389629 PCDH7O60245 1069 aa13.77□□□□□ -0.21
RTF1-201ENST00000389629 JUNBP17275 347 aaPredicted RBP13.77□□□□□ -0.21
RTF1-201ENST00000389629 HRH2P25021 359 aa13.77□□□□□ -0.21
RTF1-201ENST00000389629 NTSP30990 170 aa13.77□□□□□ -0.21
RTF1-201ENST00000389629 DEFB128Q7Z7B8 93 aa13.77□□□□□ -0.21
RTF1-201ENST00000389629 TOMM5Q8N4H5 51 aa13.77□□□□□ -0.21
RTF1-201ENST00000389629 SOCS4Q8WXH5 440 aa13.77□□□□□ -0.21
RTF1-201ENST00000389629 ASB15Q8WXK1 588 aa13.77□□□□□ -0.21
RTF1-201ENST00000389629 PSKH2Q96QS6 385 aa13.77□□□□□ -0.21
RTF1-201ENST00000389629 MAGIXQ9H6Y5 334 aa13.77□□□□□ -0.21
RTF1-201ENST00000389629 ELAC1Q9H777 363 aaKnown RBP13.77□□□□□ -0.21
RTF1-201ENST00000389629 ARNT2Q9HBZ2 717 aa13.77□□□□□ -0.21
RTF1-201ENST00000389629 STARD7Q9NQZ5 370 aa13.77□□□□□ -0.21
RTF1-201ENST00000389629 RABL2AQ9UBK7 228 aaPredicted RBP13.77□□□□□ -0.21
RTF1-201ENST00000389629 CDK5RAP2Q96SN8 1893 aa13.77□□□□□ -0.21
RTF1-201ENST00000389629 DNAJC25-GNG10A0A024R161 153 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 IRGMA1A4Y4 181 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 SLC38A8A6NNN8 435 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 FAM155AB1AL88 458 aaPredicted RBP13.76□□□□□ -0.21
RTF1-201ENST00000389629 C8GP07360 202 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 SELENBP1Q13228 472 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 ADAM15Q13444 863 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 ZNF697Q5TEC3 545 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 SLC24A5Q71RS6 500 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 SCD5Q86SK9 330 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 GTPBP2Q9BX10 602 aaKnown RBP13.76□□□□□ -0.21
RTF1-201ENST00000389629 TSSK6Q9BXA6 273 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 SLITRK2Q9H156 845 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 ENAMQ9NRM1 1142 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 SPG21Q9NZD8 308 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 ENTPD4Q9Y227 616 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 SOBPA7XYQ1 873 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 MEN1O00255 615 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 PCDH1Q08174 1060 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 CBLBQ13191 982 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 VASH1Q7L8A9 365 aaPredicted RBP13.76□□□□□ -0.21
RTF1-201ENST00000389629 VWA5B2Q8N398 1253 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 OR10H4Q8NGA5 316 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 ASB12Q8WXK4 309 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 ING5Q8WYH8 240 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 SLC9A6Q92581 669 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 GTF2H4Q92759 462 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 RAD51AP1Q96B01 352 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 COMMD9Q9P000 198 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 STRCP1A6NGW2 1772 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 NUPL2O15504 423 aaKnown RBP13.76□□□□□ -0.21
RTF1-201ENST00000389629 PDPK1O15530 556 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 IFNA16P05015 189 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 CELP19835 753 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 NUP62P37198 522 aaPredicted RBP13.76□□□□□ -0.21
RTF1-201ENST00000389629 GP2P55259 537 aaKnown RBP13.76□□□□□ -0.21
RTF1-201ENST00000389629 PRSS55Q6UWB4 352 aaPredicted RBP13.76□□□□□ -0.21
RTF1-201ENST00000389629 OR2T11Q8NH01 316 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 TNFAIP8L1Q8WVP5 186 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 PCNPQ8WW12 178 aaKnown RBP13.76□□□□□ -0.21
RTF1-201ENST00000389629 USP7Q93009 1102 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 TXNDC15Q96J42 360 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 FAM25EA8MYX2 175 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 TNFRSF10AO00220 468 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 ACSL1P33121 698 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 NOXRED1Q6NXP6 359 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 XKRXQ6PP77 449 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 CLECL1Q8IZS7 167 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 CD200R1Q8TD46 325 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 KCNN1Q92952 543 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 ARMC5Q96C12 935 aa13.76□□□□□ -0.21
RTF1-201ENST00000389629 TARM1B6A8C7 271 aa13.75□□□□□ -0.21
RTF1-201ENST00000389629 GPR39O43194 453 aa13.75□□□□□ -0.21
RTF1-201ENST00000389629 TGFB1P01137 390 aa13.75□□□□□ -0.21
RTF1-201ENST00000389629 GKP32189 559 aa13.75□□□□□ -0.21
RTF1-201ENST00000389629 CTU2Q2VPK5 515 aaKnown RBP13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms