RNA–Protein interactions for RNA: ENST00000606170.1

PRDM16-209, Transcript of PR/SET domain 16, humanhuman

TSL 4

Gene PRDM16, Length 557 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRDM16-209ENST00000606170 GRIN3BO60391 1043 aa22.3■■□□□ 1.16
PRDM16-209ENST00000606170 USPL1Q5W0Q7 1092 aa22.3■■□□□ 1.16
PRDM16-209ENST00000606170 SIPA1L3O60292 1781 aaPredicted RBP22.3■■□□□ 1.16
PRDM16-209ENST00000606170 COL15A1P39059 1388 aa22.29■■□□□ 1.16
PRDM16-209ENST00000606170 HTATSF1O43719 755 aaKnown RBP22.29■■□□□ 1.16
PRDM16-209ENST00000606170 PLEKHF1Q96S99 279 aa22.29■■□□□ 1.16
PRDM16-209ENST00000606170 TEX13AQ9BXU3 409 aaPredicted RBP22.29■■□□□ 1.16
PRDM16-209ENST00000606170 PNNQ9H307 717 aaKnown RBP22.29■■□□□ 1.16
PRDM16-209ENST00000606170 MYBBP1AQ9BQG0 1328 aaKnown RBP22.28■■□□□ 1.16
PRDM16-209ENST00000606170 MAPK8IP3Q9UPT6 1336 aa22.28■■□□□ 1.16
PRDM16-209ENST00000606170 ZNF330Q9Y3S2 320 aaPredicted RBP22.27■■□□□ 1.16
PRDM16-209ENST00000606170 NARFQ9UHQ1 456 aa22.26■■□□□ 1.15
PRDM16-209ENST00000606170 ZEB1P37275 1124 aaPredicted RBP22.25■■□□□ 1.15
PRDM16-209ENST00000606170 CHD4Q14839 1912 aa22.25■■□□□ 1.15
PRDM16-209ENST00000606170 C10orf71Q711Q0 1435 aa22.24■■□□□ 1.15
PRDM16-209ENST00000606170 TGFB2P61812 414 aa22.24■■□□□ 1.15
PRDM16-209ENST00000606170 DDR1Q08345 913 aa22.24■■□□□ 1.15
PRDM16-209ENST00000606170 TAF7Q15545 349 aaPredicted RBP22.24■■□□□ 1.15
PRDM16-209ENST00000606170 NFE2L2Q16236 605 aa22.24■■□□□ 1.15
PRDM16-209ENST00000606170 A0A0G2JLW4 131 aa22.23■■□□□ 1.15
PRDM16-209ENST00000606170 A1BGP04217 495 aa22.23■■□□□ 1.15
PRDM16-209ENST00000606170 EIF5P55010 431 aaKnown RBP22.23■■□□□ 1.15
PRDM16-209ENST00000606170 ZNF784Q8NCA9 323 aaPredicted RBP22.23■■□□□ 1.15
PRDM16-209ENST00000606170 MIS18AQ9NYP9 233 aa22.23■■□□□ 1.15
PRDM16-209ENST00000606170 PXDNLA1KZ92 1463 aa22.22■■□□□ 1.15
PRDM16-209ENST00000606170 PRAMEF22A3QJZ6 481 aa22.22■■□□□ 1.15
PRDM16-209ENST00000606170 POLRMTO00411 1230 aaKnown RBP22.22■■□□□ 1.15
PRDM16-209ENST00000606170 TM4SF1P30408 202 aa22.22■■□□□ 1.15
PRDM16-209ENST00000606170 NPM2Q86SE8 214 aaKnown RBP22.22■■□□□ 1.15
PRDM16-209ENST00000606170 USP16Q9Y5T5 823 aa22.22■■□□□ 1.15
PRDM16-209ENST00000606170 A0A087WZG4 1122 aa22.21■■□□□ 1.15
PRDM16-209ENST00000606170 SNRPA1P09661 255 aaKnown RBP22.21■■□□□ 1.15
PRDM16-209ENST00000606170 THUMPD2Q9BTF0 503 aaKnown RBP22.21■■□□□ 1.15
PRDM16-209ENST00000606170 DPEP1P16444 411 aa22.2■■□□□ 1.14
PRDM16-209ENST00000606170 IL6STP40189 918 aaPredicted RBP22.2■■□□□ 1.14
PRDM16-209ENST00000606170 NFIXQ14938 502 aa22.2■■□□□ 1.14
PRDM16-209ENST00000606170 BCL2L12Q9HB09 334 aa22.2■■□□□ 1.14
PRDM16-209ENST00000606170 TBC1D2BQ9UPU7 963 aa22.2■■□□□ 1.14
PRDM16-209ENST00000606170 PIP4K2AP48426 406 aaPredicted RBP22.19■■□□□ 1.14
PRDM16-209ENST00000606170 BICDL1Q6ZP65 573 aa22.19■■□□□ 1.14
PRDM16-209ENST00000606170 BCS1LQ9Y276 419 aa22.19■■□□□ 1.14
PRDM16-209ENST00000606170 KIF13BQ9NQT8 1826 aa22.19■■□□□ 1.14
PRDM16-209ENST00000606170 WDR43Q15061 677 aaKnown RBP eCLIP22.18■■□□□ 1.14
PRDM16-209ENST00000606170 PNISRQ8TF01 805 aaKnown RBP22.18■■□□□ 1.14
PRDM16-209ENST00000606170 PRKRIP1Q9H875 184 aaPredicted RBP22.18■■□□□ 1.14
PRDM16-209ENST00000606170 DLG5Q8TDM6 1919 aa22.18■■□□□ 1.14
PRDM16-209ENST00000606170 N4BP2Q86UW6 1770 aaPredicted RBP22.17■■□□□ 1.14
PRDM16-209ENST00000606170 RIPK4P57078 832 aa22.17■■□□□ 1.14
PRDM16-209ENST00000606170 CCDC146Q8IYE0 955 aa22.17■■□□□ 1.14
PRDM16-209ENST00000606170 SERPINB2P05120 415 aa22.16■■□□□ 1.14
PRDM16-209ENST00000606170 KIAA1551Q9HCM1 1747 aa22.15■■□□□ 1.14
PRDM16-209ENST00000606170 TMPOP42166 694 aaKnown RBP22.14■■□□□ 1.13
PRDM16-209ENST00000606170 TBC1D9BQ66K14 1250 aa22.14■■□□□ 1.13
PRDM16-209ENST00000606170 DZIP3Q86Y13 1208 aaKnown RBP22.14■■□□□ 1.13
PRDM16-209ENST00000606170 KCNA3P22001 575 aa22.13■■□□□ 1.13
PRDM16-209ENST00000606170 CHRNA5P30532 468 aa22.13■■□□□ 1.13
PRDM16-209ENST00000606170 RRP7AQ9Y3A4 280 aaKnown RBP22.13■■□□□ 1.13
PRDM16-209ENST00000606170 NEUROD2Q15784 382 aa22.12■■□□□ 1.13
PRDM16-209ENST00000606170 PIM2Q9P1W9 311 aa22.12■■□□□ 1.13
PRDM16-209ENST00000606170 CAMTA2O94983 1202 aa22.11■■□□□ 1.13
PRDM16-209ENST00000606170 EIF4A1P60842 406 aaKnown RBP22.11■■□□□ 1.13
PRDM16-209ENST00000606170 LMOD3Q0VAK6 560 aa22.11■■□□□ 1.13
PRDM16-209ENST00000606170 ADAMTS8Q9UP79 889 aa22.11■■□□□ 1.13
PRDM16-209ENST00000606170 RUNDC1Q96C34 613 aa22.1■■□□□ 1.13
PRDM16-209ENST00000606170 TSPYL4Q9UJ04 414 aa22.1■■□□□ 1.13
PRDM16-209ENST00000606170 NBPF26B4DH59 902 aa22.09■■□□□ 1.13
PRDM16-209ENST00000606170 GIGYF1O75420 1035 aaPredicted RBP22.09■■□□□ 1.13
PRDM16-209ENST00000606170 NBPF10Q6P3W6 841 aaKnown RBP22.09■■□□□ 1.13
PRDM16-209ENST00000606170 ARHGAP27Q6ZUM4 889 aa22.09■■□□□ 1.13
PRDM16-209ENST00000606170 NBPF15Q8N660 670 aa22.09■■□□□ 1.13
PRDM16-209ENST00000606170 SCN7AQ01118 1682 aa22.09■■□□□ 1.13
PRDM16-209ENST00000606170 AFDNP55196 1824 aaKnown RBP22.08■■□□□ 1.13
PRDM16-209ENST00000606170 DALRD3Q5D0E6 543 aaKnown RBP22.08■■□□□ 1.13
PRDM16-209ENST00000606170 SETDB2Q96T68 719 aa22.08■■□□□ 1.13
PRDM16-209ENST00000606170 KDM3BQ7LBC6 1761 aa22.07■■□□□ 1.12
PRDM16-209ENST00000606170 NPHP1O15259 732 aa22.07■■□□□ 1.12
PRDM16-209ENST00000606170 NGEFQ8N5V2 710 aa22.07■■□□□ 1.12
PRDM16-209ENST00000606170 CARMIL3Q8ND23 1372 aa22.07■■□□□ 1.12
PRDM16-209ENST00000606170 CCDC24Q8N4L8 307 aa22.06■■□□□ 1.12
PRDM16-209ENST00000606170 ZNF652Q9Y2D9 606 aa22.06■■□□□ 1.12
PRDM16-209ENST00000606170 NRXN2Q9P2S2 1712 aa22.06■■□□□ 1.12
PRDM16-209ENST00000606170 ATP10DQ9P241 1426 aa22.05■■□□□ 1.12
PRDM16-209ENST00000606170 BRCA1P38398 1863 aaKnown RBP22.05■■□□□ 1.12
PRDM16-209ENST00000606170 ZNF316A6NFI3 1004 aaPredicted RBP22.04■■□□□ 1.12
PRDM16-209ENST00000606170 PRR5LQ6MZQ0 368 aa22.04■■□□□ 1.12
PRDM16-209ENST00000606170 C2CD5Q86YS7 1000 aa22.04■■□□□ 1.12
PRDM16-209ENST00000606170 ZNF526Q8TF50 670 aaPredicted RBP22.04■■□□□ 1.12
PRDM16-209ENST00000606170 LAMB4A4D0S4 1761 aa22.03■■□□□ 1.12
PRDM16-209ENST00000606170 H0YIN7 160 aa22.03■■□□□ 1.12
PRDM16-209ENST00000606170 MYL6BP14649 208 aa22.03■■□□□ 1.12
PRDM16-209ENST00000606170 CLEC4GQ6UXB4 293 aa22.03■■□□□ 1.12
PRDM16-209ENST00000606170 CNBD1Q8NA66 436 aa22.03■■□□□ 1.12
PRDM16-209ENST00000606170 LAS1LQ9Y4W2 734 aaKnown RBP22.03■■□□□ 1.12
PRDM16-209ENST00000606170 BCORQ6W2J9 1755 aa22.02■■□□□ 1.12
PRDM16-209ENST00000606170 TRIM35Q9UPQ4 493 aa22.02■■□□□ 1.12
PRDM16-209ENST00000606170 ADCY9O60503 1353 aa22.01■■□□□ 1.11
PRDM16-209ENST00000606170 BRIP1Q9BX63 1249 aa22.01■■□□□ 1.11
PRDM16-209ENST00000606170 BABAM1Q9NWV8 329 aa22.01■■□□□ 1.11
PRDM16-209ENST00000606170 EIF2S2P20042 333 aaKnown RBP22■■□□□ 1.11
PRDM16-209ENST00000606170 PDE6BP35913 854 aa22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms