RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 RAB17Q9H0T7 212 aa20.45■□□□□ 0.86
CCDC28B-201ENST00000373602 HIVEP3Q5T1R4 2406 aa20.45■□□□□ 0.86
CCDC28B-201ENST00000373602 CPAMD8Q8IZJ3 1885 aa20.44■□□□□ 0.86
CCDC28B-201ENST00000373602 E2F3O00716 465 aa20.44■□□□□ 0.86
CCDC28B-201ENST00000373602 PHGDHO43175 533 aaKnown RBP20.44■□□□□ 0.86
CCDC28B-201ENST00000373602 CHST10O43529 356 aa20.44■□□□□ 0.86
CCDC28B-201ENST00000373602 CDC123O75794 336 aaPredicted RBP20.44■□□□□ 0.86
CCDC28B-201ENST00000373602 WDR47O94967 919 aa20.44■□□□□ 0.86
CCDC28B-201ENST00000373602 DDAH2O95865 285 aa20.44■□□□□ 0.86
CCDC28B-201ENST00000373602 WDPCPO95876 746 aa20.44■□□□□ 0.86
CCDC28B-201ENST00000373602 B3GALT4O96024 378 aa20.44■□□□□ 0.86
CCDC28B-201ENST00000373602 FHP07954 510 aa20.44■□□□□ 0.86
CCDC28B-201ENST00000373602 RNF224P0DH78 156 aa20.44■□□□□ 0.86
CCDC28B-201ENST00000373602 SMIM10L1P0DMW3 83 aa20.44■□□□□ 0.86
CCDC28B-201ENST00000373602 GNAZP19086 355 aa20.44■□□□□ 0.86
CCDC28B-201ENST00000373602 GDF5P43026 501 aa20.44■□□□□ 0.86
CCDC28B-201ENST00000373602 HYAL2Q12891 473 aa20.44■□□□□ 0.86
CCDC28B-201ENST00000373602 RBBP5Q15291 538 aaKnown RBP20.44■□□□□ 0.86
CCDC28B-201ENST00000373602 BTBD16Q32M84 506 aa20.44■□□□□ 0.86
CCDC28B-201ENST00000373602 SPATA6LQ8N4H0 392 aa20.44■□□□□ 0.86
CCDC28B-201ENST00000373602 FBXO25Q8TCJ0 367 aa20.44■□□□□ 0.86
CCDC28B-201ENST00000373602 TBC1D20Q96BZ9 403 aa20.44■□□□□ 0.86
CCDC28B-201ENST00000373602 SMIM10Q96HG1 83 aa20.44■□□□□ 0.86
CCDC28B-201ENST00000373602 CLK4Q9HAZ1 481 aaKnown RBP20.44■□□□□ 0.86
CCDC28B-201ENST00000373602 ERRFI1Q9UJM3 462 aaPredicted RBP20.44■□□□□ 0.86
CCDC28B-201ENST00000373602 SCN2AQ99250 2005 aa20.43■□□□□ 0.86
CCDC28B-201ENST00000373602 URADA6NGE7 173 aa20.43■□□□□ 0.86
CCDC28B-201ENST00000373602 MAGEB17A8MXT2 336 aa20.43■□□□□ 0.86
CCDC28B-201ENST00000373602 SERPINA6P08185 405 aa20.43■□□□□ 0.86
CCDC28B-201ENST00000373602 CCDC166P0CW27 439 aa20.43■□□□□ 0.86
CCDC28B-201ENST00000373602 C1GALT1C1LP0DN25 315 aa20.43■□□□□ 0.86
CCDC28B-201ENST00000373602 CD1DP15813 335 aa20.43■□□□□ 0.86
CCDC28B-201ENST00000373602 STMN1P16949 149 aa20.43■□□□□ 0.86
CCDC28B-201ENST00000373602 JAK1P23458 1154 aa20.43■□□□□ 0.86
CCDC28B-201ENST00000373602 OLR1P78380 273 aa20.43■□□□□ 0.86
CCDC28B-201ENST00000373602 ABRAXAS2Q15018 415 aa20.43■□□□□ 0.86
CCDC28B-201ENST00000373602 TRADDQ15628 312 aa20.43■□□□□ 0.86
CCDC28B-201ENST00000373602 NSDHLQ15738 373 aa20.43■□□□□ 0.86
CCDC28B-201ENST00000373602 ZKSCAN8Q15776 578 aaPredicted RBP20.43■□□□□ 0.86
CCDC28B-201ENST00000373602 SFT2D3Q587I9 215 aa20.43■□□□□ 0.86
CCDC28B-201ENST00000373602 ABHD17BQ5VST6 288 aa20.43■□□□□ 0.86
CCDC28B-201ENST00000373602 H3F3CQ6NXT2 135 aa20.43■□□□□ 0.86
CCDC28B-201ENST00000373602 FAM180AQ6UWF9 173 aa20.43■□□□□ 0.86
CCDC28B-201ENST00000373602 ZDHHC24Q6UX98 284 aa20.43■□□□□ 0.86
CCDC28B-201ENST00000373602 SLCO4C1Q6ZQN7 724 aa20.43■□□□□ 0.86
CCDC28B-201ENST00000373602 TCAIMQ8N3R3 496 aa20.43■□□□□ 0.86
CCDC28B-201ENST00000373602 CREB3L4Q8TEY5 395 aa20.43■□□□□ 0.86
CCDC28B-201ENST00000373602 TSLPQ969D9 159 aa20.43■□□□□ 0.86
CCDC28B-201ENST00000373602 STMN3Q9NZ72 180 aa20.43■□□□□ 0.86
CCDC28B-201ENST00000373602 TEKT2Q9UIF3 430 aa20.43■□□□□ 0.86
CCDC28B-201ENST00000373602 SPTAN1Q13813 2472 aaKnown RBP20.42■□□□□ 0.86
CCDC28B-201ENST00000373602 NCF1BA6NI72 391 aaPredicted RBP20.42■□□□□ 0.86
CCDC28B-201ENST00000373602 NCF1CA8MVU1 366 aaPredicted RBP20.42■□□□□ 0.86
CCDC28B-201ENST00000373602 H2AFYO75367 372 aaKnown RBP20.42■□□□□ 0.86
CCDC28B-201ENST00000373602 F10P00742 488 aa20.42■□□□□ 0.86
CCDC28B-201ENST00000373602 EDN3P14138 238 aa20.42■□□□□ 0.86
CCDC28B-201ENST00000373602 NCF1P14598 390 aaPredicted RBP20.42■□□□□ 0.86
CCDC28B-201ENST00000373602 GGT5P36269 586 aa20.42■□□□□ 0.86
CCDC28B-201ENST00000373602 MAGEA4P43358 317 aa20.42■□□□□ 0.86
CCDC28B-201ENST00000373602 RAB8AP61006 207 aa20.42■□□□□ 0.86
CCDC28B-201ENST00000373602 ATP6V0D1P61421 351 aa20.42■□□□□ 0.86
CCDC28B-201ENST00000373602 ZNF33BQ06732 778 aa20.42■□□□□ 0.86
CCDC28B-201ENST00000373602 INAQ16352 499 aa20.42■□□□□ 0.86
CCDC28B-201ENST00000373602 EXT1Q16394 746 aa20.42■□□□□ 0.86
CCDC28B-201ENST00000373602 CDKL4Q5MAI5 379 aa20.42■□□□□ 0.86
CCDC28B-201ENST00000373602 GRTP1Q5TC63 336 aa20.42■□□□□ 0.86
CCDC28B-201ENST00000373602 PAPD4Q6PIY7 484 aaKnown RBP20.42■□□□□ 0.86
CCDC28B-201ENST00000373602 CTAGE3PQ8IX95 158 aa20.42■□□□□ 0.86
CCDC28B-201ENST00000373602 BCORP1Q8N888 145 aa20.42■□□□□ 0.86
CCDC28B-201ENST00000373602 M1APQ8TC57 530 aa20.42■□□□□ 0.86
CCDC28B-201ENST00000373602 UBXN10Q96LJ8 280 aa20.42■□□□□ 0.86
CCDC28B-201ENST00000373602 SLX1AQ9BQ83 275 aa20.42■□□□□ 0.86
CCDC28B-201ENST00000373602 TMEM79Q9BSE2 394 aa20.42■□□□□ 0.86
CCDC28B-201ENST00000373602 CAPS2Q9BXY5 557 aa20.42■□□□□ 0.86
CCDC28B-201ENST00000373602 AICDAQ9GZX7 198 aa20.42■□□□□ 0.86
CCDC28B-201ENST00000373602 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP20.42■□□□□ 0.86
CCDC28B-201ENST00000373602 KLHL31Q9H511 634 aa20.42■□□□□ 0.86
CCDC28B-201ENST00000373602 MMP25Q9NPA2 562 aa20.42■□□□□ 0.86
CCDC28B-201ENST00000373602 GPRC5BQ9NZH0 403 aa20.42■□□□□ 0.86
CCDC28B-201ENST00000373602 POLEQ07864 2286 aa20.42■□□□□ 0.86
CCDC28B-201ENST00000373602 ICE1Q9Y2F5 2266 aa20.42■□□□□ 0.86
CCDC28B-201ENST00000373602 PRRC2CQ9Y520 2896 aaKnown RBP20.41■□□□□ 0.86
CCDC28B-201ENST00000373602 WIPF3A6NGB9 483 aa20.41■□□□□ 0.86
CCDC28B-201ENST00000373602 A8MUI8 341 aa20.41■□□□□ 0.86
CCDC28B-201ENST00000373602 TAPBPO15533 448 aa20.41■□□□□ 0.86
CCDC28B-201ENST00000373602 SPRP35270 261 aaPredicted RBP20.41■□□□□ 0.86
CCDC28B-201ENST00000373602 HNF4AP41235 474 aa20.41■□□□□ 0.86
CCDC28B-201ENST00000373602 RAB10P61026 200 aa20.41■□□□□ 0.86
CCDC28B-201ENST00000373602 ACTN3Q08043 901 aaPredicted RBP20.41■□□□□ 0.86
CCDC28B-201ENST00000373602 OR4D1Q15615 310 aa20.41■□□□□ 0.86
CCDC28B-201ENST00000373602 KBTBD12Q3ZCT8 623 aa20.41■□□□□ 0.86
CCDC28B-201ENST00000373602 CCDC25Q86WR0 208 aa20.41■□□□□ 0.86
CCDC28B-201ENST00000373602 GPSM1Q86YR5 675 aa20.41■□□□□ 0.86
CCDC28B-201ENST00000373602 ZNF354BQ96LW1 612 aa20.41■□□□□ 0.86
CCDC28B-201ENST00000373602 LPAR4Q99677 370 aa20.41■□□□□ 0.86
CCDC28B-201ENST00000373602 WWOXQ9NZC7 414 aa20.41■□□□□ 0.86
CCDC28B-201ENST00000373602 COPG2Q9UBF2 871 aa20.41■□□□□ 0.86
CCDC28B-201ENST00000373602 PLEKHB1Q9UF11 243 aaPredicted RBP20.41■□□□□ 0.86
CCDC28B-201ENST00000373602 SLC5A6Q9Y289 635 aa20.41■□□□□ 0.86
CCDC28B-201ENST00000373602 SPTBN1Q01082 2364 aaKnown RBP20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms