RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 TMOD3Q9NYL9 352 aa13.35□□□□□ -0.27
CLN3-248ENST00000636355 TJP1Q07157 1748 aa13.35□□□□□ -0.27
CLN3-248ENST00000636355 ATRNO75882 1429 aa13.34□□□□□ -0.27
CLN3-248ENST00000636355 ZBTB7BO15156 539 aaPredicted RBP13.34□□□□□ -0.27
CLN3-248ENST00000636355 KCNQ3O43525 872 aa13.34□□□□□ -0.27
CLN3-248ENST00000636355 DDB1Q16531 1140 aa13.34□□□□□ -0.27
CLN3-248ENST00000636355 VSIG10Q8N0Z9 540 aa13.34□□□□□ -0.27
CLN3-248ENST00000636355 ZNF496Q96IT1 587 aaPredicted RBP13.34□□□□□ -0.27
CLN3-248ENST00000636355 CHPF2Q9P2E5 772 aa13.34□□□□□ -0.27
CLN3-248ENST00000636355 USP35Q9P2H5 1018 aa13.34□□□□□ -0.27
CLN3-248ENST00000636355 DDX58O95786 925 aaKnown RBP13.33□□□□□ -0.28
CLN3-248ENST00000636355 DDX54Q8TDD1 881 aaKnown RBP13.33□□□□□ -0.28
CLN3-248ENST00000636355 UPF1Q92900 1129 aaKnown RBP eCLIP13.33□□□□□ -0.28
CLN3-248ENST00000636355 NGLY1Q96IV0 654 aa13.33□□□□□ -0.28
CLN3-248ENST00000636355 TCERG1O14776 1098 aaKnown RBP13.32□□□□□ -0.28
CLN3-248ENST00000636355 G2E3Q7L622 706 aa13.32□□□□□ -0.28
CLN3-248ENST00000636355 C8orf37Q96NL8 207 aa13.32□□□□□ -0.28
CLN3-248ENST00000636355 TEX13AQ9BXU3 409 aaPredicted RBP13.32□□□□□ -0.28
CLN3-248ENST00000636355 PCDHB15Q9Y5E8 787 aa13.32□□□□□ -0.28
CLN3-248ENST00000636355 AFDNP55196 1824 aaKnown RBP13.32□□□□□ -0.28
CLN3-248ENST00000636355 COL5A3P25940 1745 aaPredicted RBP13.31□□□□□ -0.28
CLN3-248ENST00000636355 GNAI3P08754 354 aa13.31□□□□□ -0.28
CLN3-248ENST00000636355 SLC39A6Q13433 755 aa13.31□□□□□ -0.28
CLN3-248ENST00000636355 ADCY9O60503 1353 aa13.31□□□□□ -0.28
CLN3-248ENST00000636355 ANKRD36CQ5JPF3 1778 aa13.3□□□□□ -0.28
CLN3-248ENST00000636355 EIF2S2P20042 333 aaKnown RBP13.3□□□□□ -0.28
CLN3-248ENST00000636355 DNAAF4Q8WXU2 420 aa13.3□□□□□ -0.28
CLN3-248ENST00000636355 HDAC5Q9UQL6 1122 aa13.3□□□□□ -0.28
CLN3-248ENST00000636355 SBF2Q86WG5 1849 aa13.29□□□□□ -0.28
CLN3-248ENST00000636355 ALDH1L1O75891 902 aa13.29□□□□□ -0.28
CLN3-248ENST00000636355 RPAP2Q8IXW5 612 aaPredicted RBP13.29□□□□□ -0.28
CLN3-248ENST00000636355 SMC5Q8IY18 1101 aa13.29□□□□□ -0.28
CLN3-248ENST00000636355 USP21Q9UK80 565 aa13.29□□□□□ -0.28
CLN3-248ENST00000636355 KAT6BQ8WYB5 2073 aa13.28□□□□□ -0.28
CLN3-248ENST00000636355 PDIA6Q15084 440 aa13.28□□□□□ -0.28
CLN3-248ENST00000636355 MEX3CQ5U5Q3 659 aaKnown RBP13.28□□□□□ -0.28
CLN3-248ENST00000636355 KSR2Q6VAB6 950 aa13.28□□□□□ -0.28
CLN3-248ENST00000636355 GCC1Q96CN9 775 aa13.28□□□□□ -0.28
CLN3-248ENST00000636355 SRCIN1Q9C0H9 1055 aa13.28□□□□□ -0.28
CLN3-248ENST00000636355 CCDC9Q9Y3X0 531 aaKnown RBP13.28□□□□□ -0.28
CLN3-248ENST00000636355 BTAF1O14981 1849 aa13.27□□□□□ -0.28
CLN3-248ENST00000636355 HMMRO75330 724 aa13.27□□□□□ -0.29
CLN3-248ENST00000636355 IGHDP01880 384 aa13.27□□□□□ -0.29
CLN3-248ENST00000636355 LRP10Q7Z4F1 713 aa13.27□□□□□ -0.29
CLN3-248ENST00000636355 PIGBQ92521 554 aa13.27□□□□□ -0.29
CLN3-248ENST00000636355 NECTIN2Q92692 538 aa13.27□□□□□ -0.29
CLN3-248ENST00000636355 PHAXQ9H814 394 aaKnown RBP13.27□□□□□ -0.29
CLN3-248ENST00000636355 F6X3S4 739 aa13.26□□□□□ -0.29
CLN3-248ENST00000636355 LY75O60449 1722 aa13.26□□□□□ -0.29
CLN3-248ENST00000636355 COL15A1P39059 1388 aa13.26□□□□□ -0.29
CLN3-248ENST00000636355 AFF2P51816 1311 aa13.26□□□□□ -0.29
CLN3-248ENST00000636355 SLC4A10Q6U841 1118 aa13.26□□□□□ -0.29
CLN3-248ENST00000636355 ANKRD44Q8N8A2 993 aa13.26□□□□□ -0.29
CLN3-248ENST00000636355 LINS1Q8NG48 757 aa13.26□□□□□ -0.29
CLN3-248ENST00000636355 TRPC5Q9UL62 973 aaPredicted RBP13.26□□□□□ -0.29
CLN3-248ENST00000636355 PI4KAP2A4QPH2 592 aa13.25□□□□□ -0.29
CLN3-248ENST00000636355 STARD3NLO95772 234 aa13.25□□□□□ -0.29
CLN3-248ENST00000636355 GNAI2P04899 355 aa13.25□□□□□ -0.29
CLN3-248ENST00000636355 PROSER3Q2NL68 480 aa13.25□□□□□ -0.29
CLN3-248ENST00000636355 BEND3Q5T5X7 828 aa13.25□□□□□ -0.29
CLN3-248ENST00000636355 PI4KAP1Q8N8J0 262 aa13.25□□□□□ -0.29
CLN3-248ENST00000636355 SMARCC1Q92922 1105 aaPredicted RBP13.25□□□□□ -0.29
CLN3-248ENST00000636355 MEIS3Q99687 375 aa13.25□□□□□ -0.29
CLN3-248ENST00000636355 ATG3Q9NT62 314 aa13.25□□□□□ -0.29
CLN3-248ENST00000636355 UTYO14607 1347 aa13.24□□□□□ -0.29
CLN3-248ENST00000636355 PRAMEF22A3QJZ6 481 aa13.24□□□□□ -0.29
CLN3-248ENST00000636355 ONECUT3O60422 494 aaPredicted RBP13.24□□□□□ -0.29
CLN3-248ENST00000636355 UBTFL1P0CB47 393 aaPredicted RBP13.24□□□□□ -0.29
CLN3-248ENST00000636355 NEXNQ0ZGT2 675 aa13.24□□□□□ -0.29
CLN3-248ENST00000636355 FAM98CQ17RN3 349 aaKnown RBP13.24□□□□□ -0.29
CLN3-248ENST00000636355 CEP85Q6P2H3 762 aa13.24□□□□□ -0.29
CLN3-248ENST00000636355 MARCH10Q8NA82 808 aaPredicted RBP13.24□□□□□ -0.29
CLN3-248ENST00000636355 GJD4Q96KN9 370 aaPredicted RBP13.24□□□□□ -0.29
CLN3-248ENST00000636355 BCORQ6W2J9 1755 aa13.24□□□□□ -0.29
CLN3-248ENST00000636355 PLBD2Q8NHP8 589 aa13.23□□□□□ -0.29
CLN3-248ENST00000636355 MAP3K2Q9Y2U5 619 aa13.23□□□□□ -0.29
CLN3-248ENST00000636355 USP16Q9Y5T5 823 aa13.23□□□□□ -0.29
CLN3-248ENST00000636355 ZNF772Q68DY9 489 aaPredicted RBP13.22□□□□□ -0.29
CLN3-248ENST00000636355 METTL22Q9BUU2 404 aaPredicted RBP13.22□□□□□ -0.29
CLN3-248ENST00000636355 USP44Q9H0E7 712 aa13.22□□□□□ -0.29
CLN3-248ENST00000636355 ASAP1Q9ULH1 1129 aa13.22□□□□□ -0.29
CLN3-248ENST00000636355 SCN7AQ01118 1682 aa13.21□□□□□ -0.29
CLN3-248ENST00000636355 PALLDQ8WX93 1383 aa13.21□□□□□ -0.29
CLN3-248ENST00000636355 BRWD3Q6RI45 1802 aa13.21□□□□□ -0.29
CLN3-248ENST00000636355 TAF1LQ8IZX4 1826 aa13.21□□□□□ -0.29
CLN3-248ENST00000636355 PTCD1O75127 700 aaKnown RBP13.21□□□□□ -0.29
CLN3-248ENST00000636355 NUCB1Q02818 461 aa13.21□□□□□ -0.29
CLN3-248ENST00000636355 MTX1Q13505 466 aa13.21□□□□□ -0.29
CLN3-248ENST00000636355 ANKRD13DQ6ZTN6 518 aa13.21□□□□□ -0.29
CLN3-248ENST00000636355 SIRT2Q8IXJ6 389 aa13.21□□□□□ -0.29
CLN3-248ENST00000636355 XAGE3Q8WTP9 111 aa13.21□□□□□ -0.29
CLN3-248ENST00000636355 ANXA1P04083 346 aa13.2□□□□□ -0.3
CLN3-248ENST00000636355 PRIM1P49642 420 aaKnown RBP13.2□□□□□ -0.3
CLN3-248ENST00000636355 COPS6Q7L5N1 327 aa13.2□□□□□ -0.3
CLN3-248ENST00000636355 RIC3Q7Z5B4 369 aa13.2□□□□□ -0.3
CLN3-248ENST00000636355 DCTPP1Q9H773 170 aa13.2□□□□□ -0.3
CLN3-248ENST00000636355 PDZRN3Q9UPQ7 1066 aa13.2□□□□□ -0.3
CLN3-248ENST00000636355 NUP98P52948 1817 aa13.2□□□□□ -0.3
CLN3-248ENST00000636355 RGPD3A6NKT7 1758 aaPredicted RBP13.2□□□□□ -0.3
CLN3-248ENST00000636355 LAMB2P55268 1798 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms