RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 PPWD1Q96BP3 646 aaKnown RBP15.77■□□□□ 0.11
USP4-201ENST00000265560 FCRL1Q96LA6 429 aa15.77■□□□□ 0.11
USP4-201ENST00000265560 DPH2Q9BQC3 489 aaPredicted RBP15.77■□□□□ 0.11
USP4-201ENST00000265560 ZNF717Q9BY31 904 aaPredicted RBP15.77■□□□□ 0.11
USP4-201ENST00000265560 RPF2Q9H7B2 306 aaKnown RBP15.77■□□□□ 0.11
USP4-201ENST00000265560 LHX9Q9NQ69 397 aa15.77■□□□□ 0.11
USP4-201ENST00000265560 SNX11Q9Y5W9 270 aa15.77■□□□□ 0.11
USP4-201ENST00000265560 C10orf142B7Z368 130 aa15.76■□□□□ 0.11
USP4-201ENST00000265560 SH3BP5O60239 455 aa15.76■□□□□ 0.11
USP4-201ENST00000265560 SCN2BO60939 215 aa15.76■□□□□ 0.11
USP4-201ENST00000265560 PTPN6P29350 595 aa15.76■□□□□ 0.11
USP4-201ENST00000265560 CXCL12P48061 93 aa15.76■□□□□ 0.11
USP4-201ENST00000265560 GRAMD1BQ3KR37 738 aa15.76■□□□□ 0.11
USP4-201ENST00000265560 AAGABQ6PD74 315 aa15.76■□□□□ 0.11
USP4-201ENST00000265560 PARGQ86W56 976 aa15.76■□□□□ 0.11
USP4-201ENST00000265560 LMX1AQ8TE12 382 aa15.76■□□□□ 0.11
USP4-201ENST00000265560 UBE2E3Q969T4 207 aa15.76■□□□□ 0.11
USP4-201ENST00000265560 TESCQ96BS2 214 aa15.76■□□□□ 0.11
USP4-201ENST00000265560 GBP5Q96PP8 586 aa15.76■□□□□ 0.11
USP4-201ENST00000265560 CHRDQ9H2X0 955 aa15.76■□□□□ 0.11
USP4-201ENST00000265560 PELI2Q9HAT8 420 aa15.76■□□□□ 0.11
USP4-201ENST00000265560 DMTF1Q9Y222 760 aa15.76■□□□□ 0.11
USP4-201ENST00000265560 SNX13Q9Y5W8 968 aa15.76■□□□□ 0.11
USP4-201ENST00000265560 NINQ8N4C6 2090 aa15.76■□□□□ 0.11
USP4-201ENST00000265560 A0A0J9YVX5 310 aa15.76■□□□□ 0.11
USP4-201ENST00000265560 HSD17B1P14061 328 aa15.76■□□□□ 0.11
USP4-201ENST00000265560 HRH2P25021 359 aa15.76■□□□□ 0.11
USP4-201ENST00000265560 VHLP40337 213 aa15.76■□□□□ 0.11
USP4-201ENST00000265560 CYP51A1Q16850 503 aa15.76■□□□□ 0.11
USP4-201ENST00000265560 UBE3DQ7Z6J8 389 aa15.76■□□□□ 0.11
USP4-201ENST00000265560 KCT2Q8NC54 265 aa15.76■□□□□ 0.11
USP4-201ENST00000265560 OR5AK3PQ8NH89 298 aa15.76■□□□□ 0.11
USP4-201ENST00000265560 ITCHQ96J02 903 aa15.76■□□□□ 0.11
USP4-201ENST00000265560 TEX10Q9NXF1 929 aaPredicted RBP15.76■□□□□ 0.11
USP4-201ENST00000265560 HEBP2Q9Y5Z4 205 aa15.76■□□□□ 0.11
USP4-201ENST00000265560 DYTNA2CJ06 578 aa15.75■□□□□ 0.11
USP4-201ENST00000265560 NPIPB8E9PQR5 432 aa15.75■□□□□ 0.11
USP4-201ENST00000265560 CASC3O15234 703 aaKnown RBP15.75■□□□□ 0.11
USP4-201ENST00000265560 TMPRSS11DO60235 418 aa15.75■□□□□ 0.11
USP4-201ENST00000265560 CXCR2P25025 360 aa15.75■□□□□ 0.11
USP4-201ENST00000265560 RHDQ02161 417 aa15.75■□□□□ 0.11
USP4-201ENST00000265560 TAF11Q15544 211 aa15.75■□□□□ 0.11
USP4-201ENST00000265560 MPEG1Q2M385 716 aa15.75■□□□□ 0.11
USP4-201ENST00000265560 IZUMO2Q6UXV1 221 aa15.75■□□□□ 0.11
USP4-201ENST00000265560 TICAM1Q8IUC6 712 aa15.75■□□□□ 0.11
USP4-201ENST00000265560 PQLC1Q8N2U9 271 aa15.75■□□□□ 0.11
USP4-201ENST00000265560 TEFMQ96QE5 360 aaKnown RBP15.75■□□□□ 0.11
USP4-201ENST00000265560 ACSL6Q9UKU0 697 aa15.75■□□□□ 0.11
USP4-201ENST00000265560 PCOLCE2Q9UKZ9 415 aa15.75■□□□□ 0.11
USP4-201ENST00000265560 AP4S1Q9Y587 144 aa15.75■□□□□ 0.11
USP4-201ENST00000265560 CCDC88CQ9P219 2028 aa15.75■□□□□ 0.11
USP4-201ENST00000265560 MYF5P13349 255 aa15.75■□□□□ 0.11
USP4-201ENST00000265560 CD27P26842 260 aa15.75■□□□□ 0.11
USP4-201ENST00000265560 SHMT2P34897 504 aa15.75■□□□□ 0.11
USP4-201ENST00000265560 LSSP48449 732 aa15.75■□□□□ 0.11
USP4-201ENST00000265560 RUNDC3AQ59EK9 446 aa15.75■□□□□ 0.11
USP4-201ENST00000265560 GLYATQ6IB77 296 aa15.75■□□□□ 0.11
USP4-201ENST00000265560 OR8K5Q8NH50 307 aa15.75■□□□□ 0.11
USP4-201ENST00000265560 NELL2Q99435 816 aa15.75■□□□□ 0.11
USP4-201ENST00000265560 GSDMCQ9BYG8 508 aa15.75■□□□□ 0.11
USP4-201ENST00000265560 RMND5AQ9H871 391 aa15.75■□□□□ 0.11
USP4-201ENST00000265560 HRASLS2Q9NWW9 162 aa15.75■□□□□ 0.11
USP4-201ENST00000265560 ERI3O43414 337 aaKnown RBP15.74■□□□□ 0.11
USP4-201ENST00000265560 STAMBPO95630 424 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 EIF2S1P05198 315 aaKnown RBP15.74■□□□□ 0.11
USP4-201ENST00000265560 MAPK12P53778 367 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 PHEXP78562 749 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 FOXM1Q08050 763 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 DEFB133Q30KQ1 61 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 TJAP1Q5JTD0 557 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 GALNT4Q8N4A0 578 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 FAM86B1Q8N7N1 296 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 OR2T12Q8NG77 320 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 CREB3L4Q8TEY5 395 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 RSC1A1Q92681 617 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 KCNH6Q9H252 994 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 TM9SF3Q9HD45 589 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 OR6C2Q9NZP2 312 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 LRIT2A6NDA9 550 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 C6orf47O95873 294 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 ENGP17813 658 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 BSGP35613 385 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 GRK3P35626 688 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 GALNT18Q6P9A2 607 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 PUM2Q8TB72 1066 aaKnown RBP eCLIP15.74■□□□□ 0.11
USP4-201ENST00000265560 ZDHHC1Q8WTX9 485 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 RAB11FIP5Q9BXF6 653 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 RHBGQ9H310 441 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 VPS4AQ9UN37 437 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 TLR4O00206 839 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 AGRPO00253 132 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 CTSVO60911 334 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 NUDT7P0C024 238 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 UGT2B7P16662 529 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 CMPK1P30085 196 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 HBA1P69905 142 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 IRX1P78414 480 aaPredicted RBP15.74■□□□□ 0.11
USP4-201ENST00000265560 HHEXQ03014 270 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 SRSF11Q05519 484 aaKnown RBP15.74■□□□□ 0.11
USP4-201ENST00000265560 ZNF33BQ06732 778 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms