RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 FKBP9O95302 570 aa12.84□□□□□ -0.35
CCDC3-202ENST00000378839 MAP2K4P45985 399 aa12.84□□□□□ -0.35
CCDC3-202ENST00000378839 TPD52P55327 224 aaPredicted RBP12.84□□□□□ -0.35
CCDC3-202ENST00000378839 IL5RAQ01344 420 aa12.84□□□□□ -0.35
CCDC3-202ENST00000378839 EMX1Q04741 257 aaPredicted RBP12.84□□□□□ -0.35
CCDC3-202ENST00000378839 SPIN4Q56A73 249 aa12.84□□□□□ -0.35
CCDC3-202ENST00000378839 CAPN13Q6MZZ7 669 aaPredicted RBP12.84□□□□□ -0.35
CCDC3-202ENST00000378839 TRMT11Q7Z4G4 463 aaKnown RBP12.84□□□□□ -0.35
CCDC3-202ENST00000378839 MMAAQ8IVH4 418 aaKnown RBP12.84□□□□□ -0.35
CCDC3-202ENST00000378839 OR5AK3PQ8NH89 298 aa12.84□□□□□ -0.35
CCDC3-202ENST00000378839 CHFRQ96EP1 664 aa12.84□□□□□ -0.35
CCDC3-202ENST00000378839 CNDP2Q96KP4 475 aaKnown RBP12.84□□□□□ -0.35
CCDC3-202ENST00000378839 FUNDC2Q9BWH2 189 aa12.84□□□□□ -0.35
CCDC3-202ENST00000378839 TMEM245Q9H330 911 aa12.84□□□□□ -0.35
CCDC3-202ENST00000378839 TRIM39Q9HCM9 518 aa12.84□□□□□ -0.35
CCDC3-202ENST00000378839 ATP6V1HQ9UI12 483 aa12.84□□□□□ -0.35
CCDC3-202ENST00000378839 PCDHGA4Q9Y5G9 962 aa12.84□□□□□ -0.35
CCDC3-202ENST00000378839 MGAT4DA6NG13 374 aa12.83□□□□□ -0.35
CCDC3-202ENST00000378839 GRXCR1A8MXD5 290 aa12.83□□□□□ -0.35
CCDC3-202ENST00000378839 TNFRSF21O75509 655 aa12.83□□□□□ -0.35
CCDC3-202ENST00000378839 FURINP09958 794 aa12.83□□□□□ -0.35
CCDC3-202ENST00000378839 DNAJA1P31689 397 aaKnown RBP12.83□□□□□ -0.35
CCDC3-202ENST00000378839 NUP107P57740 925 aa12.83□□□□□ -0.35
CCDC3-202ENST00000378839 ST8SIA6P61647 398 aa12.83□□□□□ -0.35
CCDC3-202ENST00000378839 EPS8Q12929 822 aa12.83□□□□□ -0.35
CCDC3-202ENST00000378839 SPCS2Q15005 226 aa12.83□□□□□ -0.35
CCDC3-202ENST00000378839 FAM109BQ6ICB4 259 aaPredicted RBP12.83□□□□□ -0.35
CCDC3-202ENST00000378839 C16orf78Q8WTQ4 265 aa12.83□□□□□ -0.35
CCDC3-202ENST00000378839 FAR1Q8WVX9 515 aa12.83□□□□□ -0.35
CCDC3-202ENST00000378839 FOPNLQ96NB1 174 aa12.83□□□□□ -0.35
CCDC3-202ENST00000378839 OR52A5Q9H2C5 316 aa12.83□□□□□ -0.35
CCDC3-202ENST00000378839 THUMPD1Q9NXG2 353 aaKnown RBP12.83□□□□□ -0.35
CCDC3-202ENST00000378839 SAMHD1Q9Y3Z3 626 aaKnown RBP12.83□□□□□ -0.35
CCDC3-202ENST00000378839 GMEB1Q9Y692 573 aa12.83□□□□□ -0.35
CCDC3-202ENST00000378839 CFAP20Q9Y6A4 193 aaKnown RBP12.83□□□□□ -0.35
CCDC3-202ENST00000378839 SOBPA7XYQ1 873 aa12.83□□□□□ -0.36
CCDC3-202ENST00000378839 RNASET2O00584 256 aaKnown RBP12.83□□□□□ -0.36
CCDC3-202ENST00000378839 SLC9A3R1O14745 358 aaPredicted RBP12.83□□□□□ -0.36
CCDC3-202ENST00000378839 MYO1DO94832 1006 aa12.83□□□□□ -0.36
CCDC3-202ENST00000378839 PRNPP04156 253 aa12.83□□□□□ -0.36
CCDC3-202ENST00000378839 KLK1P06870 262 aa12.83□□□□□ -0.36
CCDC3-202ENST00000378839 ITGA1P56199 1179 aa12.83□□□□□ -0.36
CCDC3-202ENST00000378839 GABARAPL2P60520 117 aa12.83□□□□□ -0.36
CCDC3-202ENST00000378839 VEZF1Q14119 521 aa12.83□□□□□ -0.36
CCDC3-202ENST00000378839 FAHD1Q6P587 224 aa12.83□□□□□ -0.36
CCDC3-202ENST00000378839 NXPE4Q6UWF7 544 aa12.83□□□□□ -0.36
CCDC3-202ENST00000378839 CACUL1Q86Y37 369 aa12.83□□□□□ -0.36
CCDC3-202ENST00000378839 TMIEQ8NEW7 156 aa12.83□□□□□ -0.36
CCDC3-202ENST00000378839 ACAT2Q9BWD1 397 aa12.83□□□□□ -0.36
CCDC3-202ENST00000378839 REEP4Q9H6H4 257 aa12.83□□□□□ -0.36
CCDC3-202ENST00000378839 NDRG4Q9ULP0 352 aaKnown RBP12.83□□□□□ -0.36
CCDC3-202ENST00000378839 COQ9O75208 318 aa12.83□□□□□ -0.36
CCDC3-202ENST00000378839 FPR1P21462 350 aa12.83□□□□□ -0.36
CCDC3-202ENST00000378839 ACVR2AP27037 513 aa12.83□□□□□ -0.36
CCDC3-202ENST00000378839 TTKP33981 857 aa12.83□□□□□ -0.36
CCDC3-202ENST00000378839 ASMTP46597 345 aa12.83□□□□□ -0.36
CCDC3-202ENST00000378839 OR1E2P47887 323 aa12.83□□□□□ -0.36
CCDC3-202ENST00000378839 PNLIPRP1P54315 467 aa12.83□□□□□ -0.36
CCDC3-202ENST00000378839 TMBIM6P55061 237 aa12.83□□□□□ -0.36
CCDC3-202ENST00000378839 TAS2R50P59544 299 aa12.83□□□□□ -0.36
CCDC3-202ENST00000378839 PDE7AQ13946 482 aa12.83□□□□□ -0.36
CCDC3-202ENST00000378839 ERICH5Q6P6B1 374 aa12.83□□□□□ -0.36
CCDC3-202ENST00000378839 PIWIL3Q7Z3Z3 882 aaKnown RBP12.83□□□□□ -0.36
CCDC3-202ENST00000378839 APH1BQ8WW43 257 aa12.83□□□□□ -0.36
CCDC3-202ENST00000378839 SLC5A11Q8WWX8 675 aa12.83□□□□□ -0.36
CCDC3-202ENST00000378839 METTL2AQ96IZ6 378 aaKnown RBP12.83□□□□□ -0.36
CCDC3-202ENST00000378839 ABCG4Q9H172 646 aa12.83□□□□□ -0.36
CCDC3-202ENST00000378839 RLIMQ9NVW2 624 aa12.83□□□□□ -0.36
CCDC3-202ENST00000378839 RPS6KA6Q9UK32 745 aa12.83□□□□□ -0.36
CCDC3-202ENST00000378839 NUP210Q8TEM1 1887 aaPredicted RBP12.83□□□□□ -0.36
CCDC3-202ENST00000378839 FOXE1O00358 373 aaPredicted RBP12.82□□□□□ -0.36
CCDC3-202ENST00000378839 ZBTB11O95625 1053 aaPredicted RBP12.82□□□□□ -0.36
CCDC3-202ENST00000378839 ADH1CP00326 375 aa12.82□□□□□ -0.36
CCDC3-202ENST00000378839 IL12RB1P42701 662 aa12.82□□□□□ -0.36
CCDC3-202ENST00000378839 MASP1P48740 699 aa12.82□□□□□ -0.36
CCDC3-202ENST00000378839 EEF1A2Q05639 463 aaKnown RBP12.82□□□□□ -0.36
CCDC3-202ENST00000378839 FPGSQ05932 587 aa12.82□□□□□ -0.36
CCDC3-202ENST00000378839 ZNF763Q0D2J5 394 aa12.82□□□□□ -0.36
CCDC3-202ENST00000378839 FAM71E1Q6IPT2 247 aa12.82□□□□□ -0.36
CCDC3-202ENST00000378839 TAMM41Q96BW9 452 aa12.82□□□□□ -0.36
CCDC3-202ENST00000378839 LINC00615Q96LM1 132 aaPredicted RBP12.82□□□□□ -0.36
CCDC3-202ENST00000378839 NODALQ96S42 347 aa12.82□□□□□ -0.36
CCDC3-202ENST00000378839 ARMC7Q9H6L4 198 aa12.82□□□□□ -0.36
CCDC3-202ENST00000378839 NDUFAF4Q9P032 175 aa12.82□□□□□ -0.36
CCDC3-202ENST00000378839 PCDHGA10Q9Y5H3 936 aa12.82□□□□□ -0.36
CCDC3-202ENST00000378839 C2orf16Q68DN1 1984 aa12.82□□□□□ -0.36
CCDC3-202ENST00000378839 DOCK9Q9BZ29 2069 aa12.82□□□□□ -0.36
CCDC3-202ENST00000378839 WBP4O75554 376 aaKnown RBP12.82□□□□□ -0.36
CCDC3-202ENST00000378839 JRKO75564 520 aa12.82□□□□□ -0.36
CCDC3-202ENST00000378839 HPCAL1P37235 193 aa12.82□□□□□ -0.36
CCDC3-202ENST00000378839 P2RY2P41231 377 aa12.82□□□□□ -0.36
CCDC3-202ENST00000378839 CRATP43155 626 aa12.82□□□□□ -0.36
CCDC3-202ENST00000378839 RAD23AP54725 363 aa12.82□□□□□ -0.36
CCDC3-202ENST00000378839 DPTQ07507 201 aa12.82□□□□□ -0.36
CCDC3-202ENST00000378839 CTF1Q16619 201 aa12.82□□□□□ -0.36
CCDC3-202ENST00000378839 RTL10Q7L3V2 364 aa12.82□□□□□ -0.36
CCDC3-202ENST00000378839 ADGRF3Q8IZF5 1079 aa12.82□□□□□ -0.36
CCDC3-202ENST00000378839 OR2L2Q8NH16 312 aa12.82□□□□□ -0.36
CCDC3-202ENST00000378839 GOT1L1Q8NHS2 421 aaPredicted RBP12.82□□□□□ -0.36
CCDC3-202ENST00000378839 WFIKKN2Q8TEU8 576 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms