RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 RYKP34925 604 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 RORAP35398 523 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 MAGEA6P43360 314 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 TFF2Q03403 129 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 ADGRG6Q86SQ4 1221 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 SMRP1Q8NCR6 262 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 MRGPRX1Q96LB2 322 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 ZNF717Q9BY31 904 aaPredicted RBP9.77□□□□□ -0.85
USP54-201ENST00000339859 TREX1Q9NSU2 369 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 DLGAP4Q9Y2H0 992 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 CHRM5P08912 532 aaPredicted RBP9.77□□□□□ -0.85
USP54-201ENST00000339859 HNRNPH1P31943 449 aaKnown RBP9.77□□□□□ -0.85
USP54-201ENST00000339859 SERTAD2Q14140 314 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 GPR68Q15743 365 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 WSCD2Q2TBF2 565 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 RFX4Q33E94 735 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 AFMIDQ63HM1 303 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 OR5M3Q8NGP4 307 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 OR2L8Q8NGY9 312 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 OR5P2Q8WZ92 322 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 YIPF4Q9BSR8 244 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 ALG2Q9H553 416 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 EPHX3Q9H6B9 360 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 C14orf105Q9NVL8 296 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 GRXCR2A6NFK2 248 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 OPRD1P41143 372 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 CCT3P49368 545 aaKnown RBP9.77□□□□□ -0.85
USP54-201ENST00000339859 CDKN1CP49918 316 aaPredicted RBP9.77□□□□□ -0.85
USP54-201ENST00000339859 DOC2AQ14183 400 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 ADRM1Q16186 407 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 MCATQ8IVS2 390 aaKnown RBP9.77□□□□□ -0.85
USP54-201ENST00000339859 CEP97Q8IW35 865 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 NAT14Q8WUY8 206 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 ZNF347Q96SE7 839 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 EDEM2Q9BV94 578 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 RPF2Q9H7B2 306 aaKnown RBP9.77□□□□□ -0.85
USP54-201ENST00000339859 IKZF3Q9UKT9 509 aa9.77□□□□□ -0.85
USP54-201ENST00000339859 SLC9B1P1A6NJY1 282 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 HTRA2O43464 458 aaPredicted RBP9.76□□□□□ -0.85
USP54-201ENST00000339859 PCDHGA12O60330 932 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 CDC123O75794 336 aaPredicted RBP9.76□□□□□ -0.85
USP54-201ENST00000339859 PRSS56P0CW18 603 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 EFNA1P20827 205 aaPredicted RBP9.76□□□□□ -0.85
USP54-201ENST00000339859 SEMA3BQ13214 749 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 PCLAFQ15004 111 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 C14orf28Q4W4Y0 310 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 SLC9B1Q4ZJI4 515 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 OR4F3Q6IEY1 312 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 RBM44Q6ZP01 1051 aaKnown RBP9.76□□□□□ -0.85
USP54-201ENST00000339859 TICAM1Q8IUC6 712 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 DHRSXQ8N5I4 330 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 OR5K2Q8NHB8 316 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 CD200R1Q8TD46 325 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 NR4A3Q92570 626 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 CD180Q99467 661 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 TMEM168Q9H0V1 697 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 TRPV4Q9HBA0 871 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 C3orf18Q9UK00 162 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 CASP8AP2Q9UKL3 1982 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 TCRBV5S1A1TA0A578 114 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 VSTM5A8MXK1 200 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 AURKAO14965 403 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 NR2C1P13056 603 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 GSSP48637 474 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 POLE2P56282 527 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 PTSQ03393 145 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 PLCXD2Q0VAA5 305 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 SF3B4Q15427 424 aaKnown RBP eCLIP9.76□□□□□ -0.85
USP54-201ENST00000339859 ATG9BQ674R7 924 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 PEX11GQ96HA9 241 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 LPAR4Q99677 370 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 SEMA6AQ9H2E6 1030 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 ZDHHC2Q9UIJ5 367 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 KIAA1217Q5T5P2 1943 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 ZCWPW2A0A1B0GU75 182 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 SOX6P35712 828 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 TXNL4AP83876 142 aaKnown RBP9.76□□□□□ -0.85
USP54-201ENST00000339859 ID2Q02363 134 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 TAZQ16635 292 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 BCL7AQ4VC05 210 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 KLHL26Q53HC5 615 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 ABHD17BQ5VST6 288 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 ZFAND4Q86XD8 727 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 IL1RAPQ9NPH3 570 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 PTRH2Q9Y3E5 179 aaKnown RBP9.76□□□□□ -0.85
USP54-201ENST00000339859 MAU2Q9Y6X3 613 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 SBF1O95248 1867 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 ADAMDEC1O15204 470 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 OR6B1O95007 311 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 P04436 131 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 PORP16435 677 aaPredicted RBP9.76□□□□□ -0.85
USP54-201ENST00000339859 ATP4BP51164 291 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 CTSCP53634 463 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 MAZP56270 477 aaKnown RBP9.76□□□□□ -0.85
USP54-201ENST00000339859 SLC34A1Q06495 639 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 SMAD2Q15796 467 aaKnown RBP9.76□□□□□ -0.85
USP54-201ENST00000339859 KLHL24Q6TFL4 600 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 IL17RCQ8NAC3 791 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 IFI44Q8TCB0 444 aa9.76□□□□□ -0.85
USP54-201ENST00000339859 ASB15Q8WXK1 588 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms