RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 IFT27Q9BW83 186 aa11.19□□□□□ -0.62
SYNE1-204ENST00000367248 CHMP1AQ9HD42 196 aaPredicted RBP11.19□□□□□ -0.62
SYNE1-204ENST00000367248 SPO11Q9Y5K1 396 aa11.19□□□□□ -0.62
SYNE1-204ENST00000367248 TRBC2A0A5B9 178 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 PRKD3O94806 890 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 PEX2P28328 305 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 SNTA1Q13424 505 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 ATP1A4Q13733 1029 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 TRAF7Q6Q0C0 670 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 B3GNT6Q6ZMB0 384 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 PAQR9Q6ZVX9 377 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 OR5K1Q8NHB7 308 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 MKS1Q9NXB0 559 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 PISDQ9UG56 409 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 EIF1AYO14602 144 aaKnown RBP11.18□□□□□ -0.62
SYNE1-204ENST00000367248 SMAD6O43541 496 aaKnown RBP11.18□□□□□ -0.62
SYNE1-204ENST00000367248 HOXD8P13378 290 aaPredicted RBP11.18□□□□□ -0.62
SYNE1-204ENST00000367248 FUT4P22083 530 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 CD68P34810 354 aaPredicted RBP11.18□□□□□ -0.62
SYNE1-204ENST00000367248 CAPGP40121 348 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 DIO3P55073 304 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 GPR107Q5VW38 600 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 SPATC1Q76KD6 591 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 ZNF527Q8NB42 609 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 ZNF689Q96CS4 500 aaPredicted RBP11.18□□□□□ -0.62
SYNE1-204ENST00000367248 WDR77Q9BQA1 342 aaPredicted RBP11.18□□□□□ -0.62
SYNE1-204ENST00000367248 SLC39A3Q9BRY0 314 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 PRTFDC1Q9NRG1 225 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 BAZ2AQ9UIF9 1905 aaKnown RBP11.18□□□□□ -0.62
SYNE1-204ENST00000367248 SEC14L5O43304 696 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 SLC6A4P31645 630 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 LIPJQ5W064 366 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 TANGO2Q6ICL3 276 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 KIAA1211LQ6NV74 962 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 VSTM5A8MXK1 200 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 RSL1D1O76021 490 aaKnown RBP11.18□□□□□ -0.62
SYNE1-204ENST00000367248 XRCC1P18887 633 aaPredicted RBP11.18□□□□□ -0.62
SYNE1-204ENST00000367248 CSNK1EP49674 416 aaKnown RBP11.18□□□□□ -0.62
SYNE1-204ENST00000367248 TARDBPQ13148 414 aaKnown RBP eCLIP11.18□□□□□ -0.62
SYNE1-204ENST00000367248 DPH7Q9BTV6 452 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 C11orf16Q9NQ32 467 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 RAB26Q9ULW5 256 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 CAPN5O15484 640 aaPredicted RBP11.18□□□□□ -0.62
SYNE1-204ENST00000367248 CHRM5P08912 532 aaPredicted RBP11.18□□□□□ -0.62
SYNE1-204ENST00000367248 RAB28P51157 221 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 ZNF41P51814 821 aaPredicted RBP11.18□□□□□ -0.62
SYNE1-204ENST00000367248 PDCD4Q53EL6 469 aaKnown RBP11.18□□□□□ -0.62
SYNE1-204ENST00000367248 ZBTB46Q86UZ6 589 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 CEP97Q8IW35 865 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 ADAMTS19Q8TE59 1207 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 EFHD2Q96C19 240 aaPredicted RBP11.18□□□□□ -0.62
SYNE1-204ENST00000367248 TBX5Q99593 518 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 PLGRKTQ9HBL7 147 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 CHD4Q14839 1912 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 E7ENX8 843 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 OR4D2P58180 307 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 VLDLRP98155 873 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 PUM1Q14671 1186 aaKnown RBP eCLIP11.18□□□□□ -0.62
SYNE1-204ENST00000367248 DECR1Q16698 335 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 NIPAL1Q6NVV3 410 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 KDELC1Q6UW63 502 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 SLC36A4Q6YBV0 504 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 HMGN2P46Q86SG4 172 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 ASPGQ86U10 573 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 TRIM73Q86UV7 250 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 RADILQ96JH8 1075 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 PADI2Q9Y2J8 665 aa11.18□□□□□ -0.62
SYNE1-204ENST00000367248 SNX4O95219 450 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 PRAMEF12O95522 483 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 BCHEP06276 602 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 FAM78AQ5JUQ0 283 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 AHSA2Q719I0 299 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 PEG10Q86TG7 708 aaKnown RBP11.17□□□□□ -0.62
SYNE1-204ENST00000367248 ARHGAP12Q8IWW6 846 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 OR5T3Q8NGG3 340 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 ZNF570Q96NI8 536 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 GRXCR2A6NFK2 248 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 CHST10O43529 356 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 RASGEF1AQ8N9B8 481 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 RFKQ969G6 155 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 COQ8BQ96D53 544 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 NSUN5Q96P11 429 aaKnown RBP11.17□□□□□ -0.62
SYNE1-204ENST00000367248 RNF38Q9H0F5 515 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 OARD1Q9Y530 152 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 PLD2O14939 933 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 PGRMC2O15173 223 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 KCNJ13O60928 360 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 IRS1P35568 1242 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 FAM189BP81408 668 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 MAPK14Q16539 360 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 OR6N1Q8NGY5 312 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 OR4C6Q8NH72 309 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 WDR60Q8WVS4 1066 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 MAP3K3Q99759 626 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 FANCFQ9NPI8 374 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 TVP23BQ9NYZ1 205 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 SPATA2Q9UM82 520 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 HNRNPA2B1P22626 353 aaKnown RBP11.17□□□□□ -0.62
SYNE1-204ENST00000367248 CLEC12AQ5QGZ9 265 aa11.17□□□□□ -0.62
SYNE1-204ENST00000367248 AMIGO1Q86WK6 493 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms