RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 JRKO75564 520 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 ALDH1A1P00352 501 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 MBP02144 154 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 INSRRP14616 1297 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 IL32P24001 234 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 KCNC3Q14003 757 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 PTGES3Q15185 160 aaKnown RBP6.21□□□□□ -1.42
VPS35-201ENST00000299138 XKR7Q5GH72 579 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 SPIN3Q5JUX0 258 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 PIWIL3Q7Z3Z3 882 aaKnown RBP6.21□□□□□ -1.42
VPS35-201ENST00000299138 GPSM1Q86YR5 675 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 ZNF283Q8N7M2 679 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 ACOT12Q8WYK0 555 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 UBE2E3Q969T4 207 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 CLIP3Q96DZ5 547 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 IMP4Q96G21 291 aaKnown RBP6.21□□□□□ -1.42
VPS35-201ENST00000299138 LRCH3Q96II8 777 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 ZNF512Q96ME7 567 aaPredicted RBP6.21□□□□□ -1.42
VPS35-201ENST00000299138 CLPBQ9H078 707 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 MAGEH1Q9H213 219 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 OSGEPL1Q9H4B0 414 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 MOB1AQ9H8S9 216 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 IGSF5Q9NSI5 407 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 ACSL5Q9ULC5 683 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 A0A087WZ62 844 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 PRKYO43930 277 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 UBXN7O94888 489 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 IFNA21P01568 189 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 PRR35P0CG20 571 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 PKLRP30613 574 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 RORAP35398 523 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 PLA2G16P53816 162 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 CD47Q08722 323 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 GPR33Q49SQ1 333 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 XKR4Q5GH76 650 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 GNASQ5JWF2 1037 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 GPR158Q5T848 1215 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 OVOS1Q6IE37 1185 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 OR7D4Q8NG98 312 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 OR4L1Q8NH43 312 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 SPATA22Q8NHS9 363 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 SNIP1Q8TAD8 396 aaKnown RBP6.21□□□□□ -1.42
VPS35-201ENST00000299138 NELL1Q92832 810 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 MCCC1Q96RQ3 725 aaPredicted RBP6.21□□□□□ -1.42
VPS35-201ENST00000299138 BARD1Q99728 777 aaKnown RBP6.21□□□□□ -1.42
VPS35-201ENST00000299138 PAPOLGQ9BWT3 736 aaKnown RBP6.21□□□□□ -1.42
VPS35-201ENST00000299138 ALG9Q9H6U8 611 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 UNKLQ9H9P5 680 aaKnown RBP6.21□□□□□ -1.42
VPS35-201ENST00000299138 TMEM184CQ9NVA4 438 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 COPZ2Q9P299 210 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 EBF1Q9UH73 591 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 GPR45Q9Y5Y3 372 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 LOC100130705A0A1B0GUX0 176 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 F8W036 122 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 GMDSO60547 372 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 TOXO94900 526 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 PRKCGP05129 697 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 CD1DP15813 335 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 TAS2R41P59536 307 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 BLOC1S1P78537 153 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 RING1Q06587 406 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 CRTC2Q53ET0 693 aaPredicted RBP6.21□□□□□ -1.42
VPS35-201ENST00000299138 SLC35F1Q5T1Q4 408 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 UBE2R2Q712K3 238 aaPredicted RBP6.21□□□□□ -1.42
VPS35-201ENST00000299138 PSD4Q8NDX1 1056 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 NXPE2Q96DL1 559 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 GIMAP5Q96F15 307 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 C8orf48Q96LL4 319 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 ULBP1Q9BZM6 244 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 PLAC1Q9HBJ0 212 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 SMURF1Q9HCE7 757 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 ATP13A1Q9HD20 1204 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 OR2S2Q9NQN1 319 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 SLC45A1Q9Y2W3 748 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 Q9Y3F1 56 aa6.21□□□□□ -1.42
VPS35-201ENST00000299138 FXYD1O00168 92 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 SLITRK5O94991 958 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 EBLN1P0CF75 366 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 PIPP12273 146 aaPredicted RBP6.2□□□□□ -1.42
VPS35-201ENST00000299138 CHMP24386 653 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 BUD31P41223 144 aaPredicted RBP6.2□□□□□ -1.42
VPS35-201ENST00000299138 CDH8P55286 799 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 SERINC3Q13530 473 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 TPRG1LQ5T0D9 272 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 CERCAMQ5T4B2 595 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 ZNF783Q6ZMS7 281 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 MON1AQ86VX9 555 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 IL17RCQ8NAC3 791 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 LGALS12Q96DT0 336 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 MUS81Q96NY9 551 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 KXD1Q9BQD3 176 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 FDXACB1Q9BRP7 624 aaPredicted RBP6.2□□□□□ -1.42
VPS35-201ENST00000299138 FUZQ9BT04 418 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 NUDT9Q9BW91 350 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 ZNF395Q9H8N7 513 aaPredicted RBP6.2□□□□□ -1.42
VPS35-201ENST00000299138 CD93Q9NPY3 652 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 KCNS2Q9ULS6 477 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 NPIPA5A0A0B4J1W7 369 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 OR6C74A6NCV1 312 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 CDK14O94921 469 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms