RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 ATP4AP20648 1035 aa7.15□□□□□ -1.26
SCN1A-208ENST00000625916 DCDC2BA2VCK2 349 aa7.14□□□□□ -1.27
SCN1A-208ENST00000625916 NEURL1BA8MQ27 555 aa7.14□□□□□ -1.27
SCN1A-208ENST00000625916 ARAFP10398 606 aa7.14□□□□□ -1.27
SCN1A-208ENST00000625916 TATP17735 454 aaPredicted RBP7.14□□□□□ -1.27
SCN1A-208ENST00000625916 COL8A1P27658 744 aa7.14□□□□□ -1.27
SCN1A-208ENST00000625916 SOX11P35716 441 aa7.14□□□□□ -1.27
SCN1A-208ENST00000625916 BTBD6Q96KE9 485 aa7.14□□□□□ -1.27
SCN1A-208ENST00000625916 DNAAF2Q9NVR5 837 aaKnown RBP7.14□□□□□ -1.27
SCN1A-208ENST00000625916 GJA3Q9Y6H8 435 aa7.14□□□□□ -1.27
SCN1A-208ENST00000625916 A0A1W2PNR3 127 aa7.13□□□□□ -1.27
SCN1A-208ENST00000625916 KHNYNO15037 678 aaKnown RBP7.13□□□□□ -1.27
SCN1A-208ENST00000625916 EPXP11678 715 aa7.13□□□□□ -1.27
SCN1A-208ENST00000625916 SUV39H2Q9H5I1 410 aa7.13□□□□□ -1.27
SCN1A-208ENST00000625916 CABP1Q9NZU7 370 aa7.13□□□□□ -1.27
SCN1A-208ENST00000625916 A6NJY4 79 aa7.12□□□□□ -1.27
SCN1A-208ENST00000625916 TMEM229AB2RXF0 380 aa7.12□□□□□ -1.27
SCN1A-208ENST00000625916 CDK2AP1O14519 115 aa7.12□□□□□ -1.27
SCN1A-208ENST00000625916 GNB5O14775 395 aa7.12□□□□□ -1.27
SCN1A-208ENST00000625916 MAPTP10636 758 aaKnown RBP7.12□□□□□ -1.27
SCN1A-208ENST00000625916 LINC00114Q6XXX2 140 aa7.12□□□□□ -1.27
SCN1A-208ENST00000625916 SLC4A9Q96Q91 983 aa7.12□□□□□ -1.27
SCN1A-208ENST00000625916 K7ELQ4 463 aaPredicted RBP7.11□□□□□ -1.27
SCN1A-208ENST00000625916 CD33P20138 364 aa7.11□□□□□ -1.27
SCN1A-208ENST00000625916 ADH6P28332 368 aa7.11□□□□□ -1.27
SCN1A-208ENST00000625916 BAG6P46379 1132 aa7.11□□□□□ -1.27
SCN1A-208ENST00000625916 TNP2Q05952 138 aa7.11□□□□□ -1.27
SCN1A-208ENST00000625916 MCM6Q14566 821 aa7.11□□□□□ -1.27
SCN1A-208ENST00000625916 EML3Q32P44 896 aa7.11□□□□□ -1.27
SCN1A-208ENST00000625916 BICDL1Q6ZP65 573 aa7.11□□□□□ -1.27
SCN1A-208ENST00000625916 ZDHHC3Q9NYG2 299 aa7.11□□□□□ -1.27
SCN1A-208ENST00000625916 PIK3CDO00329 1044 aa7.1□□□□□ -1.27
SCN1A-208ENST00000625916 BACH1O14867 736 aa7.1□□□□□ -1.27
SCN1A-208ENST00000625916 SKIP12755 728 aa7.1□□□□□ -1.27
SCN1A-208ENST00000625916 HOXB4P17483 251 aaPredicted RBP7.1□□□□□ -1.27
SCN1A-208ENST00000625916 PSME1Q06323 249 aa7.1□□□□□ -1.27
SCN1A-208ENST00000625916 MTFR1Q15390 333 aa7.1□□□□□ -1.27
SCN1A-208ENST00000625916 CHSY3Q70JA7 882 aa7.1□□□□□ -1.27
SCN1A-208ENST00000625916 NOP53Q9NZM5 478 aaKnown RBP7.1□□□□□ -1.27
SCN1A-208ENST00000625916 PRR12Q9ULL5 1215 aa7.1□□□□□ -1.27
SCN1A-208ENST00000625916 IQSEC3Q9UPP2 1182 aaPredicted RBP7.1□□□□□ -1.27
SCN1A-208ENST00000625916 PARP3Q9Y6F1 533 aa7.1□□□□□ -1.27
SCN1A-208ENST00000625916 USP3Q9Y6I4 520 aa7.1□□□□□ -1.27
SCN1A-208ENST00000625916 DGKGP49619 791 aa7.09□□□□□ -1.27
SCN1A-208ENST00000625916 FAM182BQ5T319 152 aa7.09□□□□□ -1.27
SCN1A-208ENST00000625916 ZNF295-AS1Q8N0V1 137 aa7.09□□□□□ -1.27
SCN1A-208ENST00000625916 ZIC5Q96T25 663 aa7.09□□□□□ -1.27
SCN1A-208ENST00000625916 NOD1Q9Y239 953 aa7.09□□□□□ -1.27
SCN1A-208ENST00000625916 PCDHGA11Q9Y5H2 935 aa7.09□□□□□ -1.27
SCN1A-208ENST00000625916 FAM157BP0CG42 384 aa7.08□□□□□ -1.28
SCN1A-208ENST00000625916 GTF2IP78347 998 aa7.08□□□□□ -1.28
SCN1A-208ENST00000625916 WWC1Q8IX03 1113 aa7.08□□□□□ -1.28
SCN1A-208ENST00000625916 AVENQ9NQS1 362 aaPredicted RBP7.08□□□□□ -1.28
SCN1A-208ENST00000625916 FURINP09958 794 aa7.07□□□□□ -1.28
SCN1A-208ENST00000625916 PCBP4P57723 403 aaKnown RBP7.07□□□□□ -1.28
SCN1A-208ENST00000625916 FCHSD1Q86WN1 690 aa7.07□□□□□ -1.28
SCN1A-208ENST00000625916 MARK1Q9P0L2 795 aa7.07□□□□□ -1.28
SCN1A-208ENST00000625916 KLF15Q9UIH9 416 aa7.07□□□□□ -1.28
SCN1A-208ENST00000625916 HCN2Q9UL51 889 aa7.07□□□□□ -1.28
SCN1A-208ENST00000625916 COG6Q9Y2V7 657 aa7.07□□□□□ -1.28
SCN1A-208ENST00000625916 C1QTNF9BB2RNN3 333 aa7.06□□□□□ -1.28
SCN1A-208ENST00000625916 LZTS3O60299 673 aaPredicted RBP7.06□□□□□ -1.28
SCN1A-208ENST00000625916 TXLNAP40222 546 aa7.06□□□□□ -1.28
SCN1A-208ENST00000625916 NCOA4Q13772 614 aa7.06□□□□□ -1.28
SCN1A-208ENST00000625916 ZNF468Q5VIY5 522 aaPredicted RBP7.06□□□□□ -1.28
SCN1A-208ENST00000625916 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.06□□□□□ -1.28
SCN1A-208ENST00000625916 NEUROD4Q9HD90 331 aa7.06□□□□□ -1.28
SCN1A-208ENST00000625916 ZNF358Q9NW07 568 aa7.06□□□□□ -1.28
SCN1A-208ENST00000625916 SCHIP1Q9P0W5 487 aaPredicted RBP7.06□□□□□ -1.28
SCN1A-208ENST00000625916 SAMD5Q5TGI4 173 aa7.05□□□□□ -1.28
SCN1A-208ENST00000625916 CD163Q86VB7 1156 aa7.05□□□□□ -1.28
SCN1A-208ENST00000625916 L3MBTL2Q969R5 705 aa7.05□□□□□ -1.28
SCN1A-208ENST00000625916 ZNF232Q9UNY5 417 aa7.05□□□□□ -1.28
SCN1A-208ENST00000625916 LAMC2Q13753 1193 aa7.04□□□□□ -1.28
SCN1A-208ENST00000625916 XP32Q5T750 250 aa7.04□□□□□ -1.28
SCN1A-208ENST00000625916 LRRC69Q6ZNQ3 347 aa7.04□□□□□ -1.28
SCN1A-208ENST00000625916 DEPDC4Q8N2C3 294 aa7.04□□□□□ -1.28
SCN1A-208ENST00000625916 NFATC2IPQ8NCF5 419 aa7.04□□□□□ -1.28
SCN1A-208ENST00000625916 ZDHHC1Q8WTX9 485 aa7.04□□□□□ -1.28
SCN1A-208ENST00000625916 ALG2Q9H553 416 aa7.04□□□□□ -1.28
SCN1A-208ENST00000625916 STRN4Q9NRL3 753 aa7.04□□□□□ -1.28
SCN1A-208ENST00000625916 EFSO43281 561 aa7.03□□□□□ -1.28
SCN1A-208ENST00000625916 ALAS2P22557 587 aa7.03□□□□□ -1.28
SCN1A-208ENST00000625916 NOS2P35228 1153 aa7.03□□□□□ -1.28
SCN1A-208ENST00000625916 CHRNA4P43681 627 aa7.03□□□□□ -1.28
SCN1A-208ENST00000625916 TEAD4Q15561 434 aa7.03□□□□□ -1.28
SCN1A-208ENST00000625916 TBCELQ5QJ74 424 aa7.03□□□□□ -1.28
SCN1A-208ENST00000625916 SLC9A9Q8IVB4 645 aa7.03□□□□□ -1.28
SCN1A-208ENST00000625916 USP17L5A8MUK1 530 aa7.02□□□□□ -1.29
SCN1A-208ENST00000625916 RAD21O60216 631 aa7.02□□□□□ -1.29
SCN1A-208ENST00000625916 SYT9Q86SS6 491 aa7.02□□□□□ -1.29
SCN1A-208ENST00000625916 TNS4Q8IZW8 715 aa7.02□□□□□ -1.29
SCN1A-208ENST00000625916 PLVAPQ9BX97 442 aa7.02□□□□□ -1.29
SCN1A-208ENST00000625916 ELOA3CA0A087WX78 387 aaPredicted RBP7.01□□□□□ -1.29
SCN1A-208ENST00000625916 SERTM1A2A2V5 107 aa7.01□□□□□ -1.29
SCN1A-208ENST00000625916 ELOA3DA6NLF2 546 aaPredicted RBP7.01□□□□□ -1.29
SCN1A-208ENST00000625916 ELOA3BQ3SY89 546 aa7.01□□□□□ -1.29
SCN1A-208ENST00000625916 TRIM50Q86XT4 487 aa7.01□□□□□ -1.29
SCN1A-208ENST00000625916 ELOA3Q8NG57 546 aa7.01□□□□□ -1.29
SCN1A-208ENST00000625916 TRIM11Q96F44 468 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms