RNA–Protein interactions for RNA: ENST00000598309.1

USHBP1-208, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-208ENST00000598309 KCNQ3O43525 872 aa22.02■■□□□ 1.12
USHBP1-208ENST00000598309 TAF7Q15545 349 aaPredicted RBP22.02■■□□□ 1.12
USHBP1-208ENST00000598309 WDR43Q15061 677 aaKnown RBP eCLIP22.01■■□□□ 1.11
USHBP1-208ENST00000598309 PNISRQ8TF01 805 aaKnown RBP22.01■■□□□ 1.11
USHBP1-208ENST00000598309 SRP68Q9UHB9 627 aaKnown RBP22.01■■□□□ 1.11
USHBP1-208ENST00000598309 ZPR1O75312 459 aa22■■□□□ 1.11
USHBP1-208ENST00000598309 EIF5P55010 431 aaKnown RBP21.99■■□□□ 1.11
USHBP1-208ENST00000598309 GPR162Q16538 588 aa21.99■■□□□ 1.11
USHBP1-208ENST00000598309 NARFQ9UHQ1 456 aa21.99■■□□□ 1.11
USHBP1-208ENST00000598309 C10orf71Q711Q0 1435 aa21.98■■□□□ 1.11
USHBP1-208ENST00000598309 A0A087WZG4 1122 aa21.98■■□□□ 1.11
USHBP1-208ENST00000598309 SNRPA1P09661 255 aaKnown RBP21.98■■□□□ 1.11
USHBP1-208ENST00000598309 CANXP27824 592 aaKnown RBP21.98■■□□□ 1.11
USHBP1-208ENST00000598309 FKBP8Q14318 412 aa21.98■■□□□ 1.11
USHBP1-208ENST00000598309 PARP3Q9Y6F1 533 aa21.98■■□□□ 1.11
USHBP1-208ENST00000598309 IL6STP40189 918 aaPredicted RBP21.97■■□□□ 1.11
USHBP1-208ENST00000598309 LMOD3Q0VAK6 560 aa21.97■■□□□ 1.11
USHBP1-208ENST00000598309 TMPOP42166 694 aaKnown RBP21.96■■□□□ 1.11
USHBP1-208ENST00000598309 RIPK4P57078 832 aa21.96■■□□□ 1.11
USHBP1-208ENST00000598309 USPL1Q5W0Q7 1092 aa21.96■■□□□ 1.11
USHBP1-208ENST00000598309 RUNDC1Q96C34 613 aa21.96■■□□□ 1.11
USHBP1-208ENST00000598309 KDM3BQ7LBC6 1761 aa21.96■■□□□ 1.11
USHBP1-208ENST00000598309 KIF13BQ9NQT8 1826 aa21.95■■□□□ 1.1
USHBP1-208ENST00000598309 THUMPD2Q9BTF0 503 aaKnown RBP21.95■■□□□ 1.1
USHBP1-208ENST00000598309 ADAMTS8Q9UP79 889 aa21.95■■□□□ 1.1
USHBP1-208ENST00000598309 YY1P25490 414 aa21.94■■□□□ 1.1
USHBP1-208ENST00000598309 DDR1Q08345 913 aa21.94■■□□□ 1.1
USHBP1-208ENST00000598309 A1BGP04217 495 aa21.93■■□□□ 1.1
USHBP1-208ENST00000598309 TM4SF1P30408 202 aa21.93■■□□□ 1.1
USHBP1-208ENST00000598309 CCDC146Q8IYE0 955 aa21.93■■□□□ 1.1
USHBP1-208ENST00000598309 PELP1Q8IZL8 1130 aaKnown RBP21.93■■□□□ 1.1
USHBP1-208ENST00000598309 MIS18AQ9NYP9 233 aa21.93■■□□□ 1.1
USHBP1-208ENST00000598309 USP16Q9Y5T5 823 aa21.93■■□□□ 1.1
USHBP1-208ENST00000598309 PXDNLA1KZ92 1463 aa21.92■■□□□ 1.1
USHBP1-208ENST00000598309 GRIN3BO60391 1043 aa21.92■■□□□ 1.1
USHBP1-208ENST00000598309 YBX3P16989 372 aaKnown RBP eCLIP21.92■■□□□ 1.1
USHBP1-208ENST00000598309 TGFB2P61812 414 aa21.92■■□□□ 1.1
USHBP1-208ENST00000598309 BCL2L12Q9HB09 334 aa21.92■■□□□ 1.1
USHBP1-208ENST00000598309 SCN7AQ01118 1682 aa21.91■■□□□ 1.1
USHBP1-208ENST00000598309 PRAMEF22A3QJZ6 481 aa21.91■■□□□ 1.1
USHBP1-208ENST00000598309 POLRMTO00411 1230 aaKnown RBP21.91■■□□□ 1.1
USHBP1-208ENST00000598309 NPM2Q86SE8 214 aaKnown RBP21.91■■□□□ 1.1
USHBP1-208ENST00000598309 BABAM1Q9NWV8 329 aa21.91■■□□□ 1.1
USHBP1-208ENST00000598309 LAMB4A4D0S4 1761 aa21.9■■□□□ 1.1
USHBP1-208ENST00000598309 EIF4A1P60842 406 aaKnown RBP21.9■■□□□ 1.1
USHBP1-208ENST00000598309 NFIXQ14938 502 aa21.9■■□□□ 1.1
USHBP1-208ENST00000598309 KIAA1551Q9HCM1 1747 aa21.89■■□□□ 1.1
USHBP1-208ENST00000598309 ZNF330Q9Y3S2 320 aaPredicted RBP21.89■■□□□ 1.09
USHBP1-208ENST00000598309 GIGYF1O75420 1035 aaPredicted RBP21.88■■□□□ 1.09
USHBP1-208ENST00000598309 RRP7AQ9Y3A4 280 aaKnown RBP21.88■■□□□ 1.09
USHBP1-208ENST00000598309 TSPYL4Q9UJ04 414 aa21.87■■□□□ 1.09
USHBP1-208ENST00000598309 CHD4Q14839 1912 aa21.86■■□□□ 1.09
USHBP1-208ENST00000598309 CAMTA2O94983 1202 aa21.86■■□□□ 1.09
USHBP1-208ENST00000598309 TRIM35Q9UPQ4 493 aa21.86■■□□□ 1.09
USHBP1-208ENST00000598309 TBC1D2BQ9UPU7 963 aa21.86■■□□□ 1.09
USHBP1-208ENST00000598309 NRXN2Q9P2S2 1712 aa21.86■■□□□ 1.09
USHBP1-208ENST00000598309 UTRNP46939 3433 aa21.85■■□□□ 1.09
USHBP1-208ENST00000598309 NBPF26B4DH59 902 aa21.85■■□□□ 1.09
USHBP1-208ENST00000598309 RGL2O15211 777 aa21.85■■□□□ 1.09
USHBP1-208ENST00000598309 ANP32CO43423 234 aa21.85■■□□□ 1.09
USHBP1-208ENST00000598309 NEUROD2Q15784 382 aa21.85■■□□□ 1.09
USHBP1-208ENST00000598309 NBPF10Q6P3W6 841 aaKnown RBP21.85■■□□□ 1.09
USHBP1-208ENST00000598309 DZIP3Q86Y13 1208 aaKnown RBP21.85■■□□□ 1.09
USHBP1-208ENST00000598309 NBPF15Q8N660 670 aa21.85■■□□□ 1.09
USHBP1-208ENST00000598309 BCORQ6W2J9 1755 aa21.84■■□□□ 1.09
USHBP1-208ENST00000598309 PIP4K2AP48426 406 aaPredicted RBP21.84■■□□□ 1.09
USHBP1-208ENST00000598309 SERPINB2P05120 415 aa21.83■■□□□ 1.09
USHBP1-208ENST00000598309 DPEP1P16444 411 aa21.83■■□□□ 1.09
USHBP1-208ENST00000598309 ERBB4Q15303 1308 aa21.82■■□□□ 1.08
USHBP1-208ENST00000598309 A0A0G2JLW4 131 aa21.82■■□□□ 1.08
USHBP1-208ENST00000598309 TBC1D9BQ66K14 1250 aa21.82■■□□□ 1.08
USHBP1-208ENST00000598309 CLEC4GQ6UXB4 293 aa21.82■■□□□ 1.08
USHBP1-208ENST00000598309 CARMIL3Q8ND23 1372 aa21.82■■□□□ 1.08
USHBP1-208ENST00000598309 N4BP2Q86UW6 1770 aaPredicted RBP21.82■■□□□ 1.08
USHBP1-208ENST00000598309 AFDNP55196 1824 aaKnown RBP21.81■■□□□ 1.08
USHBP1-208ENST00000598309 CHL1O00533 1208 aa21.81■■□□□ 1.08
USHBP1-208ENST00000598309 CCDC184Q52MB2 194 aa21.81■■□□□ 1.08
USHBP1-208ENST00000598309 ZNF652Q9Y2D9 606 aa21.81■■□□□ 1.08
USHBP1-208ENST00000598309 GOLGB1Q14789 3259 aaKnown RBP21.81■■□□□ 1.08
USHBP1-208ENST00000598309 BICDL1Q6ZP65 573 aa21.8■■□□□ 1.08
USHBP1-208ENST00000598309 BRCA1P38398 1863 aaKnown RBP21.79■■□□□ 1.08
USHBP1-208ENST00000598309 APAF1O14727 1248 aa21.79■■□□□ 1.08
USHBP1-208ENST00000598309 KCNA3P22001 575 aa21.79■■□□□ 1.08
USHBP1-208ENST00000598309 WWC3Q9ULE0 1092 aa21.79■■□□□ 1.08
USHBP1-208ENST00000598309 SETDB2Q96T68 719 aa21.78■■□□□ 1.08
USHBP1-208ENST00000598309 PIM2Q9P1W9 311 aa21.78■■□□□ 1.08
USHBP1-208ENST00000598309 MRS2Q9HD23 443 aa21.77■■□□□ 1.08
USHBP1-208ENST00000598309 BCS1LQ9Y276 419 aa21.77■■□□□ 1.08
USHBP1-208ENST00000598309 CALD1Q05682 793 aaKnown RBP21.76■■□□□ 1.07
USHBP1-208ENST00000598309 CFAP44Q96MT7 982 aa21.76■■□□□ 1.07
USHBP1-208ENST00000598309 CHRNA5P30532 468 aa21.75■■□□□ 1.07
USHBP1-208ENST00000598309 PRR5LQ6MZQ0 368 aa21.75■■□□□ 1.07
USHBP1-208ENST00000598309 ZNF784Q8NCA9 323 aaPredicted RBP21.75■■□□□ 1.07
USHBP1-208ENST00000598309 PDZRN3Q9UPQ7 1066 aa21.75■■□□□ 1.07
USHBP1-208ENST00000598309 ERVV-1B6SEH8 477 aa21.74■■□□□ 1.07
USHBP1-208ENST00000598309 DALRD3Q5D0E6 543 aaKnown RBP21.74■■□□□ 1.07
USHBP1-208ENST00000598309 CNBD1Q8NA66 436 aa21.74■■□□□ 1.07
USHBP1-208ENST00000598309 HOXB7P09629 217 aa21.73■■□□□ 1.07
USHBP1-208ENST00000598309 KIF6Q6ZMV9 814 aa21.73■■□□□ 1.07
USHBP1-208ENST00000598309 BRIP1Q9BX63 1249 aa21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms