RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 PTCD1O75127 700 aaKnown RBP15.54■□□□□ 0.08
CLN3-257ENST00000637110 U2AF1L5P0DN76 240 aaPredicted RBP15.54■□□□□ 0.08
CLN3-257ENST00000637110 GYS1P13807 737 aa15.54■□□□□ 0.08
CLN3-257ENST00000637110 U2AF1Q01081 240 aaKnown RBP eCLIP15.54■□□□□ 0.08
CLN3-257ENST00000637110 ARHGEF1Q92888 912 aaKnown RBP15.54■□□□□ 0.08
CLN3-257ENST00000637110 ZNF831Q5JPB2 1677 aa15.54■□□□□ 0.08
CLN3-257ENST00000637110 RNMTO43148 476 aaKnown RBP15.53■□□□□ 0.08
CLN3-257ENST00000637110 DDX10Q13206 875 aaKnown RBP15.53■□□□□ 0.08
CLN3-257ENST00000637110 LGR6Q9HBX8 967 aa15.53■□□□□ 0.08
CLN3-257ENST00000637110 COL3A1P02461 1466 aaPredicted RBP15.52■□□□□ 0.08
CLN3-257ENST00000637110 PRKAR2BP31323 418 aa15.52■□□□□ 0.08
CLN3-257ENST00000637110 RC3H1Q5TC82 1133 aaKnown RBP15.52■□□□□ 0.08
CLN3-257ENST00000637110 GAS2L2Q8NHY3 880 aa15.52■□□□□ 0.08
CLN3-257ENST00000637110 GLTPD2A6NH11 291 aa15.51■□□□□ 0.07
CLN3-257ENST00000637110 SLC52A2Q9HAB3 445 aa15.51■□□□□ 0.07
CLN3-257ENST00000637110 COL5A3P25940 1745 aaPredicted RBP15.51■□□□□ 0.07
CLN3-257ENST00000637110 CNTNAP4Q9C0A0 1308 aa15.5■□□□□ 0.07
CLN3-257ENST00000637110 GNAT3A8MTJ3 354 aa15.5■□□□□ 0.07
CLN3-257ENST00000637110 RPS6KA4O75676 772 aa15.5■□□□□ 0.07
CLN3-257ENST00000637110 LMNB1P20700 586 aa15.49■□□□□ 0.07
CLN3-257ENST00000637110 TEFQ10587 303 aa15.49■□□□□ 0.07
CLN3-257ENST00000637110 SLC4A9Q96Q91 983 aa15.49■□□□□ 0.07
CLN3-257ENST00000637110 PCDH10Q9P2E7 1040 aa15.49■□□□□ 0.07
CLN3-257ENST00000637110 SCN11AQ9UI33 1791 aa15.49■□□□□ 0.07
CLN3-257ENST00000637110 NEFMP07197 916 aa15.48■□□□□ 0.07
CLN3-257ENST00000637110 ZEB1P37275 1124 aaPredicted RBP15.48■□□□□ 0.07
CLN3-257ENST00000637110 SLC39A6Q13433 755 aa15.48■□□□□ 0.07
CLN3-257ENST00000637110 RSPH6AQ9H0K4 717 aa15.48■□□□□ 0.07
CLN3-257ENST00000637110 PRDM10Q9NQV6 1147 aa15.48■□□□□ 0.07
CLN3-257ENST00000637110 TIAM2Q8IVF5 1701 aa15.47■□□□□ 0.07
CLN3-257ENST00000637110 TTC5Q8N0Z6 440 aa15.47■□□□□ 0.07
CLN3-257ENST00000637110 PHACTR3Q96KR7 559 aa15.47■□□□□ 0.07
CLN3-257ENST00000637110 CREBZFQ9NS37 354 aa15.47■□□□□ 0.07
CLN3-257ENST00000637110 CHRNA5P30532 468 aa15.46■□□□□ 0.07
CLN3-257ENST00000637110 RASSF7Q02833 373 aa15.46■□□□□ 0.07
CLN3-257ENST00000637110 RTF1Q92541 710 aaKnown RBP15.46■□□□□ 0.07
CLN3-257ENST00000637110 AIDAQ96BJ3 306 aa15.46■□□□□ 0.07
CLN3-257ENST00000637110 RALBP1Q15311 655 aa15.45■□□□□ 0.06
CLN3-257ENST00000637110 DPY19L2Q6NUT2 758 aa15.45■□□□□ 0.06
CLN3-257ENST00000637110 CCDC88AQ3V6T2 1871 aa15.45■□□□□ 0.06
CLN3-257ENST00000637110 MYH14Q7Z406 1995 aaKnown RBP15.45■□□□□ 0.06
CLN3-257ENST00000637110 FOXN1O15353 648 aa15.44■□□□□ 0.06
CLN3-257ENST00000637110 CRKLP46109 303 aaKnown RBP15.44■□□□□ 0.06
CLN3-257ENST00000637110 CTCFP49711 727 aaPredicted RBP15.44■□□□□ 0.06
CLN3-257ENST00000637110 DNAJC10Q8IXB1 793 aa15.44■□□□□ 0.06
CLN3-257ENST00000637110 IL17REQ8NFR9 667 aa15.44■□□□□ 0.06
CLN3-257ENST00000637110 MKRN1Q9UHC7 482 aaKnown RBP15.44■□□□□ 0.06
CLN3-257ENST00000637110 USP42Q9H9J4 1324 aaKnown RBP15.43■□□□□ 0.06
CLN3-257ENST00000637110 VIRMAQ69YN4 1812 aaKnown RBP15.43■□□□□ 0.06
CLN3-257ENST00000637110 DDR1Q08345 913 aa15.43■□□□□ 0.06
CLN3-257ENST00000637110 FKBP8Q14318 412 aa15.43■□□□□ 0.06
CLN3-257ENST00000637110 MRC1P22897 1456 aa15.41■□□□□ 0.06
CLN3-257ENST00000637110 POLRMTO00411 1230 aaKnown RBP15.41■□□□□ 0.06
CLN3-257ENST00000637110 CHADLQ6NUI6 762 aa15.41■□□□□ 0.06
CLN3-257ENST00000637110 PNNQ9H307 717 aaKnown RBP15.41■□□□□ 0.06
CLN3-257ENST00000637110 SRP68Q9UHB9 627 aaKnown RBP15.41■□□□□ 0.06
CLN3-257ENST00000637110 DLEC1Q9Y238 1755 aa15.41■□□□□ 0.06
CLN3-257ENST00000637110 CNTNAP1P78357 1384 aa15.4■□□□□ 0.06
CLN3-257ENST00000637110 BTBD11A6QL63 1104 aa15.4■□□□□ 0.06
CLN3-257ENST00000637110 FAM161AQ3B820 660 aa15.4■□□□□ 0.06
CLN3-257ENST00000637110 MCM10Q7L590 875 aa15.4■□□□□ 0.06
CLN3-257ENST00000637110 MAPK8IP3Q9UPT6 1336 aa15.4■□□□□ 0.06
CLN3-257ENST00000637110 ZPR1O75312 459 aa15.39■□□□□ 0.05
CLN3-257ENST00000637110 DCTN1Q14203 1278 aa15.39■□□□□ 0.05
CLN3-257ENST00000637110 INTS5Q6P9B9 1019 aaKnown RBP15.39■□□□□ 0.05
CLN3-257ENST00000637110 ZNF790Q6PG37 636 aa15.39■□□□□ 0.05
CLN3-257ENST00000637110 TTLL6Q8N841 843 aa15.39■□□□□ 0.05
CLN3-257ENST00000637110 POTECB2RU33 542 aa15.38■□□□□ 0.05
CLN3-257ENST00000637110 STARD3NLO95772 234 aa15.38■□□□□ 0.05
CLN3-257ENST00000637110 CYP19A1P11511 503 aaPredicted RBP15.38■□□□□ 0.05
CLN3-257ENST00000637110 CANXP27824 592 aaKnown RBP15.38■□□□□ 0.05
CLN3-257ENST00000637110 TM4SF1P30408 202 aa15.38■□□□□ 0.05
CLN3-257ENST00000637110 VSIG10Q8N0Z9 540 aa15.38■□□□□ 0.05
CLN3-257ENST00000637110 DICER1Q9UPY3 1922 aaKnown RBP15.38■□□□□ 0.05
CLN3-257ENST00000637110 MYBBP1AQ9BQG0 1328 aaKnown RBP15.38■□□□□ 0.05
CLN3-257ENST00000637110 TJP1Q07157 1748 aa15.37■□□□□ 0.05
CLN3-257ENST00000637110 ZNF496Q96IT1 587 aaPredicted RBP15.37■□□□□ 0.05
CLN3-257ENST00000637110 FMNL2Q96PY5 1086 aa15.37■□□□□ 0.05
CLN3-257ENST00000637110 ZNF330Q9Y3S2 320 aaPredicted RBP15.37■□□□□ 0.05
CLN3-257ENST00000637110 AFDNP55196 1824 aaKnown RBP15.37■□□□□ 0.05
CLN3-257ENST00000637110 ADAMTS7Q9UKP4 1686 aa15.37■□□□□ 0.05
CLN3-257ENST00000637110 HTATSF1O43719 755 aaKnown RBP15.36■□□□□ 0.05
CLN3-257ENST00000637110 NPM2Q86SE8 214 aaKnown RBP15.36■□□□□ 0.05
CLN3-257ENST00000637110 ABHD8Q96I13 439 aa15.36■□□□□ 0.05
CLN3-257ENST00000637110 TEX13AQ9BXU3 409 aaPredicted RBP15.36■□□□□ 0.05
CLN3-257ENST00000637110 CEMIPQ8WUJ3 1361 aa15.36■□□□□ 0.05
CLN3-257ENST00000637110 KCNQ3O43525 872 aa15.35■□□□□ 0.05
CLN3-257ENST00000637110 LBX1P52954 281 aa15.35■□□□□ 0.05
CLN3-257ENST00000637110 ERFEQ4G0M1 354 aa15.35■□□□□ 0.05
CLN3-257ENST00000637110 ZBTB1Q9Y2K1 713 aa15.35■□□□□ 0.05
CLN3-257ENST00000637110 HEG1Q9ULI3 1381 aa15.35■□□□□ 0.05
CLN3-257ENST00000637110 NRXN2Q9P2S2 1712 aa15.34■□□□□ 0.05
CLN3-257ENST00000637110 H0YIN7 160 aa15.34■□□□□ 0.05
CLN3-257ENST00000637110 NFKBIEO00221 500 aa15.34■□□□□ 0.05
CLN3-257ENST00000637110 MLLT1Q03111 559 aaPredicted RBP15.34■□□□□ 0.05
CLN3-257ENST00000637110 WDR43Q15061 677 aaKnown RBP eCLIP15.34■□□□□ 0.05
CLN3-257ENST00000637110 NFE2L2Q16236 605 aa15.34■□□□□ 0.05
CLN3-257ENST00000637110 USPL1Q5W0Q7 1092 aa15.34■□□□□ 0.05
CLN3-257ENST00000637110 WBP1LQ9NX94 342 aa15.34■□□□□ 0.05
CLN3-257ENST00000637110 SOS1Q07889 1333 aaPredicted RBP15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms