RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 DNAJC10Q8IXB1 793 aa16.81■□□□□ 0.28
UPF1-208ENST00000600012 PIM2Q9P1W9 311 aa16.81■□□□□ 0.28
UPF1-208ENST00000600012 RNMTO43148 476 aaKnown RBP16.8■□□□□ 0.28
UPF1-208ENST00000600012 HMOX1P09601 288 aa16.8■□□□□ 0.28
UPF1-208ENST00000600012 LGR6Q9HBX8 967 aa16.8■□□□□ 0.28
UPF1-208ENST00000600012 KCPQ6ZWJ8 1503 aa16.8■□□□□ 0.28
UPF1-208ENST00000600012 UBR2Q8IWV8 1755 aa16.79■□□□□ 0.28
UPF1-208ENST00000600012 SOS1Q07889 1333 aaPredicted RBP16.79■□□□□ 0.28
UPF1-208ENST00000600012 ZPR1O75312 459 aa16.79■□□□□ 0.28
UPF1-208ENST00000600012 AFDNP55196 1824 aaKnown RBP16.79■□□□□ 0.28
UPF1-208ENST00000600012 POLRMTO00411 1230 aaKnown RBP16.78■□□□□ 0.28
UPF1-208ENST00000600012 DIAPH1O60610 1272 aaKnown RBP16.78■□□□□ 0.28
UPF1-208ENST00000600012 CYP19A1P11511 503 aaPredicted RBP16.78■□□□□ 0.28
UPF1-208ENST00000600012 TM4SF1P30408 202 aa16.78■□□□□ 0.28
UPF1-208ENST00000600012 DALRD3Q5D0E6 543 aaKnown RBP16.78■□□□□ 0.28
UPF1-208ENST00000600012 CFAP53Q96M91 514 aa16.78■□□□□ 0.28
UPF1-208ENST00000600012 COL15A1P39059 1388 aa16.77■□□□□ 0.28
UPF1-208ENST00000600012 TOMM70O94826 608 aa16.77■□□□□ 0.28
UPF1-208ENST00000600012 SLC39A6Q13433 755 aa16.77■□□□□ 0.28
UPF1-208ENST00000600012 MTHFSDQ2M296 383 aaKnown RBP16.77■□□□□ 0.28
UPF1-208ENST00000600012 USPL1Q5W0Q7 1092 aa16.77■□□□□ 0.28
UPF1-208ENST00000600012 SBF1O95248 1867 aa16.77■□□□□ 0.27
UPF1-208ENST00000600012 NRXN2Q9P2S2 1712 aa16.76■□□□□ 0.27
UPF1-208ENST00000600012 WDR43Q15061 677 aaKnown RBP eCLIP16.76■□□□□ 0.27
UPF1-208ENST00000600012 C9orf131Q5VYM1 1079 aa16.76■□□□□ 0.27
UPF1-208ENST00000600012 VSIG10Q8N0Z9 540 aa16.76■□□□□ 0.27
UPF1-208ENST00000600012 NARFQ9UHQ1 456 aa16.76■□□□□ 0.27
UPF1-208ENST00000600012 DLEC1Q9Y238 1755 aa16.75■□□□□ 0.27
UPF1-208ENST00000600012 CHRNA5P30532 468 aa16.75■□□□□ 0.27
UPF1-208ENST00000600012 APLP1P51693 650 aa16.75■□□□□ 0.27
UPF1-208ENST00000600012 NMRK2Q9NPI5 230 aa16.75■□□□□ 0.27
UPF1-208ENST00000600012 IFFO2Q5TF58 517 aa16.74■□□□□ 0.27
UPF1-208ENST00000600012 ZBTB1Q9Y2K1 713 aa16.74■□□□□ 0.27
UPF1-208ENST00000600012 NFIXQ14938 502 aa16.73■□□□□ 0.27
UPF1-208ENST00000600012 KDM2BQ8NHM5 1336 aa16.72■□□□□ 0.27
UPF1-208ENST00000600012 TNRC6CQ9HCJ0 1690 aaKnown RBP16.72■□□□□ 0.27
UPF1-208ENST00000600012 SIPA1L3O60292 1781 aaPredicted RBP16.72■□□□□ 0.27
UPF1-208ENST00000600012 HNRNPUQ00839 825 aaKnown RBP eCLIP16.72■□□□□ 0.27
UPF1-208ENST00000600012 TTC5Q8N0Z6 440 aa16.72■□□□□ 0.27
UPF1-208ENST00000600012 RNF181Q9P0P0 153 aa16.72■□□□□ 0.27
UPF1-208ENST00000600012 ADAMTS8Q9UP79 889 aa16.72■□□□□ 0.27
UPF1-208ENST00000600012 STARD3NLO95772 234 aa16.71■□□□□ 0.27
UPF1-208ENST00000600012 RBM46Q8TBY0 533 aaKnown RBP16.71■□□□□ 0.27
UPF1-208ENST00000600012 SERPINB2P05120 415 aa16.7■□□□□ 0.26
UPF1-208ENST00000600012 CANXP27824 592 aaKnown RBP16.7■□□□□ 0.26
UPF1-208ENST00000600012 TEFQ10587 303 aa16.7■□□□□ 0.26
UPF1-208ENST00000600012 C16orf71Q8IYS4 520 aaPredicted RBP16.7■□□□□ 0.26
UPF1-208ENST00000600012 GAS2L2Q8NHY3 880 aa16.7■□□□□ 0.26
UPF1-208ENST00000600012 BCL2L12Q9HB09 334 aa16.7■□□□□ 0.26
UPF1-208ENST00000600012 WDR90Q96KV7 1748 aa16.7■□□□□ 0.26
UPF1-208ENST00000600012 SCN7AQ01118 1682 aa16.69■□□□□ 0.26
UPF1-208ENST00000600012 GNAT3A8MTJ3 354 aa16.69■□□□□ 0.26
UPF1-208ENST00000600012 U2SURPO15042 1029 aaKnown RBP16.69■□□□□ 0.26
UPF1-208ENST00000600012 ZC3H4Q9UPT8 1303 aaKnown RBP16.69■□□□□ 0.26
UPF1-208ENST00000600012 HEG1Q9ULI3 1381 aa16.68■□□□□ 0.26
UPF1-208ENST00000600012 CCDC88AQ3V6T2 1871 aa16.68■□□□□ 0.26
UPF1-208ENST00000600012 A0A087WZG4 1122 aa16.68■□□□□ 0.26
UPF1-208ENST00000600012 EIF5P55010 431 aaKnown RBP16.68■□□□□ 0.26
UPF1-208ENST00000600012 TEX13AQ9BXU3 409 aaPredicted RBP16.68■□□□□ 0.26
UPF1-208ENST00000600012 U2AF1L5P0DN76 240 aaPredicted RBP16.67■□□□□ 0.26
UPF1-208ENST00000600012 U2AF1Q01081 240 aaKnown RBP eCLIP16.67■□□□□ 0.26
UPF1-208ENST00000600012 FSTL1Q12841 308 aa16.67■□□□□ 0.26
UPF1-208ENST00000600012 ZNF790Q6PG37 636 aa16.67■□□□□ 0.26
UPF1-208ENST00000600012 CCDC146Q8IYE0 955 aa16.67■□□□□ 0.26
UPF1-208ENST00000600012 TTLL6Q8N841 843 aa16.67■□□□□ 0.26
UPF1-208ENST00000600012 IL17REQ8NFR9 667 aa16.67■□□□□ 0.26
UPF1-208ENST00000600012 ZNF496Q96IT1 587 aaPredicted RBP16.67■□□□□ 0.26
UPF1-208ENST00000600012 NUDCQ9Y266 331 aa16.67■□□□□ 0.26
UPF1-208ENST00000600012 ANKRD31Q8N7Z5 1873 aa16.67■□□□□ 0.26
UPF1-208ENST00000600012 CARMIL3Q8ND23 1372 aa16.65■□□□□ 0.26
UPF1-208ENST00000600012 TIAM2Q8IVF5 1701 aa16.65■□□□□ 0.26
UPF1-208ENST00000600012 H0YIN7 160 aa16.65■□□□□ 0.26
UPF1-208ENST00000600012 LMNB1P20700 586 aa16.65■□□□□ 0.26
UPF1-208ENST00000600012 RASSF7Q02833 373 aa16.65■□□□□ 0.26
UPF1-208ENST00000600012 C2CD5Q86YS7 1000 aa16.65■□□□□ 0.26
UPF1-208ENST00000600012 DNAJC5GQ8N7S2 189 aa16.65■□□□□ 0.26
UPF1-208ENST00000600012 CEMIPQ8WUJ3 1361 aa16.64■□□□□ 0.26
UPF1-208ENST00000600012 IL6STP40189 918 aaPredicted RBP16.64■□□□□ 0.25
UPF1-208ENST00000600012 BICDL1Q6ZP65 573 aa16.64■□□□□ 0.25
UPF1-208ENST00000600012 FMNL2Q96PY5 1086 aa16.64■□□□□ 0.25
UPF1-208ENST00000600012 RRAGCQ9HB90 399 aa16.64■□□□□ 0.25
UPF1-208ENST00000600012 PDZRN3Q9UPQ7 1066 aa16.64■□□□□ 0.25
UPF1-208ENST00000600012 TBC1D9BQ66K14 1250 aa16.63■□□□□ 0.25
UPF1-208ENST00000600012 ZNF330Q9Y3S2 320 aaPredicted RBP16.63■□□□□ 0.25
UPF1-208ENST00000600012 COL11A2P13942 1736 aaPredicted RBP16.62■□□□□ 0.25
UPF1-208ENST00000600012 BCORQ6W2J9 1755 aa16.62■□□□□ 0.25
UPF1-208ENST00000600012 NPM2Q86SE8 214 aaKnown RBP16.62■□□□□ 0.25
UPF1-208ENST00000600012 DICER1Q9UPY3 1922 aaKnown RBP16.62■□□□□ 0.25
UPF1-208ENST00000600012 DLG5Q8TDM6 1919 aa16.61■□□□□ 0.25
UPF1-208ENST00000600012 PRKAR2BP31323 418 aa16.61■□□□□ 0.25
UPF1-208ENST00000600012 PDE6BP35913 854 aa16.61■□□□□ 0.25
UPF1-208ENST00000600012 SMC1BQ8NDV3 1235 aa16.61■□□□□ 0.25
UPF1-208ENST00000600012 BRIP1Q9BX63 1249 aa16.61■□□□□ 0.25
UPF1-208ENST00000600012 TBC1D2BQ9UPU7 963 aa16.61■□□□□ 0.25
UPF1-208ENST00000600012 SALL2Q9Y467 1007 aaPredicted RBP16.61■□□□□ 0.25
UPF1-208ENST00000600012 ZBED9Q6R2W3 1325 aa16.61■□□□□ 0.25
UPF1-208ENST00000600012 FER1L6Q2WGJ9 1857 aa16.61■□□□□ 0.25
UPF1-208ENST00000600012 GLTPD2A6NH11 291 aa16.6■□□□□ 0.25
UPF1-208ENST00000600012 BTBD11A6QL63 1104 aa16.6■□□□□ 0.25
UPF1-208ENST00000600012 NFKBIEO00221 500 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms