RNA–Protein interactions for RNA: ENST00000620393.4

CPNE3-209, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 680 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-209ENST00000620393 RNF123Q5XPI4 1314 aa10.31□□□□□ -0.76
CPNE3-209ENST00000620393 PTCD1O75127 700 aaKnown RBP10.3□□□□□ -0.76
CPNE3-209ENST00000620393 CCDC30Q5VVM6 783 aa10.3□□□□□ -0.76
CPNE3-209ENST00000620393 VSIG10Q8N0Z9 540 aa10.3□□□□□ -0.76
CPNE3-209ENST00000620393 MRPL50Q8N5N7 158 aaKnown RBP10.3□□□□□ -0.76
CPNE3-209ENST00000620393 SMARCC1Q92922 1105 aaPredicted RBP10.3□□□□□ -0.76
CPNE3-209ENST00000620393 BCL11BQ9C0K0 894 aaPredicted RBP10.3□□□□□ -0.76
CPNE3-209ENST00000620393 THSD7AQ9UPZ6 1657 aa10.3□□□□□ -0.76
CPNE3-209ENST00000620393 PRAMEF22A3QJZ6 481 aa10.29□□□□□ -0.76
CPNE3-209ENST00000620393 TCERG1O14776 1098 aaKnown RBP10.29□□□□□ -0.76
CPNE3-209ENST00000620393 EIF2S2P20042 333 aaKnown RBP10.29□□□□□ -0.76
CPNE3-209ENST00000620393 PTF1AQ7RTS3 328 aa10.29□□□□□ -0.76
CPNE3-209ENST00000620393 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.29□□□□□ -0.76
CPNE3-209ENST00000620393 TEX13AQ9BXU3 409 aaPredicted RBP10.29□□□□□ -0.76
CPNE3-209ENST00000620393 SMC4Q9NTJ3 1288 aa10.29□□□□□ -0.76
CPNE3-209ENST00000620393 USP16Q9Y5T5 823 aa10.29□□□□□ -0.76
CPNE3-209ENST00000620393 RRP1P56182 461 aaKnown RBP10.28□□□□□ -0.76
CPNE3-209ENST00000620393 HDGFL1Q5TGJ6 251 aa10.28□□□□□ -0.76
CPNE3-209ENST00000620393 BCL2L13Q9BXK5 485 aa10.28□□□□□ -0.76
CPNE3-209ENST00000620393 LRRC37A3O60309 1634 aa10.28□□□□□ -0.76
CPNE3-209ENST00000620393 SHANK3Q9BYB0 1731 aa10.27□□□□□ -0.76
CPNE3-209ENST00000620393 IPO8O15397 1037 aaKnown RBP10.27□□□□□ -0.77
CPNE3-209ENST00000620393 PLIN1O60240 522 aa10.27□□□□□ -0.77
CPNE3-209ENST00000620393 CD44P16070 742 aaKnown RBP10.27□□□□□ -0.77
CPNE3-209ENST00000620393 ARHGAP45Q92619 1136 aa10.27□□□□□ -0.77
CPNE3-209ENST00000620393 NECTIN2Q92692 538 aa10.27□□□□□ -0.77
CPNE3-209ENST00000620393 SLC4A9Q96Q91 983 aa10.27□□□□□ -0.77
CPNE3-209ENST00000620393 STK31Q9BXU1 1019 aa10.27□□□□□ -0.77
CPNE3-209ENST00000620393 NOB1Q9ULX3 412 aaKnown RBP10.27□□□□□ -0.77
CPNE3-209ENST00000620393 SCN11AQ9UI33 1791 aa10.26□□□□□ -0.77
CPNE3-209ENST00000620393 LOC102724428A0A0B4J2F2 783 aa10.26□□□□□ -0.77
CPNE3-209ENST00000620393 TRIM37O94972 964 aa10.26□□□□□ -0.77
CPNE3-209ENST00000620393 STARD3NLO95772 234 aa10.26□□□□□ -0.77
CPNE3-209ENST00000620393 SIK1P57059 783 aa10.26□□□□□ -0.77
CPNE3-209ENST00000620393 DNAJC10Q8IXB1 793 aa10.26□□□□□ -0.77
CPNE3-209ENST00000620393 DBF4Q9UBU7 674 aaPredicted RBP10.26□□□□□ -0.77
CPNE3-209ENST00000620393 RGS12O14924 1447 aa10.25□□□□□ -0.77
CPNE3-209ENST00000620393 ATP6V1AP38606 617 aa10.25□□□□□ -0.77
CPNE3-209ENST00000620393 PDE3AQ14432 1141 aa10.25□□□□□ -0.77
CPNE3-209ENST00000620393 PDIA6Q15084 440 aa10.25□□□□□ -0.77
CPNE3-209ENST00000620393 ZKSCAN2Q63HK3 967 aa10.25□□□□□ -0.77
CPNE3-209ENST00000620393 FRAT1Q92837 279 aaPredicted RBP10.25□□□□□ -0.77
CPNE3-209ENST00000620393 DDX21Q9NR30 783 aaKnown RBP eCLIP10.25□□□□□ -0.77
CPNE3-209ENST00000620393 WNK3Q9BYP7 1800 aa10.25□□□□□ -0.77
CPNE3-209ENST00000620393 PALLDQ8WX93 1383 aa10.25□□□□□ -0.77
CPNE3-209ENST00000620393 A1BGP04217 495 aa10.24□□□□□ -0.77
CPNE3-209ENST00000620393 CYP19A1P11511 503 aaPredicted RBP10.24□□□□□ -0.77
CPNE3-209ENST00000620393 MS4A1P11836 297 aa10.24□□□□□ -0.77
CPNE3-209ENST00000620393 FKBP8Q14318 412 aa10.24□□□□□ -0.77
CPNE3-209ENST00000620393 ATF7IPQ6VMQ6 1270 aa10.24□□□□□ -0.77
CPNE3-209ENST00000620393 G2E3Q7L622 706 aa10.24□□□□□ -0.77
CPNE3-209ENST00000620393 HYPKQ9NX55 129 aa10.24□□□□□ -0.77
CPNE3-209ENST00000620393 CHPF2Q9P2E5 772 aa10.24□□□□□ -0.77
CPNE3-209ENST00000620393 ERBB4Q15303 1308 aa10.24□□□□□ -0.77
CPNE3-209ENST00000620393 KIF16BQ96L93 1317 aa10.24□□□□□ -0.77
CPNE3-209ENST00000620393 NBPF26B4DH59 902 aa10.23□□□□□ -0.77
CPNE3-209ENST00000620393 CANXP27824 592 aaKnown RBP10.23□□□□□ -0.77
CPNE3-209ENST00000620393 ITPK1Q13572 414 aa10.23□□□□□ -0.77
CPNE3-209ENST00000620393 PROSER3Q2NL68 480 aa10.23□□□□□ -0.77
CPNE3-209ENST00000620393 NBPF14Q5TI25 921 aa10.23□□□□□ -0.77
CPNE3-209ENST00000620393 NBPF10Q6P3W6 841 aaKnown RBP10.23□□□□□ -0.77
CPNE3-209ENST00000620393 NBPF15Q8N660 670 aa10.23□□□□□ -0.77
CPNE3-209ENST00000620393 API5Q9BZZ5 524 aaKnown RBP10.23□□□□□ -0.77
CPNE3-209ENST00000620393 PTPRCP08575 1304 aa10.23□□□□□ -0.77
CPNE3-209ENST00000620393 KCPQ6ZWJ8 1503 aa10.23□□□□□ -0.77
CPNE3-209ENST00000620393 PLSCR1O15162 318 aa10.22□□□□□ -0.77
CPNE3-209ENST00000620393 ANXA1P04083 346 aa10.22□□□□□ -0.77
CPNE3-209ENST00000620393 NEFLP07196 543 aa10.22□□□□□ -0.77
CPNE3-209ENST00000620393 TRIM27P14373 513 aa10.22□□□□□ -0.77
CPNE3-209ENST00000620393 FLIIQ13045 1269 aa10.22□□□□□ -0.77
CPNE3-209ENST00000620393 C20orf194Q5TEA3 1177 aa10.22□□□□□ -0.77
CPNE3-209ENST00000620393 LRP10Q7Z4F1 713 aa10.22□□□□□ -0.77
CPNE3-209ENST00000620393 DZIP1LQ8IYY4 767 aaKnown RBP10.22□□□□□ -0.77
CPNE3-209ENST00000620393 PHAXQ9H814 394 aaKnown RBP10.22□□□□□ -0.77
CPNE3-209ENST00000620393 TOGARAM1Q9Y4F4 1720 aa10.21□□□□□ -0.77
CPNE3-209ENST00000620393 SIPA1L3O60292 1781 aaPredicted RBP10.21□□□□□ -0.77
CPNE3-209ENST00000620393 KDM3BQ7LBC6 1761 aa10.21□□□□□ -0.77
CPNE3-209ENST00000620393 APBA3O96018 575 aa10.21□□□□□ -0.77
CPNE3-209ENST00000620393 MYL6BP14649 208 aa10.21□□□□□ -0.77
CPNE3-209ENST00000620393 HMGB2P26583 209 aaKnown RBP10.21□□□□□ -0.77
CPNE3-209ENST00000620393 INTS5Q6P9B9 1019 aaKnown RBP10.21□□□□□ -0.77
CPNE3-209ENST00000620393 COPS6Q7L5N1 327 aa10.21□□□□□ -0.77
CPNE3-209ENST00000620393 CCNL1Q9UK58 526 aaPredicted RBP10.21□□□□□ -0.77
CPNE3-209ENST00000620393 TNNQ9UQP3 1299 aa10.21□□□□□ -0.77
CPNE3-209ENST00000620393 GABBR2O75899 941 aa10.2□□□□□ -0.78
CPNE3-209ENST00000620393 DDX58O95786 925 aaKnown RBP10.2□□□□□ -0.78
CPNE3-209ENST00000620393 RLBP1P12271 317 aa10.2□□□□□ -0.78
CPNE3-209ENST00000620393 PIP4K2AP48426 406 aaPredicted RBP10.2□□□□□ -0.78
CPNE3-209ENST00000620393 KCNQ4P56696 695 aa10.2□□□□□ -0.78
CPNE3-209ENST00000620393 IRX6P78412 446 aaPredicted RBP10.2□□□□□ -0.78
CPNE3-209ENST00000620393 FKBP5Q13451 457 aaPredicted RBP10.2□□□□□ -0.78
CPNE3-209ENST00000620393 SLC27A3Q5K4L6 730 aa10.2□□□□□ -0.78
CPNE3-209ENST00000620393 RC3H1Q5TC82 1133 aaKnown RBP10.2□□□□□ -0.78
CPNE3-209ENST00000620393 PANK1Q8TE04 598 aa10.2□□□□□ -0.78
CPNE3-209ENST00000620393 XAGE3Q8WTP9 111 aa10.2□□□□□ -0.78
CPNE3-209ENST00000620393 CLUAP1Q96AJ1 413 aa10.2□□□□□ -0.78
CPNE3-209ENST00000620393 CCDC87Q9NVE4 849 aa10.2□□□□□ -0.78
CPNE3-209ENST00000620393 IL6STP40189 918 aaPredicted RBP10.19□□□□□ -0.78
CPNE3-209ENST00000620393 CRKLP46109 303 aaKnown RBP10.19□□□□□ -0.78
CPNE3-209ENST00000620393 AIMP1Q12904 312 aaKnown RBP10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms