RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 DDR1Q08345 913 aa16.18■□□□□ 0.18
LIG1-217ENST00000599165 TTC5Q8N0Z6 440 aa16.18■□□□□ 0.18
LIG1-217ENST00000599165 NLGN1Q8N2Q7 840 aa16.18■□□□□ 0.18
LIG1-217ENST00000599165 BCL2L12Q9HB09 334 aa16.18■□□□□ 0.18
LIG1-217ENST00000599165 SCN7AQ01118 1682 aa16.18■□□□□ 0.18
LIG1-217ENST00000599165 NRXN2Q9P2S2 1712 aa16.17■□□□□ 0.18
LIG1-217ENST00000599165 PRAMEF22A3QJZ6 481 aa16.17■□□□□ 0.18
LIG1-217ENST00000599165 BTBD11A6QL63 1104 aa16.17■□□□□ 0.18
LIG1-217ENST00000599165 YY1P25490 414 aa16.17■□□□□ 0.18
LIG1-217ENST00000599165 DCAF8L1A6NGE4 600 aa16.16■□□□□ 0.18
LIG1-217ENST00000599165 EIF5P55010 431 aaKnown RBP16.16■□□□□ 0.18
LIG1-217ENST00000599165 PRKRIP1Q9H875 184 aaPredicted RBP16.16■□□□□ 0.18
LIG1-217ENST00000599165 LAMB4A4D0S4 1761 aa16.15■□□□□ 0.18
LIG1-217ENST00000599165 TM4SF1P30408 202 aa16.15■□□□□ 0.18
LIG1-217ENST00000599165 NFE2L2Q16236 605 aa16.15■□□□□ 0.18
LIG1-217ENST00000599165 GPR162Q16538 588 aa16.15■□□□□ 0.18
LIG1-217ENST00000599165 USPL1Q5W0Q7 1092 aa16.15■□□□□ 0.18
LIG1-217ENST00000599165 RTF1Q92541 710 aaKnown RBP16.15■□□□□ 0.18
LIG1-217ENST00000599165 FMNL2Q96PY5 1086 aa16.15■□□□□ 0.18
LIG1-217ENST00000599165 THUMPD2Q9BTF0 503 aaKnown RBP16.15■□□□□ 0.18
LIG1-217ENST00000599165 BCORQ6W2J9 1755 aa16.15■□□□□ 0.18
LIG1-217ENST00000599165 CANXP27824 592 aaKnown RBP16.14■□□□□ 0.17
LIG1-217ENST00000599165 NARFQ9UHQ1 456 aa16.14■□□□□ 0.17
LIG1-217ENST00000599165 USP16Q9Y5T5 823 aa16.14■□□□□ 0.17
LIG1-217ENST00000599165 POLRMTO00411 1230 aaKnown RBP16.13■□□□□ 0.17
LIG1-217ENST00000599165 A1BGP04217 495 aa16.13■□□□□ 0.17
LIG1-217ENST00000599165 ZEB1P37275 1124 aaPredicted RBP16.13■□□□□ 0.17
LIG1-217ENST00000599165 PELP1Q8IZL8 1130 aaKnown RBP16.13■□□□□ 0.17
LIG1-217ENST00000599165 MIS18AQ9NYP9 233 aa16.13■□□□□ 0.17
LIG1-217ENST00000599165 STARD3NLO95772 234 aa16.12■□□□□ 0.17
LIG1-217ENST00000599165 TAF7Q15545 349 aaPredicted RBP16.12■□□□□ 0.17
LIG1-217ENST00000599165 WWC3Q9ULE0 1092 aa16.12■□□□□ 0.17
LIG1-217ENST00000599165 PIP4K2AP48426 406 aaPredicted RBP16.11■□□□□ 0.17
LIG1-217ENST00000599165 NFIXQ14938 502 aa16.11■□□□□ 0.17
LIG1-217ENST00000599165 TEX13AQ9BXU3 409 aaPredicted RBP16.11■□□□□ 0.17
LIG1-217ENST00000599165 KCNA3P22001 575 aa16.1■□□□□ 0.17
LIG1-217ENST00000599165 PARP3Q9Y6F1 533 aa16.1■□□□□ 0.17
LIG1-217ENST00000599165 ANKRD31Q8N7Z5 1873 aa16.1■□□□□ 0.17
LIG1-217ENST00000599165 DLEC1Q9Y238 1755 aa16.09■□□□□ 0.17
LIG1-217ENST00000599165 NBPF26B4DH59 902 aa16.09■□□□□ 0.17
LIG1-217ENST00000599165 ZPR1O75312 459 aa16.09■□□□□ 0.17
LIG1-217ENST00000599165 IL6STP40189 918 aaPredicted RBP16.09■□□□□ 0.17
LIG1-217ENST00000599165 TMPOP42166 694 aaKnown RBP16.09■□□□□ 0.17
LIG1-217ENST00000599165 NBPF10Q6P3W6 841 aaKnown RBP16.09■□□□□ 0.17
LIG1-217ENST00000599165 CCDC146Q8IYE0 955 aa16.09■□□□□ 0.17
LIG1-217ENST00000599165 NBPF15Q8N660 670 aa16.09■□□□□ 0.17
LIG1-217ENST00000599165 MAPK8IP3Q9UPT6 1336 aa16.09■□□□□ 0.17
LIG1-217ENST00000599165 ARFGEF1Q9Y6D6 1849 aa16.08■□□□□ 0.17
LIG1-217ENST00000599165 A0A0G2JLW4 131 aa16.08■□□□□ 0.16
LIG1-217ENST00000599165 SNRPA1P09661 255 aaKnown RBP16.08■□□□□ 0.16
LIG1-217ENST00000599165 DPEP1P16444 411 aa16.08■□□□□ 0.16
LIG1-217ENST00000599165 TGFB2P61812 414 aa16.08■□□□□ 0.16
LIG1-217ENST00000599165 ADAMTS8Q9UP79 889 aa16.08■□□□□ 0.16
LIG1-217ENST00000599165 TBC1D2BQ9UPU7 963 aa16.08■□□□□ 0.16
LIG1-217ENST00000599165 CARMIL3Q8ND23 1372 aa16.08■□□□□ 0.16
LIG1-217ENST00000599165 GRIN3BO60391 1043 aa16.07■□□□□ 0.16
LIG1-217ENST00000599165 CAMTA2O94983 1202 aa16.07■□□□□ 0.16
LIG1-217ENST00000599165 EIF4A1P60842 406 aaKnown RBP16.07■□□□□ 0.16
LIG1-217ENST00000599165 CCDC184Q52MB2 194 aa16.07■□□□□ 0.16
LIG1-217ENST00000599165 ZNF784Q8NCA9 323 aaPredicted RBP16.07■□□□□ 0.16
LIG1-217ENST00000599165 PNNQ9H307 717 aaKnown RBP16.07■□□□□ 0.16
LIG1-217ENST00000599165 RRP7AQ9Y3A4 280 aaKnown RBP16.07■□□□□ 0.16
LIG1-217ENST00000599165 NEFMP07197 916 aa16.06■□□□□ 0.16
LIG1-217ENST00000599165 RIPK4P57078 832 aa16.06■□□□□ 0.16
LIG1-217ENST00000599165 TBC1D9BQ66K14 1250 aa16.06■□□□□ 0.16
LIG1-217ENST00000599165 A0A087WZG4 1122 aa16.05■□□□□ 0.16
LIG1-217ENST00000599165 GIGYF1O75420 1035 aaPredicted RBP16.05■□□□□ 0.16
LIG1-217ENST00000599165 TRIM35Q9UPQ4 493 aa16.05■□□□□ 0.16
LIG1-217ENST00000599165 COL11A2P13942 1736 aaPredicted RBP16.05■□□□□ 0.16
LIG1-217ENST00000599165 ADCY9O60503 1353 aa16.04■□□□□ 0.16
LIG1-217ENST00000599165 SERPINB2P05120 415 aa16.04■□□□□ 0.16
LIG1-217ENST00000599165 CHRNA5P30532 468 aa16.04■□□□□ 0.16
LIG1-217ENST00000599165 PNISRQ8TF01 805 aaKnown RBP16.04■□□□□ 0.16
LIG1-217ENST00000599165 ZNF330Q9Y3S2 320 aaPredicted RBP16.04■□□□□ 0.16
LIG1-217ENST00000599165 ZNF316A6NFI3 1004 aaPredicted RBP16.03■□□□□ 0.16
LIG1-217ENST00000599165 RUNDC1Q96C34 613 aa16.03■□□□□ 0.16
LIG1-217ENST00000599165 WDR43Q15061 677 aaKnown RBP eCLIP16.02■□□□□ 0.16
LIG1-217ENST00000599165 BICDL1Q6ZP65 573 aa16.02■□□□□ 0.16
LIG1-217ENST00000599165 DZIP3Q86Y13 1208 aaKnown RBP16.02■□□□□ 0.16
LIG1-217ENST00000599165 NUP98P52948 1817 aa16.02■□□□□ 0.16
LIG1-217ENST00000599165 NEUROD2Q15784 382 aa16■□□□□ 0.15
LIG1-217ENST00000599165 LRP10Q7Z4F1 713 aa16■□□□□ 0.15
LIG1-217ENST00000599165 BCS1LQ9Y276 419 aa16■□□□□ 0.15
LIG1-217ENST00000599165 SBF1O95248 1867 aa15.99■□□□□ 0.15
LIG1-217ENST00000599165 PRR5LQ6MZQ0 368 aa15.99■□□□□ 0.15
LIG1-217ENST00000599165 CCDC24Q8N4L8 307 aa15.99■□□□□ 0.15
LIG1-217ENST00000599165 TSPYL4Q9UJ04 414 aa15.99■□□□□ 0.15
LIG1-217ENST00000599165 CHL1O00533 1208 aa15.98■□□□□ 0.15
LIG1-217ENST00000599165 LMOD3Q0VAK6 560 aa15.98■□□□□ 0.15
LIG1-217ENST00000599165 PDIA6Q15084 440 aa15.98■□□□□ 0.15
LIG1-217ENST00000599165 HLFQ16534 295 aa15.98■□□□□ 0.15
LIG1-217ENST00000599165 KRT24Q2M2I5 525 aa15.98■□□□□ 0.15
LIG1-217ENST00000599165 BABAM1Q9NWV8 329 aa15.98■□□□□ 0.15
LIG1-217ENST00000599165 PIM2Q9P1W9 311 aa15.98■□□□□ 0.15
LIG1-217ENST00000599165 ATP10DQ9P241 1426 aa15.98■□□□□ 0.15
LIG1-217ENST00000599165 APAF1O14727 1248 aa15.96■□□□□ 0.15
LIG1-217ENST00000599165 RGL2O15211 777 aa15.96■□□□□ 0.15
LIG1-217ENST00000599165 PROSER3Q2NL68 480 aa15.96■□□□□ 0.15
LIG1-217ENST00000599165 CLEC4GQ6UXB4 293 aa15.96■□□□□ 0.15
LIG1-217ENST00000599165 TTLL7Q6ZT98 887 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms