RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 SYT10Q6XYQ8 523 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.95□□□□□ -1.78
USH2A-202ENST00000366942 FAM83HQ6ZRV2 1179 aaPredicted RBP3.95□□□□□ -1.78
USH2A-202ENST00000366942 TBC1D10CQ8IV04 446 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 KIAA1958Q8N8K9 716 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 FBXO36Q8NEA4 188 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 OR4N2Q8NGD1 307 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 DQX1Q8TE96 717 aaKnown RBP3.95□□□□□ -1.78
USH2A-202ENST00000366942 EMID1Q96A84 441 aaPredicted RBP3.95□□□□□ -1.78
USH2A-202ENST00000366942 HRASLS5Q96KN8 279 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 RPL10LQ96L21 214 aaKnown RBP3.95□□□□□ -1.78
USH2A-202ENST00000366942 COPS4Q9BT78 406 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 GDAP2Q9NXN4 497 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 TAS2R7Q9NYW3 318 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 NLGN3Q9NZ94 848 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 KIAA1456Q9P272 454 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 TBX21Q9UL17 535 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 BTBD3Q9Y2F9 522 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 A0A0J9YY10 115 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 MEIOCA2RUB1 952 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 RIIAD1A6NNX1 92 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 MID1O15344 667 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 CDC123O75794 336 aaPredicted RBP3.95□□□□□ -1.78
USH2A-202ENST00000366942 TAL1P17542 331 aaPredicted RBP3.95□□□□□ -1.78
USH2A-202ENST00000366942 CLRN1P58418 232 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 ERVPABLB-1P60509 514 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 FMO1Q01740 532 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 GRIK2Q13002 908 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 CCDC142Q17RM4 750 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 SPANXN3Q5MJ09 141 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 ACAD10Q6JQN1 1059 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 LRIG3Q6UXM1 1119 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 ARMC8Q8IUR7 673 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 OR4S1Q8NGB4 309 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 PHOSPHO1Q8TCT1 267 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 STK32AQ8WU08 396 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 ZNF845Q96IR2 970 aaPredicted RBP3.95□□□□□ -1.78
USH2A-202ENST00000366942 DCUN1D5Q9BTE7 237 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 CFHR5Q9BXR6 569 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 DNTTIP1Q9H147 329 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 NXF5Q9H1B4 397 aaKnown RBP3.95□□□□□ -1.78
USH2A-202ENST00000366942 LRTM1Q9HBL6 345 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 PLGRKTQ9HBL7 147 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 PAK6Q9NQU5 681 aaPredicted RBP3.95□□□□□ -1.78
USH2A-202ENST00000366942 FGF21Q9NSA1 209 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 TNFRSF10DQ9UBN6 386 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 PRPF19Q9UMS4 504 aaKnown RBP3.95□□□□□ -1.78
USH2A-202ENST00000366942 DHDHQ9UQ10 334 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 MGAT4BQ9UQ53 548 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 SCML2Q9UQR0 700 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 AP4B1Q9Y6B7 739 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 LAMC1P11047 1609 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 CFAP65Q6ZU64 1925 aaKnown RBP3.95□□□□□ -1.78
USH2A-202ENST00000366942 A0A087X1B8 175 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 A0A0B4J203 849 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 SNX3O60493 162 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 MFAP3LO75121 409 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 GLRA3O75311 464 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 ESR1P03372 595 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 ZNF44P15621 663 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 CHN1P15882 459 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 GNB3P16520 340 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 ADRA1BP35368 520 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 PIK3CBP42338 1070 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 GZMKP49863 264 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 RING1Q06587 406 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 FRG1Q14331 258 aaKnown RBP3.95□□□□□ -1.78
USH2A-202ENST00000366942 HES1Q14469 280 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 IHHQ14623 411 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 FUT11Q495W5 492 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 DNAL1Q4LDG9 190 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 C1orf189Q5VU69 101 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 MRGPRGQ86SM5 289 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 SLC30A8Q8IWU4 369 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 PPIL6Q8IXY8 311 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 MICU2Q8IYU8 434 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 CATSPER1Q8NEC5 780 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 OR4L1Q8NH43 312 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 EEF1AKMT1Q8WVE0 214 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 NR4A3Q92570 626 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 MOAP1Q96BY2 351 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 DDIT4LQ96D03 193 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 COQ8BQ96D53 544 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 DPH3Q96FX2 82 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 SGCZQ96LD1 299 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 DIRC2Q96SL1 478 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 OSBPL3Q9H4L5 887 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 EXOSC4Q9NPD3 245 aaKnown RBP3.95□□□□□ -1.78
USH2A-202ENST00000366942 LPAR3Q9UBY5 353 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 WARS2Q9UGM6 360 aaKnown RBP3.95□□□□□ -1.78
USH2A-202ENST00000366942 DCDC2Q9UHG0 476 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 RAB21Q9UL25 225 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 BTRCQ9Y297 605 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 NFS1Q9Y697 457 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 PDLIM1O00151 329 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 AQP7O14520 342 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 TSPAN4O14817 238 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 PEX10O60683 326 aa3.95□□□□□ -1.78
USH2A-202ENST00000366942 RGS9O75916 674 aaPredicted RBP3.95□□□□□ -1.78
USH2A-202ENST00000366942 SAGP10523 405 aaPredicted RBP3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms