RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 HRH3Q9Y5N1 445 aa2.97□□□□□ -1.93
SMARCB1-209ENST00000635578 BTBD11A6QL63 1104 aa2.96□□□□□ -1.94
SMARCB1-209ENST00000635578 MAPTP10636 758 aaKnown RBP2.96□□□□□ -1.94
SMARCB1-209ENST00000635578 ATP4AP20648 1035 aa2.96□□□□□ -1.94
SMARCB1-209ENST00000635578 NR1H3Q13133 447 aa2.96□□□□□ -1.94
SMARCB1-209ENST00000635578 PRRT3Q5FWE3 981 aa2.96□□□□□ -1.94
SMARCB1-209ENST00000635578 ESCO1Q5FWF5 840 aa2.96□□□□□ -1.94
SMARCB1-209ENST00000635578 PRSS36Q5K4E3 855 aa2.96□□□□□ -1.94
SMARCB1-209ENST00000635578 CCDC85AQ96PX6 553 aaPredicted RBP2.96□□□□□ -1.94
SMARCB1-209ENST00000635578 CRISPLD1Q9H336 500 aa2.96□□□□□ -1.94
SMARCB1-209ENST00000635578 DNAAF2Q9NVR5 837 aaKnown RBP2.96□□□□□ -1.94
SMARCB1-209ENST00000635578 HCN2Q9UL51 889 aa2.96□□□□□ -1.94
SMARCB1-209ENST00000635578 A0A1W2PNR3 127 aa2.95□□□□□ -1.94
SMARCB1-209ENST00000635578 TNP2Q05952 138 aa2.95□□□□□ -1.94
SMARCB1-209ENST00000635578 PPARGC1BQ86YN6 1023 aaKnown RBP2.95□□□□□ -1.94
SMARCB1-209ENST00000635578 GJD4Q96KN9 370 aaPredicted RBP2.95□□□□□ -1.94
SMARCB1-209ENST00000635578 KRTAP9-9Q9BYP9 154 aa2.95□□□□□ -1.94
SMARCB1-209ENST00000635578 KRTAP9-4Q9BYQ2 154 aa2.95□□□□□ -1.94
SMARCB1-209ENST00000635578 ETNK1Q9HBU6 452 aa2.95□□□□□ -1.94
SMARCB1-209ENST00000635578 ZNF330Q9Y3S2 320 aaPredicted RBP2.95□□□□□ -1.94
SMARCB1-209ENST00000635578 GJA3Q9Y6H8 435 aa2.95□□□□□ -1.94
SMARCB1-209ENST00000635578 SPDYE3A6NKU9 549 aa2.94□□□□□ -1.94
SMARCB1-209ENST00000635578 MCCD1P59942 119 aaPredicted RBP2.94□□□□□ -1.94
SMARCB1-209ENST00000635578 GRIK4Q16099 956 aa2.94□□□□□ -1.94
SMARCB1-209ENST00000635578 TSGA10IPQ3SY00 556 aa2.94□□□□□ -1.94
SMARCB1-209ENST00000635578 TMEM259Q4ZIN3 620 aa2.94□□□□□ -1.94
SMARCB1-209ENST00000635578 OXLD1Q5BKU9 147 aa2.94□□□□□ -1.94
SMARCB1-209ENST00000635578 ZNF468Q5VIY5 522 aaPredicted RBP2.94□□□□□ -1.94
SMARCB1-209ENST00000635578 NLRP8Q86W28 1048 aa2.94□□□□□ -1.94
SMARCB1-209ENST00000635578 ZNF592Q92610 1267 aa2.94□□□□□ -1.94
SMARCB1-209ENST00000635578 NIFKQ9BYG3 293 aaKnown RBP2.94□□□□□ -1.94
SMARCB1-209ENST00000635578 STRN4Q9NRL3 753 aa2.94□□□□□ -1.94
SMARCB1-209ENST00000635578 DOLKQ9UPQ8 538 aa2.94□□□□□ -1.94
SMARCB1-209ENST00000635578 ELOA3CA0A087WX78 387 aaPredicted RBP2.93□□□□□ -1.94
SMARCB1-209ENST00000635578 ELOA3DA6NLF2 546 aaPredicted RBP2.93□□□□□ -1.94
SMARCB1-209ENST00000635578 M0R082 166 aa2.93□□□□□ -1.94
SMARCB1-209ENST00000635578 TATP17735 454 aaPredicted RBP2.93□□□□□ -1.94
SMARCB1-209ENST00000635578 ALAS2P22557 587 aa2.93□□□□□ -1.94
SMARCB1-209ENST00000635578 TRIM28Q13263 835 aaKnown RBP2.93□□□□□ -1.94
SMARCB1-209ENST00000635578 LRP8Q14114 963 aa2.93□□□□□ -1.94
SMARCB1-209ENST00000635578 NBPF1Q3BBV0 1214 aa2.93□□□□□ -1.94
SMARCB1-209ENST00000635578 ELOA3BQ3SY89 546 aa2.93□□□□□ -1.94
SMARCB1-209ENST00000635578 BICDL1Q6ZP65 573 aa2.93□□□□□ -1.94
SMARCB1-209ENST00000635578 C8orf86Q6ZUL3 223 aa2.93□□□□□ -1.94
SMARCB1-209ENST00000635578 SYT9Q86SS6 491 aa2.93□□□□□ -1.94
SMARCB1-209ENST00000635578 KRTAP19-1Q8IUB9 90 aa2.93□□□□□ -1.94
SMARCB1-209ENST00000635578 ELOA3Q8NG57 546 aa2.93□□□□□ -1.94
SMARCB1-209ENST00000635578 ZNF417Q8TAU3 575 aa2.93□□□□□ -1.94
SMARCB1-209ENST00000635578 PCMTD1Q96MG8 357 aaPredicted RBP2.93□□□□□ -1.94
SMARCB1-209ENST00000635578 ZNF587Q96SQ5 575 aaPredicted RBP2.93□□□□□ -1.94
SMARCB1-209ENST00000635578 AVENQ9NQS1 362 aaPredicted RBP2.93□□□□□ -1.94
SMARCB1-209ENST00000635578 CEP126Q9P2H0 1117 aa2.93□□□□□ -1.94
SMARCB1-209ENST00000635578 SERTAD1Q9UHV2 236 aa2.93□□□□□ -1.94
SMARCB1-209ENST00000635578 HYAL3O43820 417 aaPredicted RBP2.92□□□□□ -1.94
SMARCB1-209ENST00000635578 GPR37L1O60883 481 aa2.92□□□□□ -1.94
SMARCB1-209ENST00000635578 GDF10P55107 478 aa2.92□□□□□ -1.94
SMARCB1-209ENST00000635578 FAM182BQ5T319 152 aa2.92□□□□□ -1.94
SMARCB1-209ENST00000635578 C1orf216Q8TAB5 229 aa2.92□□□□□ -1.94
SMARCB1-209ENST00000635578 NACC1Q96RE7 527 aa2.92□□□□□ -1.94
SMARCB1-209ENST00000635578 GOLGA2P5Q9HBQ8 144 aa2.92□□□□□ -1.94
SMARCB1-209ENST00000635578 MARK1Q9P0L2 795 aa2.92□□□□□ -1.94
SMARCB1-209ENST00000635578 PARP3Q9Y6F1 533 aa2.92□□□□□ -1.94
SMARCB1-209ENST00000635578 KRTAP4-8A0A0G2JLE6 195 aa2.91□□□□□ -1.94
SMARCB1-209ENST00000635578 ALBP02768 609 aa2.91□□□□□ -1.94
SMARCB1-209ENST00000635578 FAM157BP0CG42 384 aa2.91□□□□□ -1.94
SMARCB1-209ENST00000635578 SCNN1DP51172 638 aa2.91□□□□□ -1.94
SMARCB1-209ENST00000635578 USP4Q13107 963 aa2.91□□□□□ -1.94
SMARCB1-209ENST00000635578 SLFNL1Q499Z3 407 aa2.91□□□□□ -1.94
SMARCB1-209ENST00000635578 RAB44Q7Z6P3 723 aaPredicted RBP2.91□□□□□ -1.94
SMARCB1-209ENST00000635578 ZIC5Q96T25 663 aa2.91□□□□□ -1.94
SMARCB1-209ENST00000635578 CABP1Q9NZU7 370 aa2.91□□□□□ -1.94
SMARCB1-209ENST00000635578 USP3Q9Y6I4 520 aa2.91□□□□□ -1.94
SMARCB1-209ENST00000635578 NDUFB9Q9Y6M9 179 aa2.91□□□□□ -1.94
SMARCB1-209ENST00000635578 INHAP05111 366 aa2.9□□□□□ -1.95
SMARCB1-209ENST00000635578 SMTNP53814 917 aa2.9□□□□□ -1.95
SMARCB1-209ENST00000635578 TBC1D8BQ0IIM8 1120 aa2.9□□□□□ -1.95
SMARCB1-209ENST00000635578 MBTPS1Q14703 1052 aa2.9□□□□□ -1.95
SMARCB1-209ENST00000635578 TRAPPC3LQ5T215 181 aa2.9□□□□□ -1.95
SMARCB1-209ENST00000635578 LRRC69Q6ZNQ3 347 aa2.9□□□□□ -1.95
SMARCB1-209ENST00000635578 MTMR14Q8NCE2 650 aa2.9□□□□□ -1.95
SMARCB1-209ENST00000635578 TP53INP1Q96A56 240 aa2.9□□□□□ -1.95
SMARCB1-209ENST00000635578 STARD13Q9Y3M8 1113 aa2.9□□□□□ -1.95
SMARCB1-209ENST00000635578 EFSO43281 561 aa2.89□□□□□ -1.95
SMARCB1-209ENST00000635578 TXLNAP40222 546 aa2.89□□□□□ -1.95
SMARCB1-209ENST00000635578 ADH7P40394 386 aa2.89□□□□□ -1.95
SMARCB1-209ENST00000635578 COL9A3Q14050 684 aaPredicted RBP2.89□□□□□ -1.95
SMARCB1-209ENST00000635578 SHISA2Q6UWI4 295 aa2.89□□□□□ -1.95
SMARCB1-209ENST00000635578 MICALL1Q8N3F8 863 aa2.89□□□□□ -1.95
SMARCB1-209ENST00000635578 SLC30A3Q99726 388 aa2.89□□□□□ -1.95
SMARCB1-209ENST00000635578 USP21Q9UK80 565 aa2.89□□□□□ -1.95
SMARCB1-209ENST00000635578 C9orf172C9J069 976 aa2.88□□□□□ -1.95
SMARCB1-209ENST00000635578 CDK2AP1O14519 115 aa2.88□□□□□ -1.95
SMARCB1-209ENST00000635578 SIN3BO75182 1162 aa2.88□□□□□ -1.95
SMARCB1-209ENST00000635578 H2AFB1P0C5Y9 115 aa2.88□□□□□ -1.95
SMARCB1-209ENST00000635578 H2AFB2P0C5Z0 115 aa2.88□□□□□ -1.95
SMARCB1-209ENST00000635578 NID1P14543 1247 aa2.88□□□□□ -1.95
SMARCB1-209ENST00000635578 SELPP16109 830 aa2.88□□□□□ -1.95
SMARCB1-209ENST00000635578 SPEM2Q0P670 501 aa2.88□□□□□ -1.95
SMARCB1-209ENST00000635578 SFSWAPQ12872 951 aaKnown RBP2.88□□□□□ -1.95
SMARCB1-209ENST00000635578 LAMC2Q13753 1193 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms