RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 CHST10O43529 356 aa18.38■□□□□ 0.53
LIME1-201ENST00000309546 DNAJB6O75190 326 aa18.38■□□□□ 0.53
LIME1-201ENST00000309546 WDR47O94967 919 aa18.38■□□□□ 0.53
LIME1-201ENST00000309546 FHP07954 510 aa18.38■□□□□ 0.53
LIME1-201ENST00000309546 IL10P22301 178 aa18.38■□□□□ 0.53
LIME1-201ENST00000309546 AHRP35869 848 aa18.38■□□□□ 0.53
LIME1-201ENST00000309546 RAB8AP61006 207 aa18.38■□□□□ 0.53
LIME1-201ENST00000309546 CDKL1Q00532 357 aa18.38■□□□□ 0.53
LIME1-201ENST00000309546 INAQ16352 499 aa18.38■□□□□ 0.53
LIME1-201ENST00000309546 EXT1Q16394 746 aa18.38■□□□□ 0.53
LIME1-201ENST00000309546 C18orf21Q32NC0 220 aaPredicted RBP18.38■□□□□ 0.53
LIME1-201ENST00000309546 NXPE4Q6UWF7 544 aa18.38■□□□□ 0.53
LIME1-201ENST00000309546 CTAGE6Q86UF2 777 aa18.38■□□□□ 0.53
LIME1-201ENST00000309546 BEST3Q8N1M1 668 aa18.38■□□□□ 0.53
LIME1-201ENST00000309546 ANKRD53Q8N9V6 530 aa18.38■□□□□ 0.53
LIME1-201ENST00000309546 UTP15Q8TED0 518 aaKnown RBP18.38■□□□□ 0.53
LIME1-201ENST00000309546 ANKRD7Q92527 254 aa18.38■□□□□ 0.53
LIME1-201ENST00000309546 TBC1D20Q96BZ9 403 aa18.38■□□□□ 0.53
LIME1-201ENST00000309546 LPAR4Q99677 370 aa18.38■□□□□ 0.53
LIME1-201ENST00000309546 CAB39LQ9H9S4 337 aa18.38■□□□□ 0.53
LIME1-201ENST00000309546 MAGEB17A8MXT2 336 aa18.37■□□□□ 0.53
LIME1-201ENST00000309546 PRAMEF2O60811 474 aa18.37■□□□□ 0.53
LIME1-201ENST00000309546 B4GALT2O60909 372 aa18.37■□□□□ 0.53
LIME1-201ENST00000309546 CLDN1O95832 211 aa18.37■□□□□ 0.53
LIME1-201ENST00000309546 JAK1P23458 1154 aa18.37■□□□□ 0.53
LIME1-201ENST00000309546 GDF5P43026 501 aa18.37■□□□□ 0.53
LIME1-201ENST00000309546 ST13P50502 369 aaKnown RBP18.37■□□□□ 0.53
LIME1-201ENST00000309546 OR4D2P58180 307 aa18.37■□□□□ 0.53
LIME1-201ENST00000309546 TOR1AIP1Q5JTV8 583 aa18.37■□□□□ 0.53
LIME1-201ENST00000309546 NIPAL1Q6NVV3 410 aa18.37■□□□□ 0.53
LIME1-201ENST00000309546 MAMDC2Q7Z304 686 aaPredicted RBP18.37■□□□□ 0.53
LIME1-201ENST00000309546 SPATA6LQ8N4H0 392 aa18.37■□□□□ 0.53
LIME1-201ENST00000309546 PLPP5Q8NEB5 264 aa18.37■□□□□ 0.53
LIME1-201ENST00000309546 TRPV3Q8NET8 790 aa18.37■□□□□ 0.53
LIME1-201ENST00000309546 SPATA4Q8NEY3 305 aa18.37■□□□□ 0.53
LIME1-201ENST00000309546 CDKL2Q92772 493 aa18.37■□□□□ 0.53
LIME1-201ENST00000309546 ZNF354BQ96LW1 612 aa18.37■□□□□ 0.53
LIME1-201ENST00000309546 ERP44Q9BS26 406 aa18.37■□□□□ 0.53
LIME1-201ENST00000309546 POPDC3Q9HBV1 291 aa18.37■□□□□ 0.53
LIME1-201ENST00000309546 WHRNQ9P202 907 aa18.37■□□□□ 0.53
LIME1-201ENST00000309546 ABI3Q9P2A4 366 aa18.37■□□□□ 0.53
LIME1-201ENST00000309546 MTO1Q9Y2Z2 717 aaKnown RBP18.37■□□□□ 0.53
LIME1-201ENST00000309546 CROCCQ5TZA2 2017 aa18.37■□□□□ 0.53
LIME1-201ENST00000309546 WIPF3A6NGB9 483 aa18.36■□□□□ 0.53
LIME1-201ENST00000309546 URADA6NGE7 173 aa18.36■□□□□ 0.53
LIME1-201ENST00000309546 CXorf49A8MYA2 514 aaPredicted RBP18.36■□□□□ 0.53
LIME1-201ENST00000309546 PHGDHO43175 533 aaKnown RBP18.36■□□□□ 0.53
LIME1-201ENST00000309546 LRRTM2O43300 516 aa18.36■□□□□ 0.53
LIME1-201ENST00000309546 RASAL1O95294 804 aa18.36■□□□□ 0.53
LIME1-201ENST00000309546 COL8A1P27658 744 aa18.36■□□□□ 0.53
LIME1-201ENST00000309546 HNMTP50135 292 aa18.36■□□□□ 0.53
LIME1-201ENST00000309546 KCNK10P57789 538 aa18.36■□□□□ 0.53
LIME1-201ENST00000309546 POU4F1Q01851 419 aa18.36■□□□□ 0.53
LIME1-201ENST00000309546 SRSF11Q05519 484 aaKnown RBP18.36■□□□□ 0.53
LIME1-201ENST00000309546 USP10Q14694 798 aaKnown RBP18.36■□□□□ 0.53
LIME1-201ENST00000309546 ACER2Q5QJU3 275 aa18.36■□□□□ 0.53
LIME1-201ENST00000309546 MAATS1Q7Z4T9 603 aa18.36■□□□□ 0.53
LIME1-201ENST00000309546 CRLF3Q8IUI8 442 aa18.36■□□□□ 0.53
LIME1-201ENST00000309546 M1APQ8TC57 530 aa18.36■□□□□ 0.53
LIME1-201ENST00000309546 NR4A3Q92570 626 aa18.36■□□□□ 0.53
LIME1-201ENST00000309546 MCMBPQ9BTE3 642 aa18.36■□□□□ 0.53
LIME1-201ENST00000309546 SLC6A16Q9GZN6 736 aa18.36■□□□□ 0.53
LIME1-201ENST00000309546 RHBGQ9H310 441 aa18.36■□□□□ 0.53
LIME1-201ENST00000309546 KLHL31Q9H511 634 aa18.36■□□□□ 0.53
LIME1-201ENST00000309546 ANKRD10Q9NXR5 420 aa18.36■□□□□ 0.53
LIME1-201ENST00000309546 WWOXQ9NZC7 414 aa18.36■□□□□ 0.53
LIME1-201ENST00000309546 POLEQ07864 2286 aa18.35■□□□□ 0.53
LIME1-201ENST00000309546 DIDO1Q9BTC0 2240 aaKnown RBP18.35■□□□□ 0.53
LIME1-201ENST00000309546 PSMD12O00232 456 aaPredicted RBP18.35■□□□□ 0.53
LIME1-201ENST00000309546 EIF3HO15372 352 aaKnown RBP eCLIP18.35■□□□□ 0.53
LIME1-201ENST00000309546 MYBL2P10244 700 aa18.35■□□□□ 0.53
LIME1-201ENST00000309546 PER3P56645 1201 aa18.35■□□□□ 0.53
LIME1-201ENST00000309546 PMP22Q01453 160 aa18.35■□□□□ 0.53
LIME1-201ENST00000309546 MEP1AQ16819 746 aa18.35■□□□□ 0.53
LIME1-201ENST00000309546 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP18.35■□□□□ 0.53
LIME1-201ENST00000309546 CYP4X1Q8N118 509 aa18.35■□□□□ 0.53
LIME1-201ENST00000309546 C17orf53Q8N3J3 647 aaPredicted RBP18.35■□□□□ 0.53
LIME1-201ENST00000309546 CCT6BQ92526 530 aa18.35■□□□□ 0.53
LIME1-201ENST00000309546 RHBDF1Q96CC6 855 aa18.35■□□□□ 0.53
LIME1-201ENST00000309546 TSPAN17Q96FV3 270 aa18.35■□□□□ 0.53
LIME1-201ENST00000309546 PTCHD1Q96NR3 888 aa18.35■□□□□ 0.53
LIME1-201ENST00000309546 DERL2Q9GZP9 239 aa18.35■□□□□ 0.53
LIME1-201ENST00000309546 MMP25Q9NPA2 562 aa18.35■□□□□ 0.53
LIME1-201ENST00000309546 GRHL1Q9NZI5 618 aa18.35■□□□□ 0.53
LIME1-201ENST00000309546 TCRBV9S1A1TA0A576 114 aa18.34■□□□□ 0.53
LIME1-201ENST00000309546 C4orf51C9J302 202 aa18.34■□□□□ 0.53
LIME1-201ENST00000309546 CCDC166P0CW27 439 aa18.34■□□□□ 0.53
LIME1-201ENST00000309546 GNAZP19086 355 aa18.34■□□□□ 0.53
LIME1-201ENST00000309546 CASQ1P31415 396 aa18.34■□□□□ 0.53
LIME1-201ENST00000309546 SLC6A12P48065 614 aa18.34■□□□□ 0.53
LIME1-201ENST00000309546 TDGF1P3P51864 188 aa18.34■□□□□ 0.53
LIME1-201ENST00000309546 SLC26A5P58743 744 aa18.34■□□□□ 0.53
LIME1-201ENST00000309546 TAS2R50P59544 299 aa18.34■□□□□ 0.53
LIME1-201ENST00000309546 BTG2P78543 158 aa18.34■□□□□ 0.53
LIME1-201ENST00000309546 HYAL2Q12891 473 aa18.34■□□□□ 0.53
LIME1-201ENST00000309546 ILF2Q12905 390 aaKnown RBP18.34■□□□□ 0.53
LIME1-201ENST00000309546 SLBPQ14493 270 aaKnown RBP eCLIP18.34■□□□□ 0.53
LIME1-201ENST00000309546 TGFBIQ15582 683 aa18.34■□□□□ 0.53
LIME1-201ENST00000309546 FBXO48Q5FWF7 155 aa18.34■□□□□ 0.53
LIME1-201ENST00000309546 ZNF766Q5HY98 468 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms