RNA–Protein interactions for RNA: YOL013C

HRD1, Transcript of Ubiquitin-protein ligase, yeast

Gene HRD1, Length 1,656 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
HRD1	YOL013C	PIK1	P39104	1066 aa		4.23	□□□□□ -1.73
HRD1	YOL013C	RAD4	P14736	754 aa		4.22	□□□□□ -1.73
HRD1	YOL013C	DBP5	P20449	482 aa	Known RBP	4.22	□□□□□ -1.73
HRD1	YOL013C	RPA135	P22138	1203 aa	Known RBP	4.22	□□□□□ -1.73
HRD1	YOL013C	FAA4	P47912	694 aa	Known RBP	4.22	□□□□□ -1.73
HRD1	YOL013C	RCL1	Q08096	367 aa	Predicted RBP	4.22	□□□□□ -1.73
HRD1	YOL013C	MLS1	P30952	554 aa		4.22	□□□□□ -1.73
HRD1	YOL013C	TSA1	P34760	196 aa	Known RBP	4.22	□□□□□ -1.73
HRD1	YOL013C	RER2	P35196	286 aa		4.22	□□□□□ -1.73
HRD1	YOL013C	MNR2	P35724	969 aa		4.22	□□□□□ -1.73
HRD1	YOL013C	ETP1	P38748	585 aa	Known RBP	4.22	□□□□□ -1.73
HRD1	YOL013C	MRPL22	P53881	309 aa		4.22	□□□□□ -1.73
HRD1	YOL013C	DNM1	P54861	757 aa		4.22	□□□□□ -1.73
HRD1	YOL013C	ECM16	Q04217	1267 aa	Known RBP	4.22	□□□□□ -1.73
HRD1	YOL013C	CDA2	Q06703	312 aa		4.22	□□□□□ -1.73
HRD1	YOL013C	SNF5	P18480	905 aa		4.21	□□□□□ -1.74
HRD1	YOL013C	SEC6	P32844	805 aa		4.21	□□□□□ -1.74
HRD1	YOL013C	YKL069W	P36088	180 aa		4.21	□□□□□ -1.74
HRD1	YOL013C	GRX7	P38068	203 aa		4.21	□□□□□ -1.74
HRD1	YOL013C	ENP1	P38333	483 aa	Known RBP	4.21	□□□□□ -1.74
HRD1	YOL013C	NAB3	P38996	802 aa	Known RBP RIP-Chip data	4.21	□□□□□ -1.74	not detected
HRD1	YOL013C	SEC26	P41810	973 aa	Known RBP	4.21	□□□□□ -1.74
HRD1	YOL013C	HNT2	P49775	206 aa		4.21	□□□□□ -1.74
HRD1	YOL013C	SNO2	P53823	222 aa		4.21	□□□□□ -1.74
HRD1	YOL013C	GDE1	Q02979	1223 aa		4.21	□□□□□ -1.74
HRD1	YOL013C	YDL177C	Q12257	170 aa		4.21	□□□□□ -1.74
HRD1	YOL013C	PHO8	P11491	566 aa		4.2	□□□□□ -1.74
HRD1	YOL013C	YHR020W	P38708	688 aa	Known RBP	4.2	□□□□□ -1.74
HRD1	YOL013C	MPH1	P40562	993 aa		4.2	□□□□□ -1.74
HRD1	YOL013C	TIM54	P47045	478 aa		4.2	□□□□□ -1.74
HRD1	YOL013C	YDL121C	Q07541	149 aa		4.2	□□□□□ -1.74
HRD1	YOL013C	ERR1	P0CX10	437 aa		4.19	□□□□□ -1.74
HRD1	YOL013C	ERR2	P0CX11	437 aa		4.19	□□□□□ -1.74
HRD1	YOL013C	YER152C	P10356	443 aa		4.19	□□□□□ -1.74
HRD1	YOL013C	CDC34	P14682	295 aa		4.19	□□□□□ -1.74
HRD1	YOL013C	SRM1	P21827	482 aa		4.19	□□□□□ -1.74
HRD1	YOL013C	CRP1	P38845	465 aa	Known RBP	4.19	□□□□□ -1.74
HRD1	YOL013C	FOL1	P53848	824 aa		4.19	□□□□□ -1.74
HRD1	YOL013C	TIF35	Q04067	274 aa	Known RBP	4.19	□□□□□ -1.74
HRD1	YOL013C	YOR352W	Q08816	343 aa		4.19	□□□□□ -1.74
HRD1	YOL013C	GAL11	P19659	1081 aa		4.19	□□□□□ -1.74
HRD1	YOL013C	MCM7	P38132	845 aa		4.19	□□□□□ -1.74
HRD1	YOL013C	YGL081W	P53156	320 aa		4.19	□□□□□ -1.74
HRD1	YOL013C	TDA5	Q06417	326 aa	Known RBP	4.19	□□□□□ -1.74
HRD1	YOL013C	GNT1	Q12096	491 aa		4.19	□□□□□ -1.74
HRD1	YOL013C	PRP6	P19735	899 aa	Predicted RBP	4.18	□□□□□ -1.74
HRD1	YOL013C	LYP1	P32487	611 aa		4.18	□□□□□ -1.74
HRD1	YOL013C	DUT1	P33317	147 aa		4.18	□□□□□ -1.74
HRD1	YOL013C	FUI1	P38196	639 aa		4.18	□□□□□ -1.74
HRD1	YOL013C	SPF1	P39986	1215 aa	Known RBP	4.18	□□□□□ -1.74
HRD1	YOL013C	TYW3	P53177	273 aa		4.18	□□□□□ -1.74
HRD1	YOL013C	THI4	P32318	326 aa		4.17	□□□□□ -1.74
HRD1	YOL013C	RFC5	P38251	354 aa		4.17	□□□□□ -1.74
HRD1	YOL013C	AIM3	P38266	947 aa	Known RBP	4.17	□□□□□ -1.74
HRD1	YOL013C	AIM21	P40563	679 aa		4.17	□□□□□ -1.74
HRD1	YOL013C	RIM8	P53179	542 aa		4.17	□□□□□ -1.74
HRD1	YOL013C	NAN1	Q02931	896 aa	Known RBP	4.17	□□□□□ -1.74
HRD1	YOL013C	RSM24	Q03976	319 aa		4.17	□□□□□ -1.74
HRD1	YOL013C	OPI10	Q08202	246 aa		4.17	□□□□□ -1.74
HRD1	YOL013C	SOD2	P00447	233 aa		4.16	□□□□□ -1.74
HRD1	YOL013C	TRP2	P00899	507 aa	Known RBP	4.16	□□□□□ -1.74
HRD1	YOL013C	RSP5	P39940	809 aa	Known RBP	4.16	□□□□□ -1.74
HRD1	YOL013C	YNR029C	P53729	429 aa	Known RBP	4.16	□□□□□ -1.74
HRD1	YOL013C	SVL3	Q03088	825 aa	Known RBP	4.16	□□□□□ -1.74
HRD1	YOL013C	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	4.16	□□□□□ -1.74	not detected
HRD1	YOL013C	FLC1	Q08967	793 aa		4.16	□□□□□ -1.74
HRD1	YOL013C	ADR1	P07248	1323 aa		4.16	□□□□□ -1.74
HRD1	YOL013C	KAR1	P11927	433 aa		4.16	□□□□□ -1.74
HRD1	YOL013C	BAS1	P22035	811 aa		4.16	□□□□□ -1.74
HRD1	YOL013C	THI80	P35202	319 aa		4.16	□□□□□ -1.74
HRD1	YOL013C	SNF7	P39929	240 aa	Known RBP	4.16	□□□□□ -1.74
HRD1	YOL013C	YFL054C	P43549	646 aa		4.16	□□□□□ -1.74
HRD1	YOL013C	PEX8	P53248	589 aa		4.16	□□□□□ -1.74
HRD1	YOL013C	EEB1	Q02891	456 aa		4.16	□□□□□ -1.74
HRD1	YOL013C	SPO20	Q04359	397 aa		4.16	□□□□□ -1.74
HRD1	YOL013C	UTP14	Q04500	899 aa	Known RBP	4.16	□□□□□ -1.74
HRD1	YOL013C	SGD1	Q06132	899 aa		4.16	□□□□□ -1.74
HRD1	YOL013C	ACM1	Q08981	209 aa		4.16	□□□□□ -1.74
HRD1	YOL013C	YLR125W	Q12138	136 aa		4.16	□□□□□ -1.74
HRD1	YOL013C	NOP14	Q99207	810 aa	Known RBP	4.16	□□□□□ -1.74
HRD1	YOL013C	CYC1	P00044	109 aa	Predicted RBP	4.15	□□□□□ -1.75
HRD1	YOL013C	RPS13	P05756	151 aa	Known RBP	4.15	□□□□□ -1.75
HRD1	YOL013C	RPL11A	P0C0W9	174 aa	Known RBP	4.15	□□□□□ -1.75
HRD1	YOL013C	INO1	P11986	533 aa		4.15	□□□□□ -1.75
HRD1	YOL013C	KIN2	P13186	1147 aa	Known RBP	4.15	□□□□□ -1.75
HRD1	YOL013C	STE5	P32917	917 aa		4.15	□□□□□ -1.75
HRD1	YOL013C	GEM1	P39722	662 aa		4.15	□□□□□ -1.75
HRD1	YOL013C	NOP2	P40991	618 aa	Known RBP	4.15	□□□□□ -1.75
HRD1	YOL013C	KRI1	P42846	591 aa	Known RBP	4.15	□□□□□ -1.75
HRD1	YOL013C	SPP382	Q06411	708 aa	Predicted RBP	4.15	□□□□□ -1.75
HRD1	YOL013C	ATG13	Q06628	738 aa		4.15	□□□□□ -1.75
HRD1	YOL013C	YPL277C	Q08989	487 aa		4.15	□□□□□ -1.75
HRD1	YOL013C	SVS1	Q12254	260 aa		4.15	□□□□□ -1.75
HRD1	YOL013C	RKM4	Q12504	494 aa		4.15	□□□□□ -1.75
HRD1	YOL013C	RPL11B	Q3E757	174 aa	Predicted RBP	4.15	□□□□□ -1.75
HRD1	YOL013C	THS1	P04801	734 aa	Known RBP	4.14	□□□□□ -1.75
HRD1	YOL013C	TRX2	P22803	104 aa	Known RBP	4.14	□□□□□ -1.75
HRD1	YOL013C	CDC11	P32458	415 aa		4.14	□□□□□ -1.75
HRD1	YOL013C	ABZ1	P37254	787 aa	Predicted RBP	4.14	□□□□□ -1.75
HRD1	YOL013C	LAM1	P38851	1228 aa		4.14	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 35.1 ms