RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.26□□□□□ -0.451e-6■■■■□ 20.7
PDLIM5-223ENST00000627587 LAS1LQ9Y4W2 734 aaKnown RBP12.26□□□□□ -0.45
PDLIM5-223ENST00000627587 KDM3BQ7LBC6 1761 aa12.26□□□□□ -0.45
PDLIM5-223ENST00000627587 CHL1O00533 1208 aa12.25□□□□□ -0.45
PDLIM5-223ENST00000627587 CYP27B1O15528 508 aa12.25□□□□□ -0.45
PDLIM5-223ENST00000627587 CT47B1P0C2W7 299 aaPredicted RBP12.25□□□□□ -0.45
PDLIM5-223ENST00000627587 TSPYL6Q8N831 410 aa12.25□□□□□ -0.45
PDLIM5-223ENST00000627587 AK7Q96M32 723 aa12.25□□□□□ -0.45
PDLIM5-223ENST00000627587 PPP4R2Q9NY27 417 aa12.25□□□□□ -0.45
PDLIM5-223ENST00000627587 CEMIPQ8WUJ3 1361 aa12.25□□□□□ -0.45
PDLIM5-223ENST00000627587 SCN11AQ9UI33 1791 aa12.25□□□□□ -0.45
PDLIM5-223ENST00000627587 GNAT3A8MTJ3 354 aa12.25□□□□□ -0.45
PDLIM5-223ENST00000627587 HTATSF1O43719 755 aaKnown RBP12.25□□□□□ -0.45
PDLIM5-223ENST00000627587 BCL2L13Q9BXK5 485 aa12.25□□□□□ -0.45
PDLIM5-223ENST00000627587 C5P01031 1676 aa12.24□□□□□ -0.45
PDLIM5-223ENST00000627587 YBX3P16989 372 aaKnown RBP eCLIP12.24□□□□□ -0.456e-7■■□□□ 12.3
PDLIM5-223ENST00000627587 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.24□□□□□ -0.45
PDLIM5-223ENST00000627587 C8orf58Q8NAV2 365 aa12.23□□□□□ -0.45
PDLIM5-223ENST00000627587 SSH1Q8WYL5 1049 aa12.23□□□□□ -0.45
PDLIM5-223ENST00000627587 CRBNQ96SW2 442 aa12.23□□□□□ -0.45
PDLIM5-223ENST00000627587 TNNQ9UQP3 1299 aa12.23□□□□□ -0.45
PDLIM5-223ENST00000627587 TAF1LQ8IZX4 1826 aa12.23□□□□□ -0.45
PDLIM5-223ENST00000627587 VAMP4O75379 141 aa12.23□□□□□ -0.45
PDLIM5-223ENST00000627587 SSFA2P28290 1259 aa12.23□□□□□ -0.45
PDLIM5-223ENST00000627587 KRT24Q2M2I5 525 aa12.23□□□□□ -0.45
PDLIM5-223ENST00000627587 MSL1Q68DK7 614 aa12.23□□□□□ -0.45
PDLIM5-223ENST00000627587 RTF1Q92541 710 aaKnown RBP12.23□□□□□ -0.45
PDLIM5-223ENST00000627587 B4GALNT3Q6L9W6 998 aa12.22□□□□□ -0.45
PDLIM5-223ENST00000627587 PIGBQ92521 554 aa12.22□□□□□ -0.45
PDLIM5-223ENST00000627587 MIS18AQ9NYP9 233 aa12.22□□□□□ -0.45
PDLIM5-223ENST00000627587 PLEKHG2Q9H7P9 1386 aa12.21□□□□□ -0.45
PDLIM5-223ENST00000627587 IFNL2Q8IZJ0 200 aa12.21□□□□□ -0.45
PDLIM5-223ENST00000627587 LGR6Q9HBX8 967 aa12.21□□□□□ -0.45
PDLIM5-223ENST00000627587 TMOD3Q9NYL9 352 aa12.21□□□□□ -0.45
PDLIM5-223ENST00000627587 ITGB4P16144 1822 aa12.21□□□□□ -0.45
PDLIM5-223ENST00000627587 RLBP1P12271 317 aa12.21□□□□□ -0.46
PDLIM5-223ENST00000627587 AMOTQ4VCS5 1084 aa12.21□□□□□ -0.46
PDLIM5-223ENST00000627587 ZNF530Q6P9A1 599 aaPredicted RBP12.21□□□□□ -0.46
PDLIM5-223ENST00000627587 C4BP0C0L5 1744 aa12.2□□□□□ -0.46
PDLIM5-223ENST00000627587 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.2□□□□□ -0.46
PDLIM5-223ENST00000627587 LOC102724428A0A0B4J2F2 783 aa12.2□□□□□ -0.46
PDLIM5-223ENST00000627587 SIK1P57059 783 aa12.2□□□□□ -0.46
PDLIM5-223ENST00000627587 PLEKHO1Q53GL0 409 aaPredicted RBP12.2□□□□□ -0.46
PDLIM5-223ENST00000627587 AKAP4Q5JQC9 854 aa12.2□□□□□ -0.46
PDLIM5-223ENST00000627587 KDM6AO15550 1401 aaPredicted RBP12.19□□□□□ -0.46
PDLIM5-223ENST00000627587 ELL2O00472 640 aaPredicted RBP12.19□□□□□ -0.46
PDLIM5-223ENST00000627587 TWISTNBQ3B726 338 aaPredicted RBP12.19□□□□□ -0.46
PDLIM5-223ENST00000627587 ALDH1L2Q3SY69 923 aa12.19□□□□□ -0.46
PDLIM5-223ENST00000627587 GPBP1L1Q9HC44 474 aaPredicted RBP12.19□□□□□ -0.46
PDLIM5-223ENST00000627587 BRPF1P55201 1214 aaPredicted RBP12.19□□□□□ -0.46
PDLIM5-223ENST00000627587 PDE3AQ14432 1141 aa12.19□□□□□ -0.46
PDLIM5-223ENST00000627587 PANK1Q8TE04 598 aa12.19□□□□□ -0.46
PDLIM5-223ENST00000627587 FRAT1Q92837 279 aaPredicted RBP12.19□□□□□ -0.46
PDLIM5-223ENST00000627587 SMC4Q9NTJ3 1288 aa12.19□□□□□ -0.46
PDLIM5-223ENST00000627587 ATP10DQ9P241 1426 aa12.18□□□□□ -0.46
PDLIM5-223ENST00000627587 HSP90AB1P08238 724 aaKnown RBP12.18□□□□□ -0.46
PDLIM5-223ENST00000627587 PHKG2P15735 406 aa12.18□□□□□ -0.46
PDLIM5-223ENST00000627587 ATP6V1AP38606 617 aa12.18□□□□□ -0.46
PDLIM5-223ENST00000627587 ZNF428Q96B54 188 aa12.18□□□□□ -0.46
PDLIM5-223ENST00000627587 UBR3Q6ZT12 1888 aa12.18□□□□□ -0.46
PDLIM5-223ENST00000627587 CACNA1FO60840 1977 aa12.17□□□□□ -0.46
PDLIM5-223ENST00000627587 PHF14O94880 888 aa12.17□□□□□ -0.46
PDLIM5-223ENST00000627587 ZNF219Q9P2Y4 722 aaPredicted RBP12.17□□□□□ -0.46
PDLIM5-223ENST00000627587 TSPYL4Q9UJ04 414 aa12.17□□□□□ -0.46
PDLIM5-223ENST00000627587 TOGARAM1Q9Y4F4 1720 aa12.17□□□□□ -0.46
PDLIM5-223ENST00000627587 MRC1P22897 1456 aa12.17□□□□□ -0.46
PDLIM5-223ENST00000627587 ERVV-2B6SEH9 535 aa12.17□□□□□ -0.46
PDLIM5-223ENST00000627587 RNMTO43148 476 aaKnown RBP12.17□□□□□ -0.46
PDLIM5-223ENST00000627587 TRIM27P14373 513 aa12.17□□□□□ -0.46
PDLIM5-223ENST00000627587 CANXP27824 592 aaKnown RBP12.17□□□□□ -0.46
PDLIM5-223ENST00000627587 TAF7Q15545 349 aaPredicted RBP12.17□□□□□ -0.46
PDLIM5-223ENST00000627587 NLGN1Q8N2Q7 840 aa12.17□□□□□ -0.46
PDLIM5-223ENST00000627587 MRPL50Q8N5N7 158 aaKnown RBP12.17□□□□□ -0.46
PDLIM5-223ENST00000627587 LINC00116Q8NCU8 138 aa12.17□□□□□ -0.46
PDLIM5-223ENST00000627587 TGFB2P61812 414 aa12.16□□□□□ -0.46
PDLIM5-223ENST00000627587 TRAPPC3LQ5T215 181 aa12.16□□□□□ -0.46
PDLIM5-223ENST00000627587 RC3H1Q5TC82 1133 aaKnown RBP12.16□□□□□ -0.46
PDLIM5-223ENST00000627587 BABAM1Q9NWV8 329 aa12.16□□□□□ -0.46
PDLIM5-223ENST00000627587 ASAP1Q9ULH1 1129 aa12.16□□□□□ -0.46
PDLIM5-223ENST00000627587 NOB1Q9ULX3 412 aaKnown RBP12.16□□□□□ -0.46
PDLIM5-223ENST00000627587 UTRNP46939 3433 aa12.16□□□□□ -0.46
PDLIM5-223ENST00000627587 TCERG1O14776 1098 aaKnown RBP12.15□□□□□ -0.46
PDLIM5-223ENST00000627587 GNPATO15228 680 aa12.15□□□□□ -0.46
PDLIM5-223ENST00000627587 C1orf141Q5JVX7 400 aa12.15□□□□□ -0.46
PDLIM5-223ENST00000627587 ATG3Q9NT62 314 aa12.15□□□□□ -0.46
PDLIM5-223ENST00000627587 COG6Q9Y2V7 657 aa12.15□□□□□ -0.46
PDLIM5-223ENST00000627587 RTCBQ9Y3I0 505 aaKnown RBP12.15□□□□□ -0.46
PDLIM5-223ENST00000627587 ADCY9O60503 1353 aa12.15□□□□□ -0.46
PDLIM5-223ENST00000627587 ABCB7O75027 752 aa12.14□□□□□ -0.47
PDLIM5-223ENST00000627587 ZKSCAN2Q63HK3 967 aa12.14□□□□□ -0.47
PDLIM5-223ENST00000627587 ATF7IPQ6VMQ6 1270 aa12.14□□□□□ -0.47
PDLIM5-223ENST00000627587 CLUAP1Q96AJ1 413 aa12.14□□□□□ -0.47
PDLIM5-223ENST00000627587 DCAF5Q96JK2 942 aa12.14□□□□□ -0.47
PDLIM5-223ENST00000627587 KCNQ3O43525 872 aa12.14□□□□□ -0.47
PDLIM5-223ENST00000627587 ITPK1Q13572 414 aa12.14□□□□□ -0.47
PDLIM5-223ENST00000627587 AMIGO3Q86WK7 504 aa12.14□□□□□ -0.47
PDLIM5-223ENST00000627587 CCDC136Q96JN2 1154 aa12.14□□□□□ -0.47
PDLIM5-223ENST00000627587 KIF16BQ96L93 1317 aa12.14□□□□□ -0.47
PDLIM5-223ENST00000627587 HSPA6P17066 643 aa12.13□□□□□ -0.47
PDLIM5-223ENST00000627587 HEG1Q9ULI3 1381 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms