RNA–Protein interactions for RNA: ENST00000619887.4

CDH23-213, Transcript of cadherin related 23, human

TSL 1 (best) BASIC

Gene CDH23, Length 4,224 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDH23-213	ENST00000619887	TOMM22	Q9NS69	142 aa		11.97	□□□□□ -0.49
CDH23-213	ENST00000619887	PTPRU	Q92729	1446 aa		11.96	□□□□□ -0.49
CDH23-213	ENST00000619887	GNL2	Q13823	731 aa	Known RBP	11.96	□□□□□ -0.49
CDH23-213	ENST00000619887	MAP3K2	Q9Y2U5	619 aa		11.96	□□□□□ -0.49
CDH23-213	ENST00000619887	CADPS2	Q86UW7	1296 aa		11.96	□□□□□ -0.49
CDH23-213	ENST00000619887	SIRT2	Q8IXJ6	389 aa		11.96	□□□□□ -0.49
CDH23-213	ENST00000619887	IL17RE	Q8NFR9	667 aa		11.96	□□□□□ -0.49
CDH23-213	ENST00000619887	GRPEL1	Q9HAV7	217 aa		11.96	□□□□□ -0.49
CDH23-213	ENST00000619887	WDR33	Q9C0J8	1336 aa	Known RBP	11.96	□□□□□ -0.5
CDH23-213	ENST00000619887	RNMT	O43148	476 aa	Known RBP	11.96	□□□□□ -0.5
CDH23-213	ENST00000619887	CDK11B	P21127	795 aa	Known RBP	11.96	□□□□□ -0.5
CDH23-213	ENST00000619887	RAB3GAP1	Q15042	981 aa		11.96	□□□□□ -0.5
CDH23-213	ENST00000619887	IFNL2	Q8IZJ0	200 aa		11.96	□□□□□ -0.5
CDH23-213	ENST00000619887	FAM43A	Q8N2R8	423 aa		11.96	□□□□□ -0.5
CDH23-213	ENST00000619887	HSP90B1	P14625	803 aa	Known RBP	11.95	□□□□□ -0.5
CDH23-213	ENST00000619887	KSR2	Q6VAB6	950 aa		11.95	□□□□□ -0.5
CDH23-213	ENST00000619887	LRRC59	Q96AG4	307 aa	Known RBP	11.95	□□□□□ -0.5
CDH23-213	ENST00000619887	MYL6B	P14649	208 aa		11.95	□□□□□ -0.5
CDH23-213	ENST00000619887	SSFA2	P28290	1259 aa		11.95	□□□□□ -0.5
CDH23-213	ENST00000619887	DIP2A	Q14689	1571 aa		11.95	□□□□□ -0.5
CDH23-213	ENST00000619887	GSPT1	P15170	499 aa	Known RBP	11.94	□□□□□ -0.5
CDH23-213	ENST00000619887	NBPF6	Q5VWK0	638 aa		11.94	□□□□□ -0.5
CDH23-213	ENST00000619887	NBPF4	Q96M43	638 aa		11.94	□□□□□ -0.5
CDH23-213	ENST00000619887	ECHDC1	Q9NTX5	307 aa		11.94	□□□□□ -0.5
CDH23-213	ENST00000619887	NPHP3	Q7Z494	1330 aa		11.94	□□□□□ -0.5
CDH23-213	ENST00000619887	PRPF40A	O75400	957 aa	Known RBP	11.94	□□□□□ -0.5
CDH23-213	ENST00000619887	MAP4K4	O95819	1239 aa	Predicted RBP	11.94	□□□□□ -0.5
CDH23-213	ENST00000619887	NASP	P49321	788 aa	Predicted RBP	11.94	□□□□□ -0.5
CDH23-213	ENST00000619887	OTUD7A	Q8TE49	926 aa	Predicted RBP	11.94	□□□□□ -0.5
CDH23-213	ENST00000619887	PRDM11	Q9NQV5	511 aa		11.94	□□□□□ -0.5
CDH23-213	ENST00000619887	CYP46A1	Q9Y6A2	500 aa		11.94	□□□□□ -0.5
CDH23-213	ENST00000619887	CAVIN1	Q6NZI2	390 aa	Known RBP	11.94	□□□□□ -0.5
CDH23-213	ENST00000619887	RBM42	Q9BTD8	480 aa	Known RBP	11.94	□□□□□ -0.5
CDH23-213	ENST00000619887	STRN4	Q9NRL3	753 aa		11.94	□□□□□ -0.5
CDH23-213	ENST00000619887	EIF4A1	P60842	406 aa	Known RBP	11.94	□□□□□ -0.5
CDH23-213	ENST00000619887	ZSCAN31	Q96LW9	406 aa	Predicted RBP	11.94	□□□□□ -0.5
CDH23-213	ENST00000619887	CWC27	Q6UX04	472 aa	Known RBP	11.93	□□□□□ -0.5
CDH23-213	ENST00000619887	LINS1	Q8NG48	757 aa		11.93	□□□□□ -0.5
CDH23-213	ENST00000619887	FMNL2	Q96PY5	1086 aa		11.93	□□□□□ -0.5
CDH23-213	ENST00000619887	PHAX	Q9H814	394 aa	Known RBP	11.93	□□□□□ -0.5
CDH23-213	ENST00000619887	KDR	P35968	1356 aa		11.93	□□□□□ -0.5
CDH23-213	ENST00000619887	BAG4	O95429	457 aa	Known RBP	11.93	□□□□□ -0.5
CDH23-213	ENST00000619887	PDIA4	P13667	645 aa	Known RBP	11.93	□□□□□ -0.5
CDH23-213	ENST00000619887	TOM1L2	Q6ZVM7	507 aa		11.93	□□□□□ -0.5
CDH23-213	ENST00000619887	ANTXR1	Q9H6X2	564 aa		11.93	□□□□□ -0.5
CDH23-213	ENST00000619887	TTC41P	Q6P2S7	1318 aa		11.93	□□□□□ -0.5
CDH23-213	ENST00000619887	TSHZ3	Q63HK5	1081 aa		11.93	□□□□□ -0.5
CDH23-213	ENST00000619887	ANXA1	P04083	346 aa		11.92	□□□□□ -0.5
CDH23-213	ENST00000619887	PDC	P20941	246 aa		11.92	□□□□□ -0.5
CDH23-213	ENST00000619887	ANKRD1	Q15327	319 aa		11.92	□□□□□ -0.5
CDH23-213	ENST00000619887	OSBPL3	Q9H4L5	887 aa		11.92	□□□□□ -0.5
CDH23-213	ENST00000619887	KNDC1	Q76NI1	1749 aa		11.92	□□□□□ -0.5
CDH23-213	ENST00000619887	CRB1	P82279	1406 aa		11.92	□□□□□ -0.5
CDH23-213	ENST00000619887	EPB41L2	O43491	1005 aa	Known RBP	11.92	□□□□□ -0.5
CDH23-213	ENST00000619887	EVI5L	Q96CN4	794 aa		11.92	□□□□□ -0.5
CDH23-213	ENST00000619887	SIL1	Q9H173	461 aa		11.92	□□□□□ -0.5
CDH23-213	ENST00000619887	NPHP4	O75161	1426 aa	Predicted RBP	11.92	□□□□□ -0.5
CDH23-213	ENST00000619887	SNRPA1	P09661	255 aa	Known RBP	11.91	□□□□□ -0.5
CDH23-213	ENST00000619887	CHML	P26374	656 aa		11.91	□□□□□ -0.5
CDH23-213	ENST00000619887	ORAI2	Q96SN7	254 aa		11.91	□□□□□ -0.5
CDH23-213	ENST00000619887	GRM8	O00222	908 aa		11.91	□□□□□ -0.5
CDH23-213	ENST00000619887	CCDC173	Q0VFZ6	552 aa		11.91	□□□□□ -0.5
CDH23-213	ENST00000619887	LGR6	Q9HBX8	967 aa		11.91	□□□□□ -0.5
CDH23-213	ENST00000619887	KLHL40	Q2TBA0	621 aa		11.91	□□□□□ -0.5
CDH23-213	ENST00000619887	MYD88	Q99836	296 aa		11.91	□□□□□ -0.5
CDH23-213	ENST00000619887	UPF3B	Q9BZI7	483 aa	Known RBP	11.91	□□□□□ -0.5
CDH23-213	ENST00000619887	DDX21	Q9NR30	783 aa	Known RBP eCLIP	11.91	□□□□□ -0.5
CDH23-213	ENST00000619887	PNMA6E	A0A0J9YXQ4	647 aa		11.91	□□□□□ -0.5
CDH23-213	ENST00000619887	SSH3	Q8TE77	659 aa		11.91	□□□□□ -0.5
CDH23-213	ENST00000619887	ADGRL3	Q9HAR2	1447 aa		11.9	□□□□□ -0.5
CDH23-213	ENST00000619887	FAM184A	Q8NB25	1140 aa		11.9	□□□□□ -0.5
CDH23-213	ENST00000619887	VPS37C	A5D8V6	355 aa	Predicted RBP	11.9	□□□□□ -0.5
CDH23-213	ENST00000619887	NEUROD6	Q96NK8	337 aa		11.9	□□□□□ -0.5
CDH23-213	ENST00000619887	USP44	Q9H0E7	712 aa		11.9	□□□□□ -0.5
CDH23-213	ENST00000619887	IBTK	Q9P2D0	1353 aa	Predicted RBP	11.9	□□□□□ -0.5
CDH23-213	ENST00000619887	TMX3	Q96JJ7	454 aa		11.9	□□□□□ -0.51
CDH23-213	ENST00000619887	PDRG1	Q9NUG6	133 aa		11.9	□□□□□ -0.51
CDH23-213	ENST00000619887	SSH2	Q76I76	1423 aa		11.89	□□□□□ -0.51
CDH23-213	ENST00000619887	SLIT1	O75093	1534 aa		11.89	□□□□□ -0.51
CDH23-213	ENST00000619887		H3BQV1	296 aa		11.89	□□□□□ -0.51
CDH23-213	ENST00000619887	KRT32	Q14532	448 aa		11.89	□□□□□ -0.51
CDH23-213	ENST00000619887	IFFO2	Q5TF58	517 aa		11.89	□□□□□ -0.51
CDH23-213	ENST00000619887	JAKMIP1	Q96N16	626 aa	Known RBP	11.89	□□□□□ -0.51
CDH23-213	ENST00000619887	UBR1	Q8IWV7	1749 aa		11.89	□□□□□ -0.51
CDH23-213	ENST00000619887	LETM1	O95202	739 aa	Predicted RBP	11.89	□□□□□ -0.51
CDH23-213	ENST00000619887	KIAA2012	Q0VF49	1180 aa		11.89	□□□□□ -0.51
CDH23-213	ENST00000619887	SH2B1	Q9NRF2	756 aa	Predicted RBP	11.89	□□□□□ -0.51
CDH23-213	ENST00000619887	FAM177B	A6PVY3	158 aa		11.89	□□□□□ -0.51
CDH23-213	ENST00000619887	ARHGEF25	Q86VW2	580 aa		11.89	□□□□□ -0.51
CDH23-213	ENST00000619887	BLOC1S2	Q6QNY1	142 aa		11.88	□□□□□ -0.51
CDH23-213	ENST00000619887	LIMCH1	Q9UPQ0	1083 aa		11.88	□□□□□ -0.51
CDH23-213	ENST00000619887	MON2	Q7Z3U7	1717 aa		11.88	□□□□□ -0.51
CDH23-213	ENST00000619887	ARHGAP23	Q9P227	1491 aa		11.88	□□□□□ -0.51
CDH23-213	ENST00000619887		G3V3G9	751 aa		11.88	□□□□□ -0.51
CDH23-213	ENST00000619887	CAST	P20810	708 aa	Known RBP	11.88	□□□□□ -0.51
CDH23-213	ENST00000619887	DCAF8	Q5TAQ9	597 aa		11.88	□□□□□ -0.51
CDH23-213	ENST00000619887	KIF6	Q6ZMV9	814 aa		11.88	□□□□□ -0.51
CDH23-213	ENST00000619887	INTS4	Q96HW7	963 aa	Known RBP	11.88	□□□□□ -0.51
CDH23-213	ENST00000619887	DCAF5	Q96JK2	942 aa		11.88	□□□□□ -0.51
CDH23-213	ENST00000619887	NCAPD2	Q15021	1401 aa		11.88	□□□□□ -0.51

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