RNA–Protein interactions for RNA: ENST00000600286.1

USHBP1-210, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 598 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-210ENST00000600286 LINC00116Q8NCU8 138 aa21.56■■□□□ 1.04
USHBP1-210ENST00000600286 YTHDC1Q96MU7 727 aaKnown RBP21.56■■□□□ 1.04
USHBP1-210ENST00000600286 FANCIQ9NVI1 1328 aa21.55■■□□□ 1.04
USHBP1-210ENST00000600286 KCPQ6ZWJ8 1503 aa21.55■■□□□ 1.04
USHBP1-210ENST00000600286 CYP19A1P11511 503 aaPredicted RBP21.55■■□□□ 1.04
USHBP1-210ENST00000600286 ZNF827Q17R98 1081 aa21.55■■□□□ 1.04
USHBP1-210ENST00000600286 DUSP27Q5VZP5 1158 aa21.55■■□□□ 1.04
USHBP1-210ENST00000600286 FLAD1Q8NFF5 587 aa21.55■■□□□ 1.04
USHBP1-210ENST00000600286 CCDC87Q9NVE4 849 aa21.55■■□□□ 1.04
USHBP1-210ENST00000600286 USP16Q9Y5T5 823 aa21.55■■□□□ 1.04
USHBP1-210ENST00000600286 EIF2S2P20042 333 aaKnown RBP21.54■■□□□ 1.04
USHBP1-210ENST00000600286 CRKLP46109 303 aaKnown RBP21.54■■□□□ 1.04
USHBP1-210ENST00000600286 AKT1S1Q96B36 256 aa21.54■■□□□ 1.04
USHBP1-210ENST00000600286 RTCBQ9Y3I0 505 aaKnown RBP21.54■■□□□ 1.04
USHBP1-210ENST00000600286 TAF1LQ8IZX4 1826 aa21.54■■□□□ 1.04
USHBP1-210ENST00000600286 CNTNAP4Q9C0A0 1308 aa21.54■■□□□ 1.04
USHBP1-210ENST00000600286 ELL2O00472 640 aaPredicted RBP21.53■■□□□ 1.04
USHBP1-210ENST00000600286 SPINK5Q9NQ38 1064 aaPredicted RBP21.53■■□□□ 1.04
USHBP1-210ENST00000600286 GNPATO15228 680 aa21.52■■□□□ 1.04
USHBP1-210ENST00000600286 TWISTNBQ3B726 338 aaPredicted RBP21.52■■□□□ 1.04
USHBP1-210ENST00000600286 HDGFL1Q5TGJ6 251 aa21.52■■□□□ 1.04
USHBP1-210ENST00000600286 CDCA7LQ96GN5 454 aa21.52■■□□□ 1.04
USHBP1-210ENST00000600286 ZBTB7AO95365 584 aa21.51■■□□□ 1.03
USHBP1-210ENST00000600286 EXOSC9Q06265 439 aaKnown RBP21.51■■□□□ 1.03
USHBP1-210ENST00000600286 C8orf58Q8NAV2 365 aa21.51■■□□□ 1.03
USHBP1-210ENST00000600286 PRAMEF22A3QJZ6 481 aa21.5■■□□□ 1.03
USHBP1-210ENST00000600286 RPS6KA4O75676 772 aa21.5■■□□□ 1.03
USHBP1-210ENST00000600286 CANXP27824 592 aaKnown RBP21.5■■□□□ 1.03
USHBP1-210ENST00000600286 TRAPPC3LQ5T215 181 aa21.5■■□□□ 1.03
USHBP1-210ENST00000600286 CCDC30Q5VVM6 783 aa21.5■■□□□ 1.03
USHBP1-210ENST00000600286 KDM3BQ7LBC6 1761 aa21.5■■□□□ 1.03
USHBP1-210ENST00000600286 ERBB4Q15303 1308 aa21.5■■□□□ 1.03
USHBP1-210ENST00000600286 A0A087WZG4 1122 aa21.49■■□□□ 1.03
USHBP1-210ENST00000600286 MSH5O43196 834 aa21.49■■□□□ 1.03
USHBP1-210ENST00000600286 A1BGP04217 495 aa21.49■■□□□ 1.03
USHBP1-210ENST00000600286 KRT24Q2M2I5 525 aa21.49■■□□□ 1.03
USHBP1-210ENST00000600286 INTS5Q6P9B9 1019 aaKnown RBP21.49■■□□□ 1.03
USHBP1-210ENST00000600286 C5P01031 1676 aa21.49■■□□□ 1.03
USHBP1-210ENST00000600286 ZNF831Q5JPB2 1677 aa21.49■■□□□ 1.03
USHBP1-210ENST00000600286 UBR2Q8IWV8 1755 aa21.48■■□□□ 1.03
USHBP1-210ENST00000600286 ADRA2BP18089 450 aa21.48■■□□□ 1.03
USHBP1-210ENST00000600286 SSFA2P28290 1259 aa21.48■■□□□ 1.03
USHBP1-210ENST00000600286 STK31Q9BXU1 1019 aa21.48■■□□□ 1.03
USHBP1-210ENST00000600286 MTFR1LQ9H019 292 aa21.48■■□□□ 1.03
USHBP1-210ENST00000600286 ZNF330Q9Y3S2 320 aaPredicted RBP21.48■■□□□ 1.03
USHBP1-210ENST00000600286 IL6STP40189 918 aaPredicted RBP21.47■■□□□ 1.03
USHBP1-210ENST00000600286 TRMT2AQ8IZ69 625 aaKnown RBP21.47■■□□□ 1.03
USHBP1-210ENST00000600286 NECTIN2Q92692 538 aa21.47■■□□□ 1.03
USHBP1-210ENST00000600286 ARXQ96QS3 562 aa21.47■■□□□ 1.03
USHBP1-210ENST00000600286 ATF5Q9Y2D1 282 aaPredicted RBP21.47■■□□□ 1.03
USHBP1-210ENST00000600286 PHF14O94880 888 aa21.46■■□□□ 1.03
USHBP1-210ENST00000600286 CT47B1P0C2W7 299 aaPredicted RBP21.46■■□□□ 1.03
USHBP1-210ENST00000600286 DBF4Q9UBU7 674 aaPredicted RBP21.46■■□□□ 1.03
USHBP1-210ENST00000600286 PPP1R1BQ9UD71 204 aaPredicted RBP21.46■■□□□ 1.03
USHBP1-210ENST00000600286 ZBTB1Q9Y2K1 713 aa21.46■■□□□ 1.03
USHBP1-210ENST00000600286 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.45■■□□□ 1.02
USHBP1-210ENST00000600286 RFC4P35249 363 aa21.45■■□□□ 1.02
USHBP1-210ENST00000600286 TSPYL6Q8N831 410 aa21.45■■□□□ 1.02
USHBP1-210ENST00000600286 ZNF428Q96B54 188 aa21.45■■□□□ 1.02
USHBP1-210ENST00000600286 PNPLA7Q6ZV29 1317 aa21.45■■□□□ 1.02
USHBP1-210ENST00000600286 VAMP4O75379 141 aa21.44■■□□□ 1.02
USHBP1-210ENST00000600286 MYL6BP14649 208 aa21.44■■□□□ 1.02
USHBP1-210ENST00000600286 DDX21Q9NR30 783 aaKnown RBP eCLIP21.44■■□□□ 1.02
USHBP1-210ENST00000600286 HYPKQ9NX55 129 aa21.44■■□□□ 1.02
USHBP1-210ENST00000600286 GOLGB1Q14789 3259 aaKnown RBP21.44■■□□□ 1.02
USHBP1-210ENST00000600286 ZPR1O75312 459 aa21.43■■□□□ 1.02
USHBP1-210ENST00000600286 C4BP0C0L5 1744 aa21.43■■□□□ 1.02
USHBP1-210ENST00000600286 EIF5P55010 431 aaKnown RBP21.42■■□□□ 1.02
USHBP1-210ENST00000600286 CICQ96RK0 1608 aaPredicted RBP21.41■■□□□ 1.02
USHBP1-210ENST00000600286 SLC16A10Q8TF71 515 aa21.41■■□□□ 1.02
USHBP1-210ENST00000600286 ARHGEF1Q92888 912 aaKnown RBP21.41■■□□□ 1.02
USHBP1-210ENST00000600286 CHPF2Q9P2E5 772 aa21.41■■□□□ 1.02
USHBP1-210ENST00000600286 TJP1Q07157 1748 aa21.41■■□□□ 1.02
USHBP1-210ENST00000600286 NBPF26B4DH59 902 aa21.4■■□□□ 1.02
USHBP1-210ENST00000600286 PIP4K2AP48426 406 aaPredicted RBP21.4■■□□□ 1.02
USHBP1-210ENST00000600286 NBPF10Q6P3W6 841 aaKnown RBP21.4■■□□□ 1.02
USHBP1-210ENST00000600286 KIF6Q6ZMV9 814 aa21.4■■□□□ 1.02
USHBP1-210ENST00000600286 NBPF15Q8N660 670 aa21.4■■□□□ 1.02
USHBP1-210ENST00000600286 SYT17Q9BSW7 474 aa21.4■■□□□ 1.02
USHBP1-210ENST00000600286 FHDC1Q9C0D6 1143 aaPredicted RBP21.4■■□□□ 1.02
USHBP1-210ENST00000600286 UBR3Q6ZT12 1888 aa21.4■■□□□ 1.02
USHBP1-210ENST00000600286 COL15A1P39059 1388 aa21.39■■□□□ 1.02
USHBP1-210ENST00000600286 DZIP3Q86Y13 1208 aaKnown RBP21.39■■□□□ 1.01
USHBP1-210ENST00000600286 COL23A1Q86Y22 540 aaPredicted RBP21.39■■□□□ 1.01
USHBP1-210ENST00000600286 SLC4A2P04920 1241 aa21.38■■□□□ 1.01
USHBP1-210ENST00000600286 DDX58O95786 925 aaKnown RBP21.37■■□□□ 1.01
USHBP1-210ENST00000600286 AIMP1Q12904 312 aaKnown RBP21.37■■□□□ 1.01
USHBP1-210ENST00000600286 PDIA6Q15084 440 aa21.37■■□□□ 1.01
USHBP1-210ENST00000600286 NARFQ9UHQ1 456 aa21.37■■□□□ 1.01
USHBP1-210ENST00000600286 ZNF652Q9Y2D9 606 aa21.37■■□□□ 1.01
USHBP1-210ENST00000600286 CHD4Q14839 1912 aa21.37■■□□□ 1.01
USHBP1-210ENST00000600286 COL5A3P25940 1745 aaPredicted RBP21.36■■□□□ 1.01
USHBP1-210ENST00000600286 TCERG1O14776 1098 aaKnown RBP21.36■■□□□ 1.01
USHBP1-210ENST00000600286 ALDH1L2Q3SY69 923 aa21.36■■□□□ 1.01
USHBP1-210ENST00000600286 COPS6Q7L5N1 327 aa21.36■■□□□ 1.01
USHBP1-210ENST00000600286 TBC1D2BQ9UPU7 963 aa21.36■■□□□ 1.01
USHBP1-210ENST00000600286 ANXA1P04083 346 aa21.35■■□□□ 1.01
USHBP1-210ENST00000600286 SMIM5Q71RC9 77 aa21.35■■□□□ 1.01
USHBP1-210ENST00000600286 NLGN1Q8N2Q7 840 aa21.35■■□□□ 1.01
USHBP1-210ENST00000600286 XAGE3Q8WTP9 111 aa21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms