RNA–Protein interactions for RNA: ENST00000638680.1

SCARB2-213, Transcript of scavenger receptor class B member 2, humanhuman

TSL 5

Gene SCARB2, Length 5,817 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB2-213ENST00000638680 BIN1O00499 593 aa21.48■■□□□ 1.03
SCARB2-213ENST00000638680 TAF7Q15545 349 aaPredicted RBP21.48■■□□□ 1.03
SCARB2-213ENST00000638680 USP5P45974 858 aa21.47■■□□□ 1.03
SCARB2-213ENST00000638680 MYD88Q99836 296 aa21.47■■□□□ 1.03
SCARB2-213ENST00000638680 IBSPP21815 317 aaPredicted RBP21.47■■□□□ 1.03
SCARB2-213ENST00000638680 SNW1Q13573 536 aaKnown RBP21.47■■□□□ 1.03
SCARB2-213ENST00000638680 LRSAM1Q6UWE0 723 aa21.47■■□□□ 1.03
SCARB2-213ENST00000638680 UBE2HP62256 183 aa21.46■■□□□ 1.03
SCARB2-213ENST00000638680 TTC22Q5TAA0 569 aa21.46■■□□□ 1.03
SCARB2-213ENST00000638680 CEP135Q66GS9 1140 aa21.46■■□□□ 1.03
SCARB2-213ENST00000638680 AKAP2Q9Y2D5 859 aa21.46■■□□□ 1.03
SCARB2-213ENST00000638680 CCDC113Q9H0I3 377 aa21.46■■□□□ 1.03
SCARB2-213ENST00000638680 INCENPQ9NQS7 918 aa21.46■■□□□ 1.03
SCARB2-213ENST00000638680 ABCF2Q9UG63 623 aa21.46■■□□□ 1.03
SCARB2-213ENST00000638680 DYDC1Q8WWB3 177 aa21.46■■□□□ 1.03
SCARB2-213ENST00000638680 PRIMPOLQ96LW4 560 aa21.46■■□□□ 1.03
SCARB2-213ENST00000638680 XRCC6P12956 609 aaKnown RBP eCLIP21.45■■□□□ 1.02
SCARB2-213ENST00000638680 ZNF76P36508 570 aa21.45■■□□□ 1.02
SCARB2-213ENST00000638680 LARP1Q6PKG0 1096 aaKnown RBP21.45■■□□□ 1.02
SCARB2-213ENST00000638680 CACNA2D4Q7Z3S7 1137 aa21.45■■□□□ 1.02
SCARB2-213ENST00000638680 ZNF165P49910 485 aa21.45■■□□□ 1.02
SCARB2-213ENST00000638680 MAP2K1Q02750 393 aaPredicted RBP21.45■■□□□ 1.02
SCARB2-213ENST00000638680 ZNF830Q96NB3 372 aaPredicted RBP21.45■■□□□ 1.02
SCARB2-213ENST00000638680 DNA2P51530 1060 aa21.45■■□□□ 1.02
SCARB2-213ENST00000638680 DHX29Q7Z478 1369 aaKnown RBP21.45■■□□□ 1.02
SCARB2-213ENST00000638680 SSR1P43307 286 aaKnown RBP21.45■■□□□ 1.02
SCARB2-213ENST00000638680 CCDC82Q8N4S0 544 aa21.45■■□□□ 1.02
SCARB2-213ENST00000638680 MINDY4BA8MYZ0 360 aa21.44■■□□□ 1.02
SCARB2-213ENST00000638680 HCLS1P14317 486 aaPredicted RBP21.44■■□□□ 1.02
SCARB2-213ENST00000638680 EZRP15311 586 aaKnown RBP21.44■■□□□ 1.02
SCARB2-213ENST00000638680 LUZP1Q86V48 1076 aa21.44■■□□□ 1.02
SCARB2-213ENST00000638680 IGHMBP2P38935 993 aaKnown RBP21.44■■□□□ 1.02
SCARB2-213ENST00000638680 TSHZ3Q63HK5 1081 aa21.44■■□□□ 1.02
SCARB2-213ENST00000638680 GOLGA8BA8MQT2 603 aa21.44■■□□□ 1.02
SCARB2-213ENST00000638680 CCDC178Q5BJE1 867 aa21.44■■□□□ 1.02
SCARB2-213ENST00000638680 SLC26A8Q96RN1 970 aa21.44■■□□□ 1.02
SCARB2-213ENST00000638680 PCF11O94913 1555 aaKnown RBP21.44■■□□□ 1.02
SCARB2-213ENST00000638680 PTPN23Q9H3S7 1636 aa21.44■■□□□ 1.02
SCARB2-213ENST00000638680 CLCN1P35523 988 aa21.44■■□□□ 1.02
SCARB2-213ENST00000638680 YEATS4O95619 227 aa21.44■■□□□ 1.02
SCARB2-213ENST00000638680 GIMAP6Q6P9H5 292 aa21.44■■□□□ 1.02
SCARB2-213ENST00000638680 EMILIN1Q9Y6C2 1016 aa21.44■■□□□ 1.02
SCARB2-213ENST00000638680 CCDC61Q9Y6R9 512 aa21.44■■□□□ 1.02
SCARB2-213ENST00000638680 CCDC141Q6ZP82 1450 aa21.44■■□□□ 1.02
SCARB2-213ENST00000638680 PTPRCP08575 1304 aa21.43■■□□□ 1.02
SCARB2-213ENST00000638680 NAPBQ9H115 298 aa21.43■■□□□ 1.02
SCARB2-213ENST00000638680 EPRSP07814 1512 aaKnown RBP21.43■■□□□ 1.02
SCARB2-213ENST00000638680 DNAAF4Q8WXU2 420 aa21.43■■□□□ 1.02
SCARB2-213ENST00000638680 EVI5LQ96CN4 794 aa21.43■■□□□ 1.02
SCARB2-213ENST00000638680 SLC12A7Q9Y666 1083 aa21.43■■□□□ 1.02
SCARB2-213ENST00000638680 PAF1Q8N7H5 531 aa21.43■■□□□ 1.02
SCARB2-213ENST00000638680 RBM5P52756 815 aaKnown RBP eCLIP21.42■■□□□ 1.02
SCARB2-213ENST00000638680 NME9Q86XW9 330 aa21.42■■□□□ 1.02
SCARB2-213ENST00000638680 PHAXQ9H814 394 aaKnown RBP21.42■■□□□ 1.02
SCARB2-213ENST00000638680 CCDC196A0A1B0GTZ2 297 aa21.42■■□□□ 1.02
SCARB2-213ENST00000638680 SSRP1Q08945 709 aaKnown RBP21.42■■□□□ 1.02
SCARB2-213ENST00000638680 TSG101Q99816 390 aa21.42■■□□□ 1.02
SCARB2-213ENST00000638680 PAXBP1Q9Y5B6 917 aa21.42■■□□□ 1.02
SCARB2-213ENST00000638680 POTEB2H3BUK9 544 aa21.42■■□□□ 1.02
SCARB2-213ENST00000638680 ZNF213O14771 459 aa21.42■■□□□ 1.02
SCARB2-213ENST00000638680 RNF187Q5TA31 235 aaPredicted RBP21.42■■□□□ 1.02
SCARB2-213ENST00000638680 PANK2Q9BZ23 570 aa21.42■■□□□ 1.02
SCARB2-213ENST00000638680 WAPLQ7Z5K2 1190 aa21.42■■□□□ 1.02
SCARB2-213ENST00000638680 TMX3Q96JJ7 454 aa21.41■■□□□ 1.02
SCARB2-213ENST00000638680 USO1O60763 962 aaKnown RBP21.41■■□□□ 1.02
SCARB2-213ENST00000638680 NUCB1Q02818 461 aa21.41■■□□□ 1.02
SCARB2-213ENST00000638680 IFFO1Q0D2I5 559 aa21.41■■□□□ 1.02
SCARB2-213ENST00000638680 BCCIPQ9P287 314 aaKnown RBP eCLIP21.41■■□□□ 1.02
SCARB2-213ENST00000638680 ISM2Q6H9L7 571 aa21.41■■□□□ 1.02
SCARB2-213ENST00000638680 PAFAH1B1P43034 410 aa21.41■■□□□ 1.02
SCARB2-213ENST00000638680 BMS1Q14692 1282 aaKnown RBP21.41■■□□□ 1.02
SCARB2-213ENST00000638680 THEMISQ8N1K5 641 aaPredicted RBP21.41■■□□□ 1.02
SCARB2-213ENST00000638680 SMARCC1Q92922 1105 aaPredicted RBP21.41■■□□□ 1.02
SCARB2-213ENST00000638680 GOPCQ9HD26 462 aa21.4■■□□□ 1.02
SCARB2-213ENST00000638680 GOLGA8AA7E2F4 631 aa21.4■■□□□ 1.02
SCARB2-213ENST00000638680 USHBP1Q8N6Y0 703 aa21.4■■□□□ 1.02
SCARB2-213ENST00000638680 PPP1R12BO60237 982 aaPredicted RBP21.4■■□□□ 1.02
SCARB2-213ENST00000638680 SEC63Q9UGP8 760 aaKnown RBP21.4■■□□□ 1.02
SCARB2-213ENST00000638680 LMAN1P49257 510 aa21.39■■□□□ 1.01
SCARB2-213ENST00000638680 FLIIQ13045 1269 aa21.39■■□□□ 1.01
SCARB2-213ENST00000638680 ZMYND15Q9H091 742 aa21.39■■□□□ 1.01
SCARB2-213ENST00000638680 ZSCAN29Q8IWY8 852 aaPredicted RBP21.39■■□□□ 1.01
SCARB2-213ENST00000638680 ECHDC1Q9NTX5 307 aa21.39■■□□□ 1.01
SCARB2-213ENST00000638680 CAMSAP2Q08AD1 1489 aa21.39■■□□□ 1.01
SCARB2-213ENST00000638680 ZSCAN22P10073 491 aaPredicted RBP21.39■■□□□ 1.01
SCARB2-213ENST00000638680 MATR3P43243 847 aaKnown RBP eCLIP21.39■■□□□ 1.01
SCARB2-213ENST00000638680 NOLC1Q14978 699 aaKnown RBP eCLIP21.39■■□□□ 1.01
SCARB2-213ENST00000638680 CCDC150Q8NCX0 1101 aa21.39■■□□□ 1.01
SCARB2-213ENST00000638680 CTR9Q6PD62 1173 aa21.38■■□□□ 1.01
SCARB2-213ENST00000638680 POLR3DP05423 398 aaPredicted RBP21.38■■□□□ 1.01
SCARB2-213ENST00000638680 MICALCLQ6ZW33 695 aa21.38■■□□□ 1.01
SCARB2-213ENST00000638680 MAP3K1Q13233 1512 aa21.38■■□□□ 1.01
SCARB2-213ENST00000638680 TDRD12Q587J7 1177 aaKnown RBP21.38■■□□□ 1.01
SCARB2-213ENST00000638680 GOLGA6L9A6NEM1 432 aa21.37■■□□□ 1.01
SCARB2-213ENST00000638680 HDAC1Q13547 482 aaPredicted RBP21.37■■□□□ 1.01
SCARB2-213ENST00000638680 CNPY2Q9Y2B0 182 aa21.37■■□□□ 1.01
SCARB2-213ENST00000638680 PPFIA3O75145 1194 aa21.37■■□□□ 1.01
SCARB2-213ENST00000638680 ZSWIM4Q9H7M6 989 aa21.37■■□□□ 1.01
SCARB2-213ENST00000638680 ABCC5O15440 1437 aa21.37■■□□□ 1.01
SCARB2-213ENST00000638680 GOLGA6L10A0A0M3HER8 536 aa21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms