RNA–Protein interactions for RNA: ENST00000607419.1

LINC01954-201, Transcript of long intergenic non-protein coding RNA 1954, humanhuman

TSL 1 (best) BASIC

Gene LINC01954, Length 461 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01954-201ENST00000607419 GNPATO15228 680 aa13.66□□□□□ -0.22
LINC01954-201ENST00000607419 NKX1-1Q15270 411 aaPredicted RBP13.66□□□□□ -0.22
LINC01954-201ENST00000607419 POTEHQ6S545 545 aa13.66□□□□□ -0.22
LINC01954-201ENST00000607419 SMARCC1Q92922 1105 aaPredicted RBP13.66□□□□□ -0.22
LINC01954-201ENST00000607419 RUNDC1Q96C34 613 aa13.66□□□□□ -0.22
LINC01954-201ENST00000607419 TNRC6CQ9HCJ0 1690 aaKnown RBP13.66□□□□□ -0.22
LINC01954-201ENST00000607419 C10orf71Q711Q0 1435 aa13.65□□□□□ -0.22
LINC01954-201ENST00000607419 PLEKHF1Q96S99 279 aa13.65□□□□□ -0.22
LINC01954-201ENST00000607419 MAPK8IP3Q9UPT6 1336 aa13.64□□□□□ -0.23
LINC01954-201ENST00000607419 ATP6V1AP38606 617 aa13.64□□□□□ -0.23
LINC01954-201ENST00000607419 FSTL1Q12841 308 aa13.64□□□□□ -0.23
LINC01954-201ENST00000607419 CCDC146Q8IYE0 955 aa13.64□□□□□ -0.23
LINC01954-201ENST00000607419 ATG3Q9NT62 314 aa13.64□□□□□ -0.23
LINC01954-201ENST00000607419 HSPA1AP0DMV8 641 aaKnown RBP13.63□□□□□ -0.23
LINC01954-201ENST00000607419 HSPA1BP0DMV9 641 aaKnown RBP13.63□□□□□ -0.23
LINC01954-201ENST00000607419 ARHGEF1Q92888 912 aaKnown RBP13.63□□□□□ -0.23
LINC01954-201ENST00000607419 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.63□□□□□ -0.23
LINC01954-201ENST00000607419 SCN11AQ9UI33 1791 aa13.63□□□□□ -0.23
LINC01954-201ENST00000607419 GYS1P13807 737 aa13.62□□□□□ -0.23
LINC01954-201ENST00000607419 AMOTQ4VCS5 1084 aa13.62□□□□□ -0.23
LINC01954-201ENST00000607419 PLEKHO1Q53GL0 409 aaPredicted RBP13.62□□□□□ -0.23
LINC01954-201ENST00000607419 AFDNP55196 1824 aaKnown RBP13.62□□□□□ -0.23
LINC01954-201ENST00000607419 ZNF831Q5JPB2 1677 aa13.61□□□□□ -0.23
LINC01954-201ENST00000607419 TRAPPC3LQ5T215 181 aa13.61□□□□□ -0.23
LINC01954-201ENST00000607419 C16orf71Q8IYS4 520 aaPredicted RBP13.61□□□□□ -0.23
LINC01954-201ENST00000607419 DCAF5Q96JK2 942 aa13.61□□□□□ -0.23
LINC01954-201ENST00000607419 PHACTR3Q96KR7 559 aa13.61□□□□□ -0.23
LINC01954-201ENST00000607419 SPG7Q9UQ90 795 aa13.61□□□□□ -0.23
LINC01954-201ENST00000607419 ADAMTS7Q9UKP4 1686 aa13.6□□□□□ -0.23
LINC01954-201ENST00000607419 APAF1O14727 1248 aa13.6□□□□□ -0.23
LINC01954-201ENST00000607419 GAS2L2Q8NHY3 880 aa13.6□□□□□ -0.23
LINC01954-201ENST00000607419 RNF181Q9P0P0 153 aa13.6□□□□□ -0.23
LINC01954-201ENST00000607419 CHRNA5P30532 468 aa13.59□□□□□ -0.23
LINC01954-201ENST00000607419 TMPOP42166 694 aaKnown RBP13.59□□□□□ -0.23
LINC01954-201ENST00000607419 NFE2L2Q16236 605 aa13.59□□□□□ -0.23
LINC01954-201ENST00000607419 MTHFSDQ2M296 383 aaKnown RBP13.59□□□□□ -0.23
LINC01954-201ENST00000607419 NLGN1Q8N2Q7 840 aa13.59□□□□□ -0.23
LINC01954-201ENST00000607419 NGEFQ8N5V2 710 aa13.59□□□□□ -0.23
LINC01954-201ENST00000607419 POTECB2RU33 542 aa13.58□□□□□ -0.24
LINC01954-201ENST00000607419 HMGB2P26583 209 aaKnown RBP13.58□□□□□ -0.24
LINC01954-201ENST00000607419 CCDC87Q9NVE4 849 aa13.58□□□□□ -0.24
LINC01954-201ENST00000607419 TMOD3Q9NYL9 352 aa13.58□□□□□ -0.24
LINC01954-201ENST00000607419 PIM2Q9P1W9 311 aa13.58□□□□□ -0.24
LINC01954-201ENST00000607419 RTCBQ9Y3I0 505 aaKnown RBP13.58□□□□□ -0.24
LINC01954-201ENST00000607419 PHKG2P15735 406 aa13.57□□□□□ -0.24
LINC01954-201ENST00000607419 RASSF7Q02833 373 aa13.57□□□□□ -0.24
LINC01954-201ENST00000607419 DDR1Q08345 913 aa13.57□□□□□ -0.24
LINC01954-201ENST00000607419 ZNF530Q6P9A1 599 aaPredicted RBP13.57□□□□□ -0.24
LINC01954-201ENST00000607419 SRP68Q9UHB9 627 aaKnown RBP13.57□□□□□ -0.24
LINC01954-201ENST00000607419 SIPA1L3O60292 1781 aaPredicted RBP13.57□□□□□ -0.24
LINC01954-201ENST00000607419 TIAM2Q8IVF5 1701 aa13.56□□□□□ -0.24
LINC01954-201ENST00000607419 RPS6KA4O75676 772 aa13.56□□□□□ -0.24
LINC01954-201ENST00000607419 DSG3P32926 999 aa13.56□□□□□ -0.24
LINC01954-201ENST00000607419 RIPK4P57078 832 aa13.56□□□□□ -0.24
LINC01954-201ENST00000607419 FKBP8Q14318 412 aa13.56□□□□□ -0.24
LINC01954-201ENST00000607419 AKAP4Q5JQC9 854 aa13.56□□□□□ -0.24
LINC01954-201ENST00000607419 C1orf141Q5JVX7 400 aa13.56□□□□□ -0.24
LINC01954-201ENST00000607419 IFNL2Q8IZJ0 200 aa13.56□□□□□ -0.24
LINC01954-201ENST00000607419 PARP3Q9Y6F1 533 aa13.56□□□□□ -0.24
LINC01954-201ENST00000607419 KDM2BQ8NHM5 1336 aa13.56□□□□□ -0.24
LINC01954-201ENST00000607419 DICER1Q9UPY3 1922 aaKnown RBP13.55□□□□□ -0.24
LINC01954-201ENST00000607419 GNAT3A8MTJ3 354 aa13.55□□□□□ -0.24
LINC01954-201ENST00000607419 HTATSF1O43719 755 aaKnown RBP13.55□□□□□ -0.24
LINC01954-201ENST00000607419 HNRNPUQ00839 825 aaKnown RBP eCLIP13.55□□□□□ -0.24
LINC01954-201ENST00000607419 LMOD3Q0VAK6 560 aa13.55□□□□□ -0.24
LINC01954-201ENST00000607419 NEUROD2Q15784 382 aa13.55□□□□□ -0.24
LINC01954-201ENST00000607419 RC3H1Q5TC82 1133 aaKnown RBP13.55□□□□□ -0.24
LINC01954-201ENST00000607419 SMC1BQ8NDV3 1235 aa13.55□□□□□ -0.24
LINC01954-201ENST00000607419 RBM42Q9BTD8 480 aaKnown RBP13.55□□□□□ -0.24
LINC01954-201ENST00000607419 RRP7AQ9Y3A4 280 aaKnown RBP13.55□□□□□ -0.24
LINC01954-201ENST00000607419 TJP1Q07157 1748 aa13.55□□□□□ -0.24
LINC01954-201ENST00000607419 DLEC1Q9Y238 1755 aa13.54□□□□□ -0.24
LINC01954-201ENST00000607419 HSP90AB1P08238 724 aaKnown RBP13.54□□□□□ -0.24
LINC01954-201ENST00000607419 RFC4P35249 363 aa13.54□□□□□ -0.24
LINC01954-201ENST00000607419 CCDC27Q2M243 656 aa13.54□□□□□ -0.24
LINC01954-201ENST00000607419 DALRD3Q5D0E6 543 aaKnown RBP13.54□□□□□ -0.24
LINC01954-201ENST00000607419 SLC34A2O95436 690 aa13.53□□□□□ -0.24
LINC01954-201ENST00000607419 RTF1Q92541 710 aaKnown RBP13.53□□□□□ -0.24
LINC01954-201ENST00000607419 KDM6AO15550 1401 aaPredicted RBP13.53□□□□□ -0.24
LINC01954-201ENST00000607419 GLTPD2A6NH11 291 aa13.52□□□□□ -0.25
LINC01954-201ENST00000607419 TM4SF1P30408 202 aa13.52□□□□□ -0.25
LINC01954-201ENST00000607419 TRIM35Q9UPQ4 493 aa13.52□□□□□ -0.25
LINC01954-201ENST00000607419 SALL2Q9Y467 1007 aaPredicted RBP13.52□□□□□ -0.25
LINC01954-201ENST00000607419 NRXN2Q9P2S2 1712 aa13.52□□□□□ -0.25
LINC01954-201ENST00000607419 CNTNAP4Q9C0A0 1308 aa13.51□□□□□ -0.25
LINC01954-201ENST00000607419 POLRMTO00411 1230 aaKnown RBP13.51□□□□□ -0.25
LINC01954-201ENST00000607419 WWC1Q8IX03 1113 aa13.51□□□□□ -0.25
LINC01954-201ENST00000607419 SPINK5Q9NQ38 1064 aaPredicted RBP13.51□□□□□ -0.25
LINC01954-201ENST00000607419 ZBED9Q6R2W3 1325 aa13.5□□□□□ -0.25
LINC01954-201ENST00000607419 FOXN1O15353 648 aa13.5□□□□□ -0.25
LINC01954-201ENST00000607419 POTEIP0CG38 1075 aa13.5□□□□□ -0.25
LINC01954-201ENST00000607419 POTEJP0CG39 1038 aa13.5□□□□□ -0.25
LINC01954-201ENST00000607419 VEGFAP15692 232 aaPredicted RBP13.5□□□□□ -0.25
LINC01954-201ENST00000607419 YTHDC1Q96MU7 727 aaKnown RBP13.5□□□□□ -0.25
LINC01954-201ENST00000607419 CACNA1SQ13698 1873 aa13.5□□□□□ -0.25
LINC01954-201ENST00000607419 FER1L6Q2WGJ9 1857 aa13.5□□□□□ -0.25
LINC01954-201ENST00000607419 KDM3BQ7LBC6 1761 aa13.5□□□□□ -0.25
LINC01954-201ENST00000607419 CEMIPQ8WUJ3 1361 aa13.49□□□□□ -0.25
LINC01954-201ENST00000607419 ANKRD31Q8N7Z5 1873 aa13.49□□□□□ -0.25
LINC01954-201ENST00000607419 RNMTO43148 476 aaKnown RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms