RNA–Protein interactions for RNA: ENST00000622226.1

PDLIM2-220, Transcript of PDZ and LIM domain 2, humanhuman

Gene PDLIM2, Length 6,559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-220ENST00000622226 SRGAP3O43295 1099 aa17.67■□□□□ 0.42
PDLIM2-220ENST00000622226 SPTY2D1Q68D10 685 aaPredicted RBP17.67■□□□□ 0.42
PDLIM2-220ENST00000622226 PRPF40BQ6NWY9 871 aaKnown RBP17.67■□□□□ 0.42
PDLIM2-220ENST00000622226 NAA15Q9BXJ9 866 aaKnown RBP17.67■□□□□ 0.42
PDLIM2-220ENST00000622226 CEP131Q9UPN4 1083 aa17.67■□□□□ 0.42
PDLIM2-220ENST00000622226 COMMD10Q9Y6G5 202 aa17.67■□□□□ 0.42
PDLIM2-220ENST00000622226 SMARCA5O60264 1052 aaPredicted RBP17.67■□□□□ 0.42
PDLIM2-220ENST00000622226 ATF7IPQ6VMQ6 1270 aa17.67■□□□□ 0.42
PDLIM2-220ENST00000622226 TFIP11Q9UBB9 837 aaKnown RBP17.67■□□□□ 0.42
PDLIM2-220ENST00000622226 RAD54L2Q9Y4B4 1467 aa17.67■□□□□ 0.42
PDLIM2-220ENST00000622226 PPP1R12BO60237 982 aaPredicted RBP17.66■□□□□ 0.42
PDLIM2-220ENST00000622226 ZNF644Q9H582 1327 aaPredicted RBP17.66■□□□□ 0.42
PDLIM2-220ENST00000622226 CCDC85AQ96PX6 553 aaPredicted RBP17.66■□□□□ 0.42
PDLIM2-220ENST00000622226 PPM1FP49593 454 aaPredicted RBP17.66■□□□□ 0.42
PDLIM2-220ENST00000622226 VPS36Q86VN1 386 aa17.66■□□□□ 0.42
PDLIM2-220ENST00000622226 CFAP57Q96MR6 1250 aa17.66■□□□□ 0.42
PDLIM2-220ENST00000622226 MPHOSPH10O00566 681 aaKnown RBP17.66■□□□□ 0.42
PDLIM2-220ENST00000622226 GNL3LQ9NVN8 582 aaKnown RBP17.66■□□□□ 0.42
PDLIM2-220ENST00000622226 TTC31Q49AM3 519 aaPredicted RBP17.66■□□□□ 0.42
PDLIM2-220ENST00000622226 MYO1BO43795 1136 aa17.65■□□□□ 0.42
PDLIM2-220ENST00000622226 TAOK3Q9H2K8 898 aa17.65■□□□□ 0.42
PDLIM2-220ENST00000622226 A0A1W2PRG0 241 aa17.65■□□□□ 0.42
PDLIM2-220ENST00000622226 ZSCAN29Q8IWY8 852 aaPredicted RBP17.65■□□□□ 0.42
PDLIM2-220ENST00000622226 TSG101Q99816 390 aa17.65■□□□□ 0.42
PDLIM2-220ENST00000622226 EXOC6BQ9Y2D4 811 aa17.65■□□□□ 0.42
PDLIM2-220ENST00000622226 CNNM3Q8NE01 707 aa17.65■□□□□ 0.42
PDLIM2-220ENST00000622226 PPP1R14CQ8TAE6 165 aa17.65■□□□□ 0.42
PDLIM2-220ENST00000622226 ALS2CR12Q96Q35 445 aa17.65■□□□□ 0.42
PDLIM2-220ENST00000622226 NAP1L3Q99457 506 aaPredicted RBP17.65■□□□□ 0.42
PDLIM2-220ENST00000622226 CAPN2P17655 700 aa17.64■□□□□ 0.42
PDLIM2-220ENST00000622226 PANK2Q9BZ23 570 aa17.64■□□□□ 0.42
PDLIM2-220ENST00000622226 CABP4P57796 275 aa17.64■□□□□ 0.41
PDLIM2-220ENST00000622226 CCT4P50991 539 aaKnown RBP17.64■□□□□ 0.41
PDLIM2-220ENST00000622226 FSIP1Q8NA03 581 aa17.64■□□□□ 0.41
PDLIM2-220ENST00000622226 PPFIA3O75145 1194 aa17.63■□□□□ 0.41
PDLIM2-220ENST00000622226 PRDM11Q9NQV5 511 aa17.63■□□□□ 0.41
PDLIM2-220ENST00000622226 ANKRD18BA2A2Z9 1011 aa17.63■□□□□ 0.41
PDLIM2-220ENST00000622226 TBC1D2Q9BYX2 928 aa17.63■□□□□ 0.41
PDLIM2-220ENST00000622226 CEP83Q9Y592 693 aa17.63■□□□□ 0.41
PDLIM2-220ENST00000622226 DNAJC21Q5F1R6 531 aaKnown RBP17.63■□□□□ 0.41
PDLIM2-220ENST00000622226 SRCIN1Q9C0H9 1055 aa17.63■□□□□ 0.41
PDLIM2-220ENST00000622226 IDH1O75874 414 aaKnown RBP17.63■□□□□ 0.41
PDLIM2-220ENST00000622226 WASF1Q92558 559 aa17.63■□□□□ 0.41
PDLIM2-220ENST00000622226 SCAND2PQ9GZW5 306 aaPredicted RBP17.63■□□□□ 0.41
PDLIM2-220ENST00000622226 MTIF2P46199 727 aaKnown RBP17.63■□□□□ 0.41
PDLIM2-220ENST00000622226 KRT32Q14532 448 aa17.63■□□□□ 0.41
PDLIM2-220ENST00000622226 IVLP07476 585 aa17.62■□□□□ 0.41
PDLIM2-220ENST00000622226 GSDMDP57764 484 aa17.62■□□□□ 0.41
PDLIM2-220ENST00000622226 HSP90AA4PQ58FG1 418 aa17.62■□□□□ 0.41
PDLIM2-220ENST00000622226 PRIMPOLQ96LW4 560 aa17.62■□□□□ 0.41
PDLIM2-220ENST00000622226 TERF1P54274 439 aa17.62■□□□□ 0.41
PDLIM2-220ENST00000622226 SEPT6Q14141 434 aa17.62■□□□□ 0.41
PDLIM2-220ENST00000622226 NAA25Q14CX7 972 aa17.62■□□□□ 0.41
PDLIM2-220ENST00000622226 ARFGAP3Q9NP61 516 aa17.62■□□□□ 0.41
PDLIM2-220ENST00000622226 PAXBP1Q9Y5B6 917 aa17.62■□□□□ 0.41
PDLIM2-220ENST00000622226 PHACTR2O75167 634 aa17.61■□□□□ 0.41
PDLIM2-220ENST00000622226 ANKLE2Q86XL3 938 aa17.61■□□□□ 0.41
PDLIM2-220ENST00000622226 C8orf76Q96K31 380 aa17.61■□□□□ 0.41
PDLIM2-220ENST00000622226 CTNNA3Q9UI47 895 aa17.61■□□□□ 0.41
PDLIM2-220ENST00000622226 HCLS1P14317 486 aaPredicted RBP17.61■□□□□ 0.41
PDLIM2-220ENST00000622226 CEBPAP49715 358 aaPredicted RBP17.61■□□□□ 0.41
PDLIM2-220ENST00000622226 NEMFO60524 1076 aa17.61■□□□□ 0.41
PDLIM2-220ENST00000622226 TRMT1LQ7Z2T5 733 aaKnown RBP17.61■□□□□ 0.41
PDLIM2-220ENST00000622226 DNAI1Q9UI46 699 aa17.61■□□□□ 0.41
PDLIM2-220ENST00000622226 VGLL3A8MV65 326 aa17.6■□□□□ 0.41
PDLIM2-220ENST00000622226 FERP16591 822 aa17.6■□□□□ 0.41
PDLIM2-220ENST00000622226 GAS2L2Q8NHY3 880 aa17.6■□□□□ 0.41
PDLIM2-220ENST00000622226 VPS18Q9P253 973 aa17.6■□□□□ 0.41
PDLIM2-220ENST00000622226 ZNF165P49910 485 aa17.6■□□□□ 0.41
PDLIM2-220ENST00000622226 CCT2P78371 535 aaKnown RBP17.6■□□□□ 0.41
PDLIM2-220ENST00000622226 GIMAP6Q6P9H5 292 aa17.6■□□□□ 0.41
PDLIM2-220ENST00000622226 FAM160A1Q05DH4 1040 aa17.6■□□□□ 0.41
PDLIM2-220ENST00000622226 ZSCAN25Q6NSZ9 544 aa17.6■□□□□ 0.41
PDLIM2-220ENST00000622226 ARHGAP5Q13017 1502 aa17.59■□□□□ 0.41
PDLIM2-220ENST00000622226 GRIPAP1Q4V328 841 aa17.59■□□□□ 0.41
PDLIM2-220ENST00000622226 TCERG1LQ5VWI1 586 aa17.59■□□□□ 0.41
PDLIM2-220ENST00000622226 TMEM57Q8N5G2 664 aa17.59■□□□□ 0.41
PDLIM2-220ENST00000622226 MPHOSPH8Q99549 860 aa17.59■□□□□ 0.41
PDLIM2-220ENST00000622226 ZEB2O60315 1214 aa17.59■□□□□ 0.41
PDLIM2-220ENST00000622226 NOLC1Q14978 699 aaKnown RBP eCLIP17.59■□□□□ 0.41
PDLIM2-220ENST00000622226 OTUD6BQ8N6M0 293 aa17.59■□□□□ 0.41
PDLIM2-220ENST00000622226 RAPGEF2Q9Y4G8 1499 aa17.59■□□□□ 0.41
PDLIM2-220ENST00000622226 ARID4AP29374 1257 aaPredicted RBP17.59■□□□□ 0.41
PDLIM2-220ENST00000622226 STX1AQ16623 288 aa17.59■□□□□ 0.41
PDLIM2-220ENST00000622226 LRP2BPQ9P2M1 347 aa17.59■□□□□ 0.41
PDLIM2-220ENST00000622226 ZSCAN23Q3MJ62 389 aa17.58■□□□□ 0.41
PDLIM2-220ENST00000622226 CCDC121Q6ZUS5 278 aa17.58■□□□□ 0.41
PDLIM2-220ENST00000622226 UBAP1LF5GYI3 381 aa17.58■□□□□ 0.4
PDLIM2-220ENST00000622226 CCDC184Q52MB2 194 aa17.58■□□□□ 0.4
PDLIM2-220ENST00000622226 MINDY4BA8MYZ0 360 aa17.58■□□□□ 0.4
PDLIM2-220ENST00000622226 SELENOSQ9BQE4 189 aa17.58■□□□□ 0.4
PDLIM2-220ENST00000622226 TMCO4Q5TGY1 634 aa17.58■□□□□ 0.4
PDLIM2-220ENST00000622226 SMIM23A6NLE4 172 aa17.57■□□□□ 0.4
PDLIM2-220ENST00000622226 KIF4AO95239 1232 aa17.57■□□□□ 0.4
PDLIM2-220ENST00000622226 WDR78Q5VTH9 848 aa17.57■□□□□ 0.4
PDLIM2-220ENST00000622226 TATP17735 454 aaPredicted RBP17.57■□□□□ 0.4
PDLIM2-220ENST00000622226 MCM5P33992 734 aa17.57■□□□□ 0.4
PDLIM2-220ENST00000622226 GBP6Q6ZN66 633 aa17.57■□□□□ 0.4
PDLIM2-220ENST00000622226 CCDC155Q8N6L0 562 aa17.57■□□□□ 0.4
PDLIM2-220ENST00000622226 IKBKGQ9Y6K9 419 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms