RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 DEPDC1Q5TB30 811 aa21.09■□□□□ 0.97
SDC3-202ENST00000339394 YOD1Q5VVQ6 348 aaPredicted RBP21.09■□□□□ 0.97
SDC3-202ENST00000339394 KHDRBS2Q5VWX1 349 aaKnown RBP21.09■□□□□ 0.97
SDC3-202ENST00000339394 RHBDD2Q6NTF9 364 aa21.09■□□□□ 0.97
SDC3-202ENST00000339394 IGF2-ASQ6U949 168 aa21.09■□□□□ 0.97
SDC3-202ENST00000339394 TTLL10Q6ZVT0 673 aa21.09■□□□□ 0.97
SDC3-202ENST00000339394 CHSY3Q70JA7 882 aa21.09■□□□□ 0.97
SDC3-202ENST00000339394 ZCCHC10Q8TBK6 192 aa21.09■□□□□ 0.97
SDC3-202ENST00000339394 TWIST2Q8WVJ9 160 aa21.09■□□□□ 0.97
SDC3-202ENST00000339394 MS4A6EQ96DS6 147 aa21.09■□□□□ 0.97
SDC3-202ENST00000339394 C7orf26Q96N11 449 aa21.09■□□□□ 0.97
SDC3-202ENST00000339394 SLC7A5P2Q9GIP4 190 aa21.09■□□□□ 0.97
SDC3-202ENST00000339394 TUBB1Q9H4B7 451 aa21.09■□□□□ 0.97
SDC3-202ENST00000339394 BRF2Q9HAW0 419 aa21.09■□□□□ 0.97
SDC3-202ENST00000339394 MSRB2Q9Y3D2 182 aa21.09■□□□□ 0.97
SDC3-202ENST00000339394 SLC22A7Q9Y694 548 aa21.09■□□□□ 0.97
SDC3-202ENST00000339394 AK5Q9Y6K8 562 aa21.09■□□□□ 0.97
SDC3-202ENST00000339394 URADA6NGE7 173 aa21.08■□□□□ 0.97
SDC3-202ENST00000339394 ALAS2P22557 587 aa21.08■□□□□ 0.97
SDC3-202ENST00000339394 GYS2P54840 703 aa21.08■□□□□ 0.97
SDC3-202ENST00000339394 TOR1AIP1Q5JTV8 583 aa21.08■□□□□ 0.97
SDC3-202ENST00000339394 TRIM46Q7Z4K8 759 aa21.08■□□□□ 0.97
SDC3-202ENST00000339394 HOMEZQ8IX15 550 aa21.08■□□□□ 0.97
SDC3-202ENST00000339394 KIRREL3Q8IZU9 778 aa21.08■□□□□ 0.97
SDC3-202ENST00000339394 DTWD1Q8N5C7 304 aa21.08■□□□□ 0.97
SDC3-202ENST00000339394 UTP15Q8TED0 518 aaKnown RBP21.08■□□□□ 0.97
SDC3-202ENST00000339394 ASCL3Q9NQ33 180 aa21.08■□□□□ 0.97
SDC3-202ENST00000339394 SRPK3Q9UPE1 567 aa21.08■□□□□ 0.97
SDC3-202ENST00000339394 PTGDR2Q9Y5Y4 395 aa21.08■□□□□ 0.97
SDC3-202ENST00000339394 SERTM1A2A2V5 107 aa21.07■□□□□ 0.96
SDC3-202ENST00000339394 CDRT15L2A8MXV6 281 aa21.07■□□□□ 0.96
SDC3-202ENST00000339394 TCP11X1B4DZS4 312 aa21.07■□□□□ 0.96
SDC3-202ENST00000339394 C4orf51C9J302 202 aa21.07■□□□□ 0.96
SDC3-202ENST00000339394 SAP18O00422 153 aaKnown RBP21.07■□□□□ 0.96
SDC3-202ENST00000339394 CPNE3O75131 537 aaKnown RBP21.07■□□□□ 0.96
SDC3-202ENST00000339394 DXOO77932 396 aaKnown RBP21.07■□□□□ 0.96
SDC3-202ENST00000339394 ZNF888P0CJ79 500 aaPredicted RBP21.07■□□□□ 0.96
SDC3-202ENST00000339394 SMIM10L1P0DMW3 83 aa21.07■□□□□ 0.96
SDC3-202ENST00000339394 SLC5A2P31639 672 aa21.07■□□□□ 0.96
SDC3-202ENST00000339394 PLA2G16P53816 162 aa21.07■□□□□ 0.96
SDC3-202ENST00000339394 RAB8AP61006 207 aa21.07■□□□□ 0.96
SDC3-202ENST00000339394 CUL3Q13618 768 aa21.07■□□□□ 0.96
SDC3-202ENST00000339394 FAM53BQ14153 422 aa21.07■□□□□ 0.96
SDC3-202ENST00000339394 NDUFA9Q16795 377 aa21.07■□□□□ 0.96
SDC3-202ENST00000339394 TMEM35AQ53FP2 167 aa21.07■□□□□ 0.96
SDC3-202ENST00000339394 ABHD13Q7L211 337 aa21.07■□□□□ 0.96
SDC3-202ENST00000339394 CRLF3Q8IUI8 442 aa21.07■□□□□ 0.96
SDC3-202ENST00000339394 GBP7Q8N8V2 638 aaPredicted RBP21.07■□□□□ 0.96
SDC3-202ENST00000339394 OR2L5Q8NG80 312 aa21.07■□□□□ 0.96
SDC3-202ENST00000339394 CLIP3Q96DZ5 547 aa21.07■□□□□ 0.96
SDC3-202ENST00000339394 SMIM10Q96HG1 83 aa21.07■□□□□ 0.96
SDC3-202ENST00000339394 SERPINI1Q99574 410 aa21.07■□□□□ 0.96
SDC3-202ENST00000339394 ACPTQ9BZG2 426 aa21.07■□□□□ 0.96
SDC3-202ENST00000339394 SPRY4Q9C004 299 aa21.07■□□□□ 0.96
SDC3-202ENST00000339394 TXLNGQ9NUQ3 528 aa21.07■□□□□ 0.96
SDC3-202ENST00000339394 MARCOQ9UEW3 520 aaPredicted RBP21.07■□□□□ 0.96
SDC3-202ENST00000339394 SLC12A4Q9UP95 1085 aa21.07■□□□□ 0.96
SDC3-202ENST00000339394 PCDHGA7Q9Y5G6 932 aa21.07■□□□□ 0.96
SDC3-202ENST00000339394 ERI3O43414 337 aaKnown RBP21.06■□□□□ 0.96
SDC3-202ENST00000339394 BRINP1O60477 761 aa21.06■□□□□ 0.96
SDC3-202ENST00000339394 STK17BO94768 372 aa21.06■□□□□ 0.96
SDC3-202ENST00000339394 HBQ1P09105 142 aa21.06■□□□□ 0.96
SDC3-202ENST00000339394 KITP10721 976 aa21.06■□□□□ 0.96
SDC3-202ENST00000339394 HSD3B1P14060 373 aa21.06■□□□□ 0.96
SDC3-202ENST00000339394 ALOX12P18054 663 aa21.06■□□□□ 0.96
SDC3-202ENST00000339394 HSD3B2P26439 372 aa21.06■□□□□ 0.96
SDC3-202ENST00000339394 HMGCS1Q01581 520 aa21.06■□□□□ 0.96
SDC3-202ENST00000339394 CSTF3Q12996 717 aaKnown RBP21.06■□□□□ 0.96
SDC3-202ENST00000339394 RNF165Q6ZSG1 346 aa21.06■□□□□ 0.96
SDC3-202ENST00000339394 FAM47EQ6ZV65 393 aa21.06■□□□□ 0.96
SDC3-202ENST00000339394 PRSS41Q7RTY9 318 aa21.06■□□□□ 0.96
SDC3-202ENST00000339394 AFAP1L2Q8N4X5 818 aa21.06■□□□□ 0.96
SDC3-202ENST00000339394 GAL3ST3Q96A11 431 aa21.06■□□□□ 0.96
SDC3-202ENST00000339394 NXPE2Q96DL1 559 aa21.06■□□□□ 0.96
SDC3-202ENST00000339394 CCDC134Q9H6E4 229 aa21.06■□□□□ 0.96
SDC3-202ENST00000339394 VPS29Q9UBQ0 182 aa21.06■□□□□ 0.96
SDC3-202ENST00000339394 NDOR1Q9UHB4 597 aa21.06■□□□□ 0.96
SDC3-202ENST00000339394 PIP5K1BO14986 540 aa21.06■□□□□ 0.96
SDC3-202ENST00000339394 FOXS1O43638 330 aa21.06■□□□□ 0.96
SDC3-202ENST00000339394 SKAP2O75563 359 aaPredicted RBP21.06■□□□□ 0.96
SDC3-202ENST00000339394 B3GALT4O96024 378 aa21.06■□□□□ 0.96
SDC3-202ENST00000339394 JUNP05412 331 aaKnown RBP21.06■□□□□ 0.96
SDC3-202ENST00000339394 LINC00032P0C843 101 aa21.06■□□□□ 0.96
SDC3-202ENST00000339394 IL1RNP18510 177 aa21.06■□□□□ 0.96
SDC3-202ENST00000339394 RORAP35398 523 aa21.06■□□□□ 0.96
SDC3-202ENST00000339394 HERC3Q15034 1050 aa21.06■□□□□ 0.96
SDC3-202ENST00000339394 DEFB134Q4QY38 66 aa21.06■□□□□ 0.96
SDC3-202ENST00000339394 C1orf189Q5VU69 101 aa21.06■□□□□ 0.96
SDC3-202ENST00000339394 TRIM40Q6P9F5 258 aa21.06■□□□□ 0.96
SDC3-202ENST00000339394 ABHD17CQ6PCB6 329 aa21.06■□□□□ 0.96
SDC3-202ENST00000339394 UBE3DQ7Z6J8 389 aa21.06■□□□□ 0.96
SDC3-202ENST00000339394 DDIASQ8IXT1 998 aa21.06■□□□□ 0.96
SDC3-202ENST00000339394 PIWIL2Q8TC59 973 aaKnown RBP21.06■□□□□ 0.96
SDC3-202ENST00000339394 C17orf62Q9BQA9 187 aa21.06■□□□□ 0.96
SDC3-202ENST00000339394 CENPKQ9BS16 269 aa21.06■□□□□ 0.96
SDC3-202ENST00000339394 SPTBP11277 2137 aa21.05■□□□□ 0.96
SDC3-202ENST00000339394 MDC1Q14676 2089 aaKnown RBP21.05■□□□□ 0.96
SDC3-202ENST00000339394 A0A0A6YYC8 382 aaPredicted RBP21.05■□□□□ 0.96
SDC3-202ENST00000339394 A0A0G2JN53 185 aa21.05■□□□□ 0.96
SDC3-202ENST00000339394 A0A1B0GX78 115 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms