RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 HOXB7P09629 217 aa13.07□□□□□ -0.32
CUX1-221ENST00000622516 CHMP5Q9NZZ3 219 aa13.07□□□□□ -0.32
CUX1-221ENST00000622516 PHKG2P15735 406 aa13.06□□□□□ -0.32
CUX1-221ENST00000622516 CASC1Q6TDU7 716 aa13.06□□□□□ -0.32
CUX1-221ENST00000622516 SSH3Q8TE77 659 aa13.06□□□□□ -0.32
CUX1-221ENST00000622516 JARID2Q92833 1246 aaPredicted RBP13.06□□□□□ -0.32
CUX1-221ENST00000622516 SNX21Q969T3 373 aa13.06□□□□□ -0.32
CUX1-221ENST00000622516 CYP27B1O15528 508 aa13.06□□□□□ -0.32
CUX1-221ENST00000622516 GZF1Q9H116 711 aaPredicted RBP13.06□□□□□ -0.32
CUX1-221ENST00000622516 PA2G4Q9UQ80 394 aaKnown RBP13.06□□□□□ -0.32
CUX1-221ENST00000622516 MEGF6O75095 1541 aa13.06□□□□□ -0.32
CUX1-221ENST00000622516 BRINP3Q76B58 766 aa13.05□□□□□ -0.32
CUX1-221ENST00000622516 ZNF496Q96IT1 587 aaPredicted RBP13.05□□□□□ -0.32
CUX1-221ENST00000622516 OSBPL3Q9H4L5 887 aa13.05□□□□□ -0.32
CUX1-221ENST00000622516 SLC52A2Q9HAB3 445 aa13.05□□□□□ -0.32
CUX1-221ENST00000622516 SALL3Q9BXA9 1300 aa13.05□□□□□ -0.32
CUX1-221ENST00000622516 LMO7Q8WWI1 1683 aa13.05□□□□□ -0.32
CUX1-221ENST00000622516 PHRF1Q9P1Y6 1649 aaKnown RBP13.05□□□□□ -0.32
CUX1-221ENST00000622516 USP16Q9Y5T5 823 aa13.05□□□□□ -0.32
CUX1-221ENST00000622516 KDM3BQ7LBC6 1761 aa13.05□□□□□ -0.32
CUX1-221ENST00000622516 K7ELQ4 463 aaPredicted RBP13.05□□□□□ -0.32
CUX1-221ENST00000622516 OS9Q13438 667 aaPredicted RBP13.05□□□□□ -0.32
CUX1-221ENST00000622516 PDIA6Q15084 440 aa13.05□□□□□ -0.32
CUX1-221ENST00000622516 KSR2Q6VAB6 950 aa13.05□□□□□ -0.32
CUX1-221ENST00000622516 ZNF335Q9H4Z2 1342 aaPredicted RBP13.04□□□□□ -0.32
CUX1-221ENST00000622516 ERC2O15083 957 aa13.04□□□□□ -0.32
CUX1-221ENST00000622516 RHPN1Q8TCX5 695 aa13.04□□□□□ -0.32
CUX1-221ENST00000622516 SPG7Q9UQ90 795 aa13.04□□□□□ -0.32
CUX1-221ENST00000622516 SPATA31A3Q5VYP0 1347 aa13.04□□□□□ -0.32
CUX1-221ENST00000622516 KDM6AO15550 1401 aaPredicted RBP13.04□□□□□ -0.32
CUX1-221ENST00000622516 NCAPD2Q15021 1401 aa13.04□□□□□ -0.32
CUX1-221ENST00000622516 MCM4P33991 863 aa13.03□□□□□ -0.32
CUX1-221ENST00000622516 POLA2Q14181 598 aa13.03□□□□□ -0.32
CUX1-221ENST00000622516 RIC3Q7Z5B4 369 aa13.03□□□□□ -0.32
CUX1-221ENST00000622516 IFNL2Q8IZJ0 200 aa13.03□□□□□ -0.32
CUX1-221ENST00000622516 IL25Q9H293 177 aa13.03□□□□□ -0.32
CUX1-221ENST00000622516 PRDM11Q9NQV5 511 aa13.03□□□□□ -0.32
CUX1-221ENST00000622516 ALS2Q96Q42 1657 aa13.03□□□□□ -0.32
CUX1-221ENST00000622516 COPS6Q7L5N1 327 aa13.02□□□□□ -0.32
CUX1-221ENST00000622516 ANO2Q9NQ90 1003 aa13.02□□□□□ -0.32
CUX1-221ENST00000622516 KIF1AQ12756 1690 aa13.02□□□□□ -0.32
CUX1-221ENST00000622516 TOM1L2Q6ZVM7 507 aa13.02□□□□□ -0.33
CUX1-221ENST00000622516 KLHDC4Q8TBB5 520 aa13.02□□□□□ -0.33
CUX1-221ENST00000622516 XAGE3Q8WTP9 111 aa13.02□□□□□ -0.33
CUX1-221ENST00000622516 DDX21Q9NR30 783 aaKnown RBP eCLIP13.02□□□□□ -0.331e-7■□□□□ 10.9
CUX1-221ENST00000622516 STRN4Q9NRL3 753 aa13.02□□□□□ -0.33
CUX1-221ENST00000622516 HYPKQ9NX55 129 aa13.02□□□□□ -0.33
CUX1-221ENST00000622516 HEG1Q9ULI3 1381 aa13.02□□□□□ -0.33
CUX1-221ENST00000622516 REC8O95072 547 aa13.02□□□□□ -0.33
CUX1-221ENST00000622516 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.02□□□□□ -0.33
CUX1-221ENST00000622516 TNS3Q68CZ2 1445 aa13.01□□□□□ -0.33
CUX1-221ENST00000622516 PXDNLA1KZ92 1463 aa13.01□□□□□ -0.33
CUX1-221ENST00000622516 CHMLP26374 656 aa13.01□□□□□ -0.33
CUX1-221ENST00000622516 DDIT3P35638 169 aa13.01□□□□□ -0.33
CUX1-221ENST00000622516 NOL8Q76FK4 1167 aaKnown RBP13.01□□□□□ -0.33
CUX1-221ENST00000622516 TTC5Q8N0Z6 440 aa13.01□□□□□ -0.33
CUX1-221ENST00000622516 TNPO1Q92973 898 aaKnown RBP13.01□□□□□ -0.33
CUX1-221ENST00000622516 SLAIN2Q9P270 581 aa13.01□□□□□ -0.33
CUX1-221ENST00000622516 SUCLG2Q96I99 432 aa13.01□□□□□ -0.33
CUX1-221ENST00000622516 ESYT1Q9BSJ8 1104 aa13.01□□□□□ -0.33
CUX1-221ENST00000622516 SIL1Q9H173 461 aa13.01□□□□□ -0.33
CUX1-221ENST00000622516 PALD1Q9ULE6 856 aa13.01□□□□□ -0.33
CUX1-221ENST00000622516 AK9Q5TCS8 1911 aa13.01□□□□□ -0.33
CUX1-221ENST00000622516 IGKV5-2P06315 115 aa13□□□□□ -0.33
CUX1-221ENST00000622516 CABP4P57796 275 aa13□□□□□ -0.33
CUX1-221ENST00000622516 RABEP1Q15276 862 aa13□□□□□ -0.33
CUX1-221ENST00000622516 DDX54Q8TDD1 881 aaKnown RBP13□□□□□ -0.33
CUX1-221ENST00000622516 KAZALD1Q96I82 304 aa13□□□□□ -0.33
CUX1-221ENST00000622516 KIF1BPQ96EK5 621 aa13□□□□□ -0.33
CUX1-221ENST00000622516 MYD88Q99836 296 aa13□□□□□ -0.33
CUX1-221ENST00000622516 CHMP4AQ9BY43 222 aa13□□□□□ -0.33
CUX1-221ENST00000622516 BICC1Q9H694 974 aaKnown RBP13□□□□□ -0.33
CUX1-221ENST00000622516 BRPF3Q9ULD4 1205 aa13□□□□□ -0.33
CUX1-221ENST00000622516 STAP2Q9UGK3 403 aa12.99□□□□□ -0.33
CUX1-221ENST00000622516 NCOA3Q9Y6Q9 1424 aa12.99□□□□□ -0.33
CUX1-221ENST00000622516 KDM4FA0A1W2PPD8 638 aa12.99□□□□□ -0.33
CUX1-221ENST00000622516 ATP5J2-PTCD1G3V325 749 aa12.99□□□□□ -0.33
CUX1-221ENST00000622516 GRM8O00222 908 aa12.99□□□□□ -0.33
CUX1-221ENST00000622516 PTCD1O75127 700 aaKnown RBP12.99□□□□□ -0.33
CUX1-221ENST00000622516 IL27Q8NEV9 243 aa12.99□□□□□ -0.33
CUX1-221ENST00000622516 DCAF5Q96JK2 942 aa12.99□□□□□ -0.33
CUX1-221ENST00000622516 RAB11FIP3O75154 756 aa12.99□□□□□ -0.33
CUX1-221ENST00000622516 DDX58O95786 925 aaKnown RBP12.99□□□□□ -0.33
CUX1-221ENST00000622516 SSFA2P28290 1259 aa12.99□□□□□ -0.33
CUX1-221ENST00000622516 LINS1Q8NG48 757 aa12.99□□□□□ -0.33
CUX1-221ENST00000622516 PI4K2BQ8TCG2 481 aa12.99□□□□□ -0.33
CUX1-221ENST00000622516 NEK4P51957 841 aa12.98□□□□□ -0.33
CUX1-221ENST00000622516 PKP1Q13835 747 aa12.98□□□□□ -0.33
CUX1-221ENST00000622516 ZGPATQ8N5A5 531 aaKnown RBP12.98□□□□□ -0.33
CUX1-221ENST00000622516 KCNA4P22459 653 aa12.98□□□□□ -0.33
CUX1-221ENST00000622516 ALDH1L1O75891 902 aa12.97□□□□□ -0.33
CUX1-221ENST00000622516 EPHA10Q5JZY3 1008 aa12.97□□□□□ -0.33
CUX1-221ENST00000622516 TRAK2O60296 914 aa12.97□□□□□ -0.33
CUX1-221ENST00000622516 SNRPA1P09661 255 aaKnown RBP12.97□□□□□ -0.33
CUX1-221ENST00000622516 DCCP43146 1447 aa12.97□□□□□ -0.33
CUX1-221ENST00000622516 UPF3BQ9BZI7 483 aaKnown RBP12.97□□□□□ -0.33
CUX1-221ENST00000622516 COL18A1P39060 1754 aa12.97□□□□□ -0.33
CUX1-221ENST00000622516 CWC27Q6UX04 472 aaKnown RBP12.96□□□□□ -0.33
CUX1-221ENST00000622516 ANKRD13DQ6ZTN6 518 aa12.96□□□□□ -0.33
CUX1-221ENST00000622516 CCDC8Q9H0W5 538 aaPredicted RBP12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms