RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 INTS3Q68E01 1043 aaKnown RBP23.09■■□□□ 1.29
CLN3-263ENST00000637871 FAM196AQ6ZSG2 479 aa23.09■■□□□ 1.29
CLN3-263ENST00000637871 TSPYL4Q9UJ04 414 aa23.09■■□□□ 1.29
CLN3-263ENST00000637871 TRIM37O94972 964 aa23.08■■□□□ 1.28
CLN3-263ENST00000637871 PRIM1P49642 420 aaKnown RBP23.08■■□□□ 1.28
CLN3-263ENST00000637871 IL17REQ8NFR9 667 aa23.08■■□□□ 1.28
CLN3-263ENST00000637871 DCAF5Q96JK2 942 aa23.08■■□□□ 1.28
CLN3-263ENST00000637871 BCL9O00512 1426 aa23.07■■□□□ 1.28
CLN3-263ENST00000637871 RNMTO43148 476 aaKnown RBP23.07■■□□□ 1.28
CLN3-263ENST00000637871 NPM2Q86SE8 214 aaKnown RBP23.07■■□□□ 1.28
CLN3-263ENST00000637871 TNS1Q9HBL0 1735 aaKnown RBP23.06■■□□□ 1.28
CLN3-263ENST00000637871 HSP90AB1P08238 724 aaKnown RBP23.06■■□□□ 1.28
CLN3-263ENST00000637871 BTAF1O14981 1849 aa23.05■■□□□ 1.28
CLN3-263ENST00000637871 TAF7Q15545 349 aaPredicted RBP23.04■■□□□ 1.28
CLN3-263ENST00000637871 MRC1P22897 1456 aa23.03■■□□□ 1.28
CLN3-263ENST00000637871 SIPA1L3O60292 1781 aaPredicted RBP23.03■■□□□ 1.28
CLN3-263ENST00000637871 NUCB1Q02818 461 aa23.03■■□□□ 1.28
CLN3-263ENST00000637871 UPF2Q9HAU5 1272 aaKnown RBP23.02■■□□□ 1.28
CLN3-263ENST00000637871 CEMIPQ8WUJ3 1361 aa23.02■■□□□ 1.28
CLN3-263ENST00000637871 CABP4P57796 275 aa23■■□□□ 1.27
CLN3-263ENST00000637871 CCDC30Q5VVM6 783 aa23■■□□□ 1.27
CLN3-263ENST00000637871 NFATC2IPQ8NCF5 419 aa23■■□□□ 1.27
CLN3-263ENST00000637871 PIGBQ92521 554 aa23■■□□□ 1.27
CLN3-263ENST00000637871 STK31Q9BXU1 1019 aa23■■□□□ 1.27
CLN3-263ENST00000637871 TMOD3Q9NYL9 352 aa23■■□□□ 1.27
CLN3-263ENST00000637871 ERVV-2B6SEH9 535 aa22.99■■□□□ 1.27
CLN3-263ENST00000637871 RPAP2Q8IXW5 612 aaPredicted RBP22.99■■□□□ 1.27
CLN3-263ENST00000637871 SLC52A2Q9HAB3 445 aa22.99■■□□□ 1.27
CLN3-263ENST00000637871 EIF5BO60841 1220 aaKnown RBP22.98■■□□□ 1.27
CLN3-263ENST00000637871 BCL11BQ9C0K0 894 aaPredicted RBP22.98■■□□□ 1.27
CLN3-263ENST00000637871 SLC4A2P04920 1241 aa22.97■■□□□ 1.27
CLN3-263ENST00000637871 HOXB7P09629 217 aa22.97■■□□□ 1.27
CLN3-263ENST00000637871 CCT4P50991 539 aaKnown RBP22.97■■□□□ 1.27
CLN3-263ENST00000637871 TEFQ10587 303 aa22.97■■□□□ 1.27
CLN3-263ENST00000637871 DAXXQ9UER7 740 aaPredicted RBP22.97■■□□□ 1.27
CLN3-263ENST00000637871 CHD1LQ86WJ1 897 aa22.97■■□□□ 1.27
CLN3-263ENST00000637871 PAPPAQ13219 1627 aa22.96■■□□□ 1.27
CLN3-263ENST00000637871 MIS18AQ9NYP9 233 aa22.96■■□□□ 1.27
CLN3-263ENST00000637871 SLC39A6Q13433 755 aa22.95■■□□□ 1.26
CLN3-263ENST00000637871 UPF1Q92900 1129 aaKnown RBP eCLIP22.95■■□□□ 1.26
CLN3-263ENST00000637871 ASAP1Q9ULH1 1129 aa22.95■■□□□ 1.26
CLN3-263ENST00000637871 APBA3O96018 575 aa22.94■■□□□ 1.26
CLN3-263ENST00000637871 KRT24Q2M2I5 525 aa22.93■■□□□ 1.26
CLN3-263ENST00000637871 CACNA1FO60840 1977 aa22.93■■□□□ 1.26
CLN3-263ENST00000637871 KCNQ3O43525 872 aa22.92■■□□□ 1.26
CLN3-263ENST00000637871 DEFB132Q7Z7B7 95 aa22.92■■□□□ 1.26
CLN3-263ENST00000637871 ANKRD44Q8N8A2 993 aa22.92■■□□□ 1.26
CLN3-263ENST00000637871 ATG3Q9NT62 314 aa22.92■■□□□ 1.26
CLN3-263ENST00000637871 KDM3BQ7LBC6 1761 aa22.91■■□□□ 1.26
CLN3-263ENST00000637871 PALLDQ8WX93 1383 aa22.9■■□□□ 1.26
CLN3-263ENST00000637871 BTBD11A6QL63 1104 aa22.9■■□□□ 1.26
CLN3-263ENST00000637871 DCTPP1Q9H773 170 aa22.9■■□□□ 1.26
CLN3-263ENST00000637871 HMMRO75330 724 aa22.9■■□□□ 1.26
CLN3-263ENST00000637871 KCNQ4P56696 695 aa22.9■■□□□ 1.26
CLN3-263ENST00000637871 LY75O60449 1722 aa22.89■■□□□ 1.25
CLN3-263ENST00000637871 UBR2Q8IWV8 1755 aa22.89■■□□□ 1.25
CLN3-263ENST00000637871 KCPQ6ZWJ8 1503 aa22.89■■□□□ 1.25
CLN3-263ENST00000637871 EN1Q05925 392 aaPredicted RBP22.89■■□□□ 1.25
CLN3-263ENST00000637871 SF3B2Q13435 895 aaKnown RBP22.89■■□□□ 1.25
CLN3-263ENST00000637871 BMP2KLQ5H9B9 411 aa22.88■■□□□ 1.25
CLN3-263ENST00000637871 ANKRD45Q5TZF3 282 aa22.88■■□□□ 1.25
CLN3-263ENST00000637871 PTCD1O75127 700 aaKnown RBP22.87■■□□□ 1.25
CLN3-263ENST00000637871 BECN1Q14457 450 aa22.87■■□□□ 1.25
CLN3-263ENST00000637871 SIRT2Q8IXJ6 389 aa22.87■■□□□ 1.25
CLN3-263ENST00000637871 PXDNLA1KZ92 1463 aa22.86■■□□□ 1.25
CLN3-263ENST00000637871 GNAI3P08754 354 aa22.86■■□□□ 1.25
CLN3-263ENST00000637871 FLIIQ13045 1269 aa22.86■■□□□ 1.25
CLN3-263ENST00000637871 EZH2Q15910 746 aaKnown RBP22.86■■□□□ 1.25
CLN3-263ENST00000637871 ZNF790Q6PG37 636 aa22.86■■□□□ 1.25
CLN3-263ENST00000637871 RBM42Q9BTD8 480 aaKnown RBP22.86■■□□□ 1.25
CLN3-263ENST00000637871 RGPD3A6NKT7 1758 aaPredicted RBP22.85■■□□□ 1.25
CLN3-263ENST00000637871 RGPD4Q7Z3J3 1758 aa22.85■■□□□ 1.25
CLN3-263ENST00000637871 TBC1D32Q96NH3 1257 aa22.85■■□□□ 1.25
CLN3-263ENST00000637871 LNPKQ9C0E8 428 aa22.85■■□□□ 1.25
CLN3-263ENST00000637871 TTC5Q8N0Z6 440 aa22.84■■□□□ 1.25
CLN3-263ENST00000637871 SLC4A9Q96Q91 983 aa22.84■■□□□ 1.25
CLN3-263ENST00000637871 BAG6P46379 1132 aa22.83■■□□□ 1.25
CLN3-263ENST00000637871 EIF4A1P60842 406 aaKnown RBP22.83■■□□□ 1.25
CLN3-263ENST00000637871 CEP85Q6P2H3 762 aa22.83■■□□□ 1.25
CLN3-263ENST00000637871 PROM2Q8N271 834 aa22.83■■□□□ 1.25
CLN3-263ENST00000637871 ZNF496Q96IT1 587 aaPredicted RBP22.83■■□□□ 1.25
CLN3-263ENST00000637871 C1orf115Q9H7X2 142 aa22.83■■□□□ 1.25
CLN3-263ENST00000637871 TJP1Q07157 1748 aa22.83■■□□□ 1.24
CLN3-263ENST00000637871 ATP10DQ9P241 1426 aa22.82■■□□□ 1.24
CLN3-263ENST00000637871 C5P01031 1676 aa22.82■■□□□ 1.24
CLN3-263ENST00000637871 RREB1Q92766 1687 aa22.82■■□□□ 1.24
CLN3-263ENST00000637871 HDGFL1Q5TGJ6 251 aa22.82■■□□□ 1.24
CLN3-263ENST00000637871 CCDC125Q86Z20 511 aa22.82■■□□□ 1.24
CLN3-263ENST00000637871 SMARCC1Q92922 1105 aaPredicted RBP22.82■■□□□ 1.24
CLN3-263ENST00000637871 CAMKK2Q96RR4 588 aa22.82■■□□□ 1.24
CLN3-263ENST00000637871 LOC102724428A0A0B4J2F2 783 aa22.81■■□□□ 1.24
CLN3-263ENST00000637871 PLSCR1O15162 318 aa22.81■■□□□ 1.24
CLN3-263ENST00000637871 GNAI2P04899 355 aa22.81■■□□□ 1.24
CLN3-263ENST00000637871 SIK1P57059 783 aa22.81■■□□□ 1.24
CLN3-263ENST00000637871 FKBP5Q13451 457 aaPredicted RBP22.81■■□□□ 1.24
CLN3-263ENST00000637871 G2E3Q7L622 706 aa22.81■■□□□ 1.24
CLN3-263ENST00000637871 LRRC4BQ9NT99 713 aa22.81■■□□□ 1.24
CLN3-263ENST00000637871 PRAMEF22A3QJZ6 481 aa22.8■■□□□ 1.24
CLN3-263ENST00000637871 TXNRD1Q16881 649 aa22.8■■□□□ 1.24
CLN3-263ENST00000637871 CCNL1Q9UK58 526 aaPredicted RBP22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms