RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 SH3BGRLO75368 114 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 JRKO75564 520 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 DNAJB5O75953 348 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 SERPINA6P08185 405 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 GSTA1P08263 222 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 RPS17P08708 135 aaKnown RBP12.66□□□□□ -0.38
VPS28-201ENST00000292510 CD63P08962 238 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 PCNAP12004 261 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 ALOX12P18054 663 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 KRT4P19013 534 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 TAC1P20366 129 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 HNRNPH1P31943 449 aaKnown RBP12.66□□□□□ -0.38
VPS28-201ENST00000292510 KLC1Q07866 573 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 LAPTM5Q13571 262 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 SSPNQ14714 243 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 HERC3Q15034 1050 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 HIST2H2ACQ16777 129 aaPredicted RBP12.66□□□□□ -0.38
VPS28-201ENST00000292510 SOWAHCQ53LP3 525 aaPredicted RBP12.66□□□□□ -0.38
VPS28-201ENST00000292510 PAGE2BQ5JRK9 111 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 FAM219BQ5XKK7 198 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 HIST2H2AA3Q6FI13 130 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 GRHL2Q6ISB3 625 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 PPP1R32Q7Z5V6 425 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 MRGPREQ86SM8 312 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 LCA5Q86VQ0 697 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 ZC3H7AQ8IWR0 971 aaKnown RBP12.66□□□□□ -0.38
VPS28-201ENST00000292510 RIBC1Q8N443 379 aaPredicted RBP12.66□□□□□ -0.38
VPS28-201ENST00000292510 EXD3Q8N9H8 876 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 TTLQ8NG68 377 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 OR52B6Q8NGF0 335 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 OR5T3Q8NGG3 340 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 CDK15Q96Q40 435 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 ARHGAP9Q9BRR9 750 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 RBCK1Q9BYM8 510 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 TRIM55Q9BYV6 548 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 ACTR8Q9H981 624 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 ZBTB26Q9HCK0 441 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 PRM3Q9NNZ6 103 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 SEMA4BQ9NPR2 832 aaPredicted RBP12.66□□□□□ -0.38
VPS28-201ENST00000292510 DCDC2Q9UHG0 476 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 RNF11Q9Y3C5 154 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 BSNQ9UPA5 3926 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 A0A1B0GTL3 188 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 LRIT2A6NDA9 550 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 OR2W5A6NFC9 320 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 H0YIG0 161 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 PPP6CO00743 305 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 COPEO14579 308 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 PRPF4O43172 522 aaKnown RBP eCLIP12.65□□□□□ -0.38
VPS28-201ENST00000292510 CLEC3AO75596 197 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 TUBBP07437 444 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 SMIM10L1P0DMW3 83 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 CRHR1P34998 444 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 ARL1P40616 181 aaPredicted RBP12.65□□□□□ -0.38
VPS28-201ENST00000292510 CCR10P46092 362 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 PIK3CGP48736 1102 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 EFNA3P52797 238 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 CDH13P55290 713 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 POLE2P56282 527 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 SLC18A2Q05940 514 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 PCDH1Q08174 1060 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 DDX39BQ13838 428 aaKnown RBP12.65□□□□□ -0.38
VPS28-201ENST00000292510 MED27Q6P2C8 311 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 ABHD13Q7L211 337 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 TRABD2AQ86V40 505 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 RAB43Q86YS6 212 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 OR7G3Q8NG95 312 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 OR51Q1Q8NH59 317 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 ZNF483Q8TF39 744 aaPredicted RBP12.65□□□□□ -0.38
VPS28-201ENST00000292510 ZNF473Q8WTR7 871 aaKnown RBP12.65□□□□□ -0.38
VPS28-201ENST00000292510 APOBEC4Q8WW27 367 aaKnown RBP12.65□□□□□ -0.38
VPS28-201ENST00000292510 THAP4Q8WY91 577 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 ATP6V1E2Q96A05 226 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 MS4A6EQ96DS6 147 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 SMIM10Q96HG1 83 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 TMEM237Q96Q45 408 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 CRB3Q9BUF7 120 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 ROPN1BQ9BZX4 212 aaPredicted RBP12.65□□□□□ -0.38
VPS28-201ENST00000292510 SEMA4CQ9C0C4 833 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 PITHD1Q9GZP4 211 aaPredicted RBP12.65□□□□□ -0.38
VPS28-201ENST00000292510 RHBGQ9H310 441 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 ROPN1Q9HAT0 212 aaPredicted RBP12.65□□□□□ -0.38
VPS28-201ENST00000292510 MKKSQ9NPJ1 570 aaPredicted RBP12.65□□□□□ -0.38
VPS28-201ENST00000292510 LGALS13Q9UHV8 139 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 C3orf18Q9UK00 162 aa12.65□□□□□ -0.38
VPS28-201ENST00000292510 NXT1Q9UKK6 140 aaKnown RBP12.65□□□□□ -0.38
VPS28-201ENST00000292510 TLN1Q9Y490 2541 aaKnown RBP12.64□□□□□ -0.39
VPS28-201ENST00000292510 URADA6NGE7 173 aa12.64□□□□□ -0.39
VPS28-201ENST00000292510 ATXN7O15265 892 aaPredicted RBP12.64□□□□□ -0.39
VPS28-201ENST00000292510 ERI3O43414 337 aaKnown RBP12.64□□□□□ -0.39
VPS28-201ENST00000292510 BMP10O95393 424 aa12.64□□□□□ -0.39
VPS28-201ENST00000292510 PROCP04070 461 aa12.64□□□□□ -0.39
VPS28-201ENST00000292510 ATP5F1P24539 256 aaPredicted RBP12.64□□□□□ -0.39
VPS28-201ENST00000292510 GSTM2P28161 218 aa12.64□□□□□ -0.39
VPS28-201ENST00000292510 XCR1P46094 333 aa12.64□□□□□ -0.39
VPS28-201ENST00000292510 CCT5P48643 541 aa12.64□□□□□ -0.39
VPS28-201ENST00000292510 CCNG1P51959 295 aa12.64□□□□□ -0.39
VPS28-201ENST00000292510 PLA2G16P53816 162 aa12.64□□□□□ -0.39
VPS28-201ENST00000292510 STXBP1P61764 594 aaKnown RBP12.64□□□□□ -0.39
VPS28-201ENST00000292510 BTN3A2P78410 334 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms