RNA–Protein interactions for RNA: ENST00000631420.1

LIMS3-206, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 1,580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-206ENST00000631420 TEX13AQ9BXU3 409 aaPredicted RBP18.94■□□□□ 0.62
LIMS3-206ENST00000631420 NOB1Q9ULX3 412 aaKnown RBP18.93■□□□□ 0.62
LIMS3-206ENST00000631420 C5P01031 1676 aa18.93■□□□□ 0.62
LIMS3-206ENST00000631420 BRPF1P55201 1214 aaPredicted RBP18.93■□□□□ 0.62
LIMS3-206ENST00000631420 PHAXQ9H814 394 aaKnown RBP18.93■□□□□ 0.62
LIMS3-206ENST00000631420 DBF4Q9UBU7 674 aaPredicted RBP18.93■□□□□ 0.62
LIMS3-206ENST00000631420 CCNL1Q9UK58 526 aaPredicted RBP18.93■□□□□ 0.62
LIMS3-206ENST00000631420 RNF123Q5XPI4 1314 aa18.92■□□□□ 0.62
LIMS3-206ENST00000631420 NBPF26B4DH59 902 aa18.92■□□□□ 0.62
LIMS3-206ENST00000631420 STARD3NLO95772 234 aa18.92■□□□□ 0.62
LIMS3-206ENST00000631420 MYL6BP14649 208 aa18.92■□□□□ 0.62
LIMS3-206ENST00000631420 RRP1P56182 461 aaKnown RBP18.92■□□□□ 0.62
LIMS3-206ENST00000631420 NBPF14Q5TI25 921 aa18.92■□□□□ 0.62
LIMS3-206ENST00000631420 NBPF10Q6P3W6 841 aaKnown RBP18.92■□□□□ 0.62
LIMS3-206ENST00000631420 PROM2Q8N271 834 aa18.92■□□□□ 0.62
LIMS3-206ENST00000631420 NBPF15Q8N660 670 aa18.92■□□□□ 0.62
LIMS3-206ENST00000631420 CHMP4AQ9BY43 222 aa18.92■□□□□ 0.62
LIMS3-206ENST00000631420 DDX21Q9NR30 783 aaKnown RBP eCLIP18.92■□□□□ 0.62
LIMS3-206ENST00000631420 LRRC4BQ9NT99 713 aa18.92■□□□□ 0.62
LIMS3-206ENST00000631420 LINC00116Q8NCU8 138 aa18.91■□□□□ 0.62
LIMS3-206ENST00000631420 TNNQ9UQP3 1299 aa18.91■□□□□ 0.62
LIMS3-206ENST00000631420 PLSCR1O15162 318 aa18.9■□□□□ 0.62
LIMS3-206ENST00000631420 TXNRD1Q16881 649 aa18.89■□□□□ 0.62
LIMS3-206ENST00000631420 LRP10Q7Z4F1 713 aa18.89■□□□□ 0.62
LIMS3-206ENST00000631420 CANXP27824 592 aaKnown RBP18.89■□□□□ 0.61
LIMS3-206ENST00000631420 CRKLP46109 303 aaKnown RBP18.89■□□□□ 0.61
LIMS3-206ENST00000631420 INTS5Q6P9B9 1019 aaKnown RBP18.89■□□□□ 0.61
LIMS3-206ENST00000631420 ZBTB1Q9Y2K1 713 aa18.89■□□□□ 0.61
LIMS3-206ENST00000631420 FLIIQ13045 1269 aa18.88■□□□□ 0.61
LIMS3-206ENST00000631420 C20orf194Q5TEA3 1177 aa18.88■□□□□ 0.61
LIMS3-206ENST00000631420 HYPKQ9NX55 129 aa18.88■□□□□ 0.61
LIMS3-206ENST00000631420 TJP1Q07157 1748 aa18.87■□□□□ 0.61
LIMS3-206ENST00000631420 IRX6P78412 446 aaPredicted RBP18.87■□□□□ 0.61
LIMS3-206ENST00000631420 AIMP1Q12904 312 aaKnown RBP18.87■□□□□ 0.61
LIMS3-206ENST00000631420 ZKSCAN2Q63HK3 967 aa18.87■□□□□ 0.61
LIMS3-206ENST00000631420 ERBB4Q15303 1308 aa18.87■□□□□ 0.61
LIMS3-206ENST00000631420 KIF16BQ96L93 1317 aa18.87■□□□□ 0.61
LIMS3-206ENST00000631420 EN1Q05925 392 aaPredicted RBP18.86■□□□□ 0.61
LIMS3-206ENST00000631420 COPS6Q7L5N1 327 aa18.86■□□□□ 0.61
LIMS3-206ENST00000631420 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.86■□□□□ 0.61
LIMS3-206ENST00000631420 CLUAP1Q96AJ1 413 aa18.86■□□□□ 0.61
LIMS3-206ENST00000631420 CCDC87Q9NVE4 849 aa18.86■□□□□ 0.61
LIMS3-206ENST00000631420 IPO8O15397 1037 aaKnown RBP18.85■□□□□ 0.61
LIMS3-206ENST00000631420 TRIM27P14373 513 aa18.85■□□□□ 0.61
LIMS3-206ENST00000631420 SLC27A3Q5K4L6 730 aa18.85■□□□□ 0.61
LIMS3-206ENST00000631420 ATF7IPQ6VMQ6 1270 aa18.85■□□□□ 0.61
LIMS3-206ENST00000631420 XAGE3Q8WTP9 111 aa18.85■□□□□ 0.61
LIMS3-206ENST00000631420 LY75O60449 1722 aa18.85■□□□□ 0.61
LIMS3-206ENST00000631420 FKBP5Q13451 457 aaPredicted RBP18.85■□□□□ 0.61
LIMS3-206ENST00000631420 EZH2Q15910 746 aaKnown RBP18.85■□□□□ 0.61
LIMS3-206ENST00000631420 SMIM5Q71RC9 77 aa18.85■□□□□ 0.61
LIMS3-206ENST00000631420 DEFB132Q7Z7B7 95 aa18.85■□□□□ 0.61
LIMS3-206ENST00000631420 ARHGAP45Q92619 1136 aa18.85■□□□□ 0.61
LIMS3-206ENST00000631420 ZNF330Q9Y3S2 320 aaPredicted RBP18.85■□□□□ 0.61
LIMS3-206ENST00000631420 LAMB4A4D0S4 1761 aa18.84■□□□□ 0.61
LIMS3-206ENST00000631420 F6X3S4 739 aa18.84■□□□□ 0.61
LIMS3-206ENST00000631420 RLBP1P12271 317 aa18.84■□□□□ 0.61
LIMS3-206ENST00000631420 SF3B2Q13435 895 aaKnown RBP18.84■□□□□ 0.61
LIMS3-206ENST00000631420 TTLL7Q6ZT98 887 aa18.84■□□□□ 0.61
LIMS3-206ENST00000631420 CAMKK2Q96RR4 588 aa18.84■□□□□ 0.61
LIMS3-206ENST00000631420 TNS1Q9HBL0 1735 aaKnown RBP18.83■□□□□ 0.6
LIMS3-206ENST00000631420 PANK1Q8TE04 598 aa18.83■□□□□ 0.6
LIMS3-206ENST00000631420 PTPRCP08575 1304 aa18.83■□□□□ 0.6
LIMS3-206ENST00000631420 IL6STP40189 918 aaPredicted RBP18.82■□□□□ 0.6
LIMS3-206ENST00000631420 EIF5P55010 431 aaKnown RBP18.82■□□□□ 0.6
LIMS3-206ENST00000631420 RC3H1Q5TC82 1133 aaKnown RBP18.82■□□□□ 0.6
LIMS3-206ENST00000631420 ILDR2Q71H61 639 aa18.82■□□□□ 0.6
LIMS3-206ENST00000631420 CNTNAP4Q9C0A0 1308 aa18.82■□□□□ 0.6
LIMS3-206ENST00000631420 ZNF831Q5JPB2 1677 aa18.82■□□□□ 0.6
LIMS3-206ENST00000631420 AMIGO3Q86WK7 504 aa18.81■□□□□ 0.6
LIMS3-206ENST00000631420 DZIP1LQ8IYY4 767 aaKnown RBP18.81■□□□□ 0.6
LIMS3-206ENST00000631420 API5Q9BZZ5 524 aaKnown RBP18.81■□□□□ 0.6
LIMS3-206ENST00000631420 CICQ96RK0 1608 aaPredicted RBP18.81■□□□□ 0.6
LIMS3-206ENST00000631420 PI4KAP2A4QPH2 592 aa18.81■□□□□ 0.6
LIMS3-206ENST00000631420 BAG6P46379 1132 aa18.81■□□□□ 0.6
LIMS3-206ENST00000631420 PI4KAP1Q8N8J0 262 aa18.81■□□□□ 0.6
LIMS3-206ENST00000631420 RPS6KA4O75676 772 aa18.8■□□□□ 0.6
LIMS3-206ENST00000631420 PDE3AQ14432 1141 aa18.8■□□□□ 0.6
LIMS3-206ENST00000631420 ANKRD13DQ6ZTN6 518 aa18.8■□□□□ 0.6
LIMS3-206ENST00000631420 CCDC125Q86Z20 511 aa18.8■□□□□ 0.6
LIMS3-206ENST00000631420 ARXQ96QS3 562 aa18.8■□□□□ 0.6
LIMS3-206ENST00000631420 GNPATO15228 680 aa18.79■□□□□ 0.6
LIMS3-206ENST00000631420 KSR2Q6VAB6 950 aa18.79■□□□□ 0.6
LIMS3-206ENST00000631420 UPF1Q92900 1129 aaKnown RBP eCLIP18.79■□□□□ 0.6
LIMS3-206ENST00000631420 TBC1D2BQ9UPU7 963 aa18.79■□□□□ 0.6
LIMS3-206ENST00000631420 MAP3K2Q9Y2U5 619 aa18.79■□□□□ 0.6
LIMS3-206ENST00000631420 ADCY9O60503 1353 aa18.79■□□□□ 0.6
LIMS3-206ENST00000631420 MYH14Q7Z406 1995 aaKnown RBP18.79■□□□□ 0.6
LIMS3-206ENST00000631420 COL5A3P25940 1745 aaPredicted RBP18.78■□□□□ 0.6
LIMS3-206ENST00000631420 SLC4A10Q6U841 1118 aa18.78■□□□□ 0.6
LIMS3-206ENST00000631420 RIC3Q7Z5B4 369 aa18.78■□□□□ 0.6
LIMS3-206ENST00000631420 FTSJ3Q8IY81 847 aaKnown RBP18.78■□□□□ 0.6
LIMS3-206ENST00000631420 TMEM57Q8N5G2 664 aa18.78■□□□□ 0.6
LIMS3-206ENST00000631420 AK7Q96M32 723 aa18.78■□□□□ 0.6
LIMS3-206ENST00000631420 COG6Q9Y2V7 657 aa18.78■□□□□ 0.6
LIMS3-206ENST00000631420 ABCC4O15439 1325 aa18.77■□□□□ 0.6
LIMS3-206ENST00000631420 DDX58O95786 925 aaKnown RBP18.77■□□□□ 0.6
LIMS3-206ENST00000631420 DNAAF4Q8WXU2 420 aa18.77■□□□□ 0.6
LIMS3-206ENST00000631420 CRBNQ96SW2 442 aa18.77■□□□□ 0.6
LIMS3-206ENST00000631420 ZBTB3Q9H5J0 574 aa18.77■□□□□ 0.6
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