RNA–Protein interactions for RNA: ENST00000628857.1

CNOT1-223, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 5 BASIC

Gene CNOT1, Length 291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-223	ENST00000628857	CRISPLD1	Q9H336	500 aa		6.07	□□□□□ -1.44
CNOT1-223	ENST00000628857	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	6.06	□□□□□ -1.44
CNOT1-223	ENST00000628857	WIPF1	O43516	503 aa		6.06	□□□□□ -1.44
CNOT1-223	ENST00000628857	IGFBP4	P22692	258 aa		6.06	□□□□□ -1.44
CNOT1-223	ENST00000628857	NBPF1	Q3BBV0	1214 aa		6.06	□□□□□ -1.44
CNOT1-223	ENST00000628857	C1orf53	Q5VUE5	145 aa		6.06	□□□□□ -1.44
CNOT1-223	ENST00000628857	SV2A	Q7L0J3	742 aa		6.06	□□□□□ -1.44
CNOT1-223	ENST00000628857	SLC9A9	Q8IVB4	645 aa		6.06	□□□□□ -1.44
CNOT1-223	ENST00000628857	TSEN2	Q8NCE0	465 aa	Known RBP	6.06	□□□□□ -1.44
CNOT1-223	ENST00000628857	NOVA2	Q9UNW9	492 aa	Known RBP	6.06	□□□□□ -1.44
CNOT1-223	ENST00000628857	CHMP3	Q9Y3E7	222 aa		6.06	□□□□□ -1.44
CNOT1-223	ENST00000628857	ATAD2	Q6PL18	1390 aa		6.06	□□□□□ -1.44
CNOT1-223	ENST00000628857	SERTM1	A2A2V5	107 aa		6.05	□□□□□ -1.44
CNOT1-223	ENST00000628857	WEE1	P30291	646 aa		6.05	□□□□□ -1.44
CNOT1-223	ENST00000628857	NLRP8	Q86W28	1048 aa		6.05	□□□□□ -1.44
CNOT1-223	ENST00000628857	L3MBTL2	Q969R5	705 aa		6.05	□□□□□ -1.44
CNOT1-223	ENST00000628857	CABP1	Q9NZU7	370 aa		6.05	□□□□□ -1.44
CNOT1-223	ENST00000628857	EML1	O00423	815 aa		6.04	□□□□□ -1.44
CNOT1-223	ENST00000628857	FOXO3	O43524	673 aa		6.04	□□□□□ -1.44
CNOT1-223	ENST00000628857	C21orf2	O43822	256 aa		6.04	□□□□□ -1.44
CNOT1-223	ENST00000628857	TAT	P17735	454 aa	Predicted RBP	6.04	□□□□□ -1.44
CNOT1-223	ENST00000628857	MSX1	P28360	303 aa		6.04	□□□□□ -1.44
CNOT1-223	ENST00000628857	FAM69C	Q0P6D2	419 aa		6.04	□□□□□ -1.44
CNOT1-223	ENST00000628857	DBN1	Q16643	649 aa		6.04	□□□□□ -1.44
CNOT1-223	ENST00000628857	FOXR1	Q6PIV2	292 aa		6.04	□□□□□ -1.44
CNOT1-223	ENST00000628857	ZDHHC1	Q8WTX9	485 aa		6.04	□□□□□ -1.44
CNOT1-223	ENST00000628857	C7orf43	Q8WVR3	580 aa		6.04	□□□□□ -1.44
CNOT1-223	ENST00000628857	C2orf49	Q9BVC5	232 aa	Predicted RBP	6.04	□□□□□ -1.44
CNOT1-223	ENST00000628857	CFHR5	Q9BXR6	569 aa		6.04	□□□□□ -1.44
CNOT1-223	ENST00000628857	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	6.04	□□□□□ -1.44
CNOT1-223	ENST00000628857	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	6.04	□□□□□ -1.44	1e-6	■■■■■ 38.5
CNOT1-223	ENST00000628857	USP3	Q9Y6I4	520 aa		6.04	□□□□□ -1.44
CNOT1-223	ENST00000628857	CSB-PGBD3	P0DP91	1061 aa		6.03	□□□□□ -1.44
CNOT1-223	ENST00000628857	PHKA2	P46019	1235 aa		6.03	□□□□□ -1.44
CNOT1-223	ENST00000628857	PLA2G4A	P47712	749 aa		6.03	□□□□□ -1.44
CNOT1-223	ENST00000628857	CDCA8	Q53HL2	280 aa		6.03	□□□□□ -1.44
CNOT1-223	ENST00000628857	EFHC2	Q5JST6	749 aa		6.03	□□□□□ -1.44
CNOT1-223	ENST00000628857	FIGNL1	Q6PIW4	674 aa		6.03	□□□□□ -1.44
CNOT1-223	ENST00000628857	PGBD3	Q8N328	593 aa		6.03	□□□□□ -1.44
CNOT1-223	ENST00000628857	VWA5B2	Q8N398	1253 aa		6.03	□□□□□ -1.44
CNOT1-223	ENST00000628857	CLP1	Q92989	425 aa	Known RBP	6.03	□□□□□ -1.44
CNOT1-223	ENST00000628857	GAS2L1	Q99501	681 aa	Predicted RBP	6.03	□□□□□ -1.44
CNOT1-223	ENST00000628857	HINFP	Q9BQA5	517 aa		6.03	□□□□□ -1.44
CNOT1-223	ENST00000628857	ZMIZ1	Q9ULJ6	1067 aa		6.03	□□□□□ -1.44
CNOT1-223	ENST00000628857	SUPT5H	O00267	1087 aa	Known RBP	6.02	□□□□□ -1.45
CNOT1-223	ENST00000628857	PPP1R12B	O60237	982 aa	Predicted RBP	6.02	□□□□□ -1.45
CNOT1-223	ENST00000628857	ATP4A	P20648	1035 aa		6.02	□□□□□ -1.45
CNOT1-223	ENST00000628857	HIF1A	Q16665	826 aa		6.02	□□□□□ -1.45
CNOT1-223	ENST00000628857	SAMD5	Q5TGI4	173 aa		6.02	□□□□□ -1.45
CNOT1-223	ENST00000628857	SCG3	Q8WXD2	468 aa	Known RBP	6.02	□□□□□ -1.45
CNOT1-223	ENST00000628857	COL26A1	Q96A83	441 aa		6.02	□□□□□ -1.45
CNOT1-223	ENST00000628857	ZNF837	Q96EG3	531 aa	Predicted RBP	6.02	□□□□□ -1.45
CNOT1-223	ENST00000628857	NUCKS1	Q9H1E3	243 aa	Known RBP	6.02	□□□□□ -1.45
CNOT1-223	ENST00000628857	CUEDC1	Q9NWM3	386 aa	Predicted RBP	6.02	□□□□□ -1.45
CNOT1-223	ENST00000628857	PHF24	Q9UPV7	400 aa		6.02	□□□□□ -1.45
CNOT1-223	ENST00000628857	ERBB4	Q15303	1308 aa		6.01	□□□□□ -1.45
CNOT1-223	ENST00000628857	PDE4C	Q08493	712 aa		6.01	□□□□□ -1.45
CNOT1-223	ENST00000628857	UBAP2L	Q14157	1087 aa	Known RBP	6.01	□□□□□ -1.45
CNOT1-223	ENST00000628857	RIPOR1	Q6ZS17	1223 aa		6.01	□□□□□ -1.45
CNOT1-223	ENST00000628857	AIDA	Q96BJ3	306 aa		6.01	□□□□□ -1.45
CNOT1-223	ENST00000628857	ANKIB1	Q9P2G1	1089 aa		6.01	□□□□□ -1.45
CNOT1-223	ENST00000628857	VEGFB	P49765	207 aa		6	□□□□□ -1.45
CNOT1-223	ENST00000628857	LCE2C	Q5TA81	110 aa		6	□□□□□ -1.45
CNOT1-223	ENST00000628857	TMEM164	Q5U3C3	297 aa		6	□□□□□ -1.45
CNOT1-223	ENST00000628857	TRERF1	Q96PN7	1200 aa		6	□□□□□ -1.45
CNOT1-223	ENST00000628857	ZIC5	Q96T25	663 aa		6	□□□□□ -1.45
CNOT1-223	ENST00000628857	ZNF232	Q9UNY5	417 aa		6	□□□□□ -1.45
CNOT1-223	ENST00000628857		A0A1W2PNR3	127 aa		5.99	□□□□□ -1.45
CNOT1-223	ENST00000628857	LAMC2	Q13753	1193 aa		5.99	□□□□□ -1.45
CNOT1-223	ENST00000628857	OCLN	Q16625	522 aa		5.99	□□□□□ -1.45
CNOT1-223	ENST00000628857	GPR161	Q8N6U8	529 aa	Known RBP	5.99	□□□□□ -1.45
CNOT1-223	ENST00000628857	STK32A	Q8WU08	396 aa		5.99	□□□□□ -1.45
CNOT1-223	ENST00000628857	MYO19	Q96H55	970 aa		5.99	□□□□□ -1.45
CNOT1-223	ENST00000628857	NDFIP2	Q9NV92	336 aa		5.99	□□□□□ -1.45
CNOT1-223	ENST00000628857	UST	Q9Y2C2	406 aa		5.99	□□□□□ -1.45
CNOT1-223	ENST00000628857	PCDHGC4	Q9Y5F7	938 aa		5.99	□□□□□ -1.45
CNOT1-223	ENST00000628857	CDC14C	A4D256	554 aa		5.98	□□□□□ -1.45
CNOT1-223	ENST00000628857	THBS1	P07996	1170 aa		5.98	□□□□□ -1.45
CNOT1-223	ENST00000628857	GMPR	P36959	345 aa		5.98	□□□□□ -1.45
CNOT1-223	ENST00000628857	TXLNA	P40222	546 aa		5.98	□□□□□ -1.45
CNOT1-223	ENST00000628857	INSM1	Q01101	510 aa	Predicted RBP	5.98	□□□□□ -1.45
CNOT1-223	ENST00000628857	RTN1	Q16799	776 aa		5.98	□□□□□ -1.45
CNOT1-223	ENST00000628857	ARSJ	Q5FYB0	599 aa	Predicted RBP	5.98	□□□□□ -1.45
CNOT1-223	ENST00000628857	ALDH16A1	Q8IZ83	802 aa		5.98	□□□□□ -1.45
CNOT1-223	ENST00000628857	ZCCHC2	Q9C0B9	1178 aa	Known RBP	5.98	□□□□□ -1.45
CNOT1-223	ENST00000628857	GPAM	Q9HCL2	828 aa		5.98	□□□□□ -1.45
CNOT1-223	ENST00000628857	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	5.98	□□□□□ -1.45
CNOT1-223	ENST00000628857	TMEM88B	A6NKF7	163 aa		5.97	□□□□□ -1.45
CNOT1-223	ENST00000628857	PTCD1	O75127	700 aa	Known RBP	5.97	□□□□□ -1.45
CNOT1-223	ENST00000628857	FAM157B	P0CG42	384 aa		5.97	□□□□□ -1.45
CNOT1-223	ENST00000628857	SRSF11	Q05519	484 aa	Known RBP	5.97	□□□□□ -1.45
CNOT1-223	ENST00000628857	TBCEL	Q5QJ74	424 aa		5.97	□□□□□ -1.45
CNOT1-223	ENST00000628857	FAM182B	Q5T319	152 aa		5.97	□□□□□ -1.45
CNOT1-223	ENST00000628857	IER5	Q5VY09	327 aa		5.97	□□□□□ -1.45
CNOT1-223	ENST00000628857	BICDL1	Q6ZP65	573 aa		5.97	□□□□□ -1.45
CNOT1-223	ENST00000628857	GTPBP3	Q969Y2	492 aa	Known RBP	5.97	□□□□□ -1.45
CNOT1-223	ENST00000628857	COL25A1	Q9BXS0	654 aa	Predicted RBP	5.97	□□□□□ -1.45
CNOT1-223	ENST00000628857	PHACTR1	Q9C0D0	580 aa		5.97	□□□□□ -1.45
CNOT1-223	ENST00000628857	RUBCNL	Q9H714	662 aa		5.97	□□□□□ -1.45
CNOT1-223	ENST00000628857	C11orf16	Q9NQ32	467 aa		5.97	□□□□□ -1.45

Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms