RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 PCDH11XQ9BZA7 1347 aa15.94■□□□□ 0.14
SHKBP1-213ENST00000597325 PCDH11YQ9BZA8 1340 aa15.94■□□□□ 0.14
SHKBP1-213ENST00000597325 CYP27B1O15528 508 aa15.93■□□□□ 0.14
SHKBP1-213ENST00000597325 HSPA8P11142 646 aaKnown RBP15.93■□□□□ 0.14
SHKBP1-213ENST00000597325 GYS1P13807 737 aa15.93■□□□□ 0.14
SHKBP1-213ENST00000597325 RASSF7Q02833 373 aa15.93■□□□□ 0.14
SHKBP1-213ENST00000597325 PNNQ9H307 717 aaKnown RBP15.93■□□□□ 0.14
SHKBP1-213ENST00000597325 TIAM2Q8IVF5 1701 aa15.92■□□□□ 0.14
SHKBP1-213ENST00000597325 VEGFBP49765 207 aa15.92■□□□□ 0.14
SHKBP1-213ENST00000597325 PDE4DIPQ5VU43 2346 aa15.92■□□□□ 0.14
SHKBP1-213ENST00000597325 CCDC85CA6NKD9 419 aa15.91■□□□□ 0.14
SHKBP1-213ENST00000597325 NEFMP07197 916 aa15.91■□□□□ 0.14
SHKBP1-213ENST00000597325 PARP3Q9Y6F1 533 aa15.91■□□□□ 0.14
SHKBP1-213ENST00000597325 MAPK8IP3Q9UPT6 1336 aa15.91■□□□□ 0.14
SHKBP1-213ENST00000597325 HMOX1P09601 288 aa15.9■□□□□ 0.14
SHKBP1-213ENST00000597325 LMNB1P20700 586 aa15.9■□□□□ 0.14
SHKBP1-213ENST00000597325 TRAPPC3LQ5T215 181 aa15.9■□□□□ 0.14
SHKBP1-213ENST00000597325 USHBP1Q8N6Y0 703 aa15.9■□□□□ 0.14
SHKBP1-213ENST00000597325 YTHDC1Q96MU7 727 aaKnown RBP15.9■□□□□ 0.14
SHKBP1-213ENST00000597325 EYA1Q99502 592 aa15.9■□□□□ 0.14
SHKBP1-213ENST00000597325 SULT6B1Q6IMI4 303 aa15.89■□□□□ 0.13
SHKBP1-213ENST00000597325 CHADLQ6NUI6 762 aa15.89■□□□□ 0.13
SHKBP1-213ENST00000597325 CCDC146Q8IYE0 955 aa15.89■□□□□ 0.13
SHKBP1-213ENST00000597325 RAPGEF4Q8WZA2 1011 aa15.89■□□□□ 0.13
SHKBP1-213ENST00000597325 ARHGEF1Q92888 912 aaKnown RBP15.89■□□□□ 0.13
SHKBP1-213ENST00000597325 PASKQ96RG2 1323 aa15.89■□□□□ 0.13
SHKBP1-213ENST00000597325 CCDC88AQ3V6T2 1871 aa15.88■□□□□ 0.13
SHKBP1-213ENST00000597325 POTEIP0CG38 1075 aa15.88■□□□□ 0.13
SHKBP1-213ENST00000597325 POTEJP0CG39 1038 aa15.88■□□□□ 0.13
SHKBP1-213ENST00000597325 TATP17735 454 aaPredicted RBP15.88■□□□□ 0.13
SHKBP1-213ENST00000597325 CHRNA5P30532 468 aa15.88■□□□□ 0.13
SHKBP1-213ENST00000597325 ATP6V1AP38606 617 aa15.88■□□□□ 0.13
SHKBP1-213ENST00000597325 RUNDC1Q96C34 613 aa15.88■□□□□ 0.13
SHKBP1-213ENST00000597325 RSPH6AQ9H0K4 717 aa15.88■□□□□ 0.13
SHKBP1-213ENST00000597325 RTCBQ9Y3I0 505 aaKnown RBP15.88■□□□□ 0.13
SHKBP1-213ENST00000597325 KDRP35968 1356 aa15.87■□□□□ 0.13
SHKBP1-213ENST00000597325 PRKAR2BP31323 418 aa15.87■□□□□ 0.13
SHKBP1-213ENST00000597325 ASAP1Q9ULH1 1129 aa15.87■□□□□ 0.13
SHKBP1-213ENST00000597325 NCAPD2Q15021 1401 aa15.86■□□□□ 0.13
SHKBP1-213ENST00000597325 ADRA2BP18089 450 aa15.86■□□□□ 0.13
SHKBP1-213ENST00000597325 HNRNPUQ00839 825 aaKnown RBP eCLIP15.86■□□□□ 0.13
SHKBP1-213ENST00000597325 NKX1-1Q15270 411 aaPredicted RBP15.86■□□□□ 0.13
SHKBP1-213ENST00000597325 AEBP1Q8IUX7 1158 aa15.86■□□□□ 0.13
SHKBP1-213ENST00000597325 ZNF831Q5JPB2 1677 aa15.84■□□□□ 0.13
SHKBP1-213ENST00000597325 DDR1Q08345 913 aa15.84■□□□□ 0.13
SHKBP1-213ENST00000597325 COL5A3P25940 1745 aaPredicted RBP15.84■□□□□ 0.13
SHKBP1-213ENST00000597325 RC3H1Q5TC82 1133 aaKnown RBP15.83■□□□□ 0.12
SHKBP1-213ENST00000597325 SLC4A9Q96Q91 983 aa15.83■□□□□ 0.12
SHKBP1-213ENST00000597325 PLEKHF1Q96S99 279 aa15.83■□□□□ 0.12
SHKBP1-213ENST00000597325 RFC4P35249 363 aa15.82■□□□□ 0.12
SHKBP1-213ENST00000597325 MYH14Q7Z406 1995 aaKnown RBP15.82■□□□□ 0.12
SHKBP1-213ENST00000597325 TMEM88BA6NKF7 163 aa15.81■□□□□ 0.12
SHKBP1-213ENST00000597325 NFKBIEO00221 500 aa15.81■□□□□ 0.12
SHKBP1-213ENST00000597325 APAF1O14727 1248 aa15.81■□□□□ 0.12
SHKBP1-213ENST00000597325 DPY19L2Q6NUT2 758 aa15.81■□□□□ 0.12
SHKBP1-213ENST00000597325 ATG3Q9NT62 314 aa15.81■□□□□ 0.12
SHKBP1-213ENST00000597325 DICER1Q9UPY3 1922 aaKnown RBP15.8■□□□□ 0.12
SHKBP1-213ENST00000597325 CNTNAP4Q9C0A0 1308 aa15.8■□□□□ 0.12
SHKBP1-213ENST00000597325 RASSF10A6NK89 507 aa15.8■□□□□ 0.12
SHKBP1-213ENST00000597325 RPS6KA4O75676 772 aa15.8■□□□□ 0.12
SHKBP1-213ENST00000597325 MAP2K1Q02750 393 aaPredicted RBP15.8■□□□□ 0.12
SHKBP1-213ENST00000597325 NGEFQ8N5V2 710 aa15.8■□□□□ 0.12
SHKBP1-213ENST00000597325 TMOD3Q9NYL9 352 aa15.8■□□□□ 0.12
SHKBP1-213ENST00000597325 DLEC1Q9Y238 1755 aa15.8■□□□□ 0.12
SHKBP1-213ENST00000597325 ITGBL1O95965 494 aaPredicted RBP15.79■□□□□ 0.12
SHKBP1-213ENST00000597325 FKBP8Q14318 412 aa15.79■□□□□ 0.12
SHKBP1-213ENST00000597325 THSD7BQ9C0I4 1608 aa15.79■□□□□ 0.12
SHKBP1-213ENST00000597325 POLRMTO00411 1230 aaKnown RBP15.78■□□□□ 0.12
SHKBP1-213ENST00000597325 NFE2L2Q16236 605 aa15.78■□□□□ 0.12
SHKBP1-213ENST00000597325 GAS2L2Q8NHY3 880 aa15.78■□□□□ 0.12
SHKBP1-213ENST00000597325 PHACTR3Q96KR7 559 aa15.78■□□□□ 0.12
SHKBP1-213ENST00000597325 ZBED9Q6R2W3 1325 aa15.77■□□□□ 0.12
SHKBP1-213ENST00000597325 WDR33Q9C0J8 1336 aaKnown RBP15.77■□□□□ 0.12
SHKBP1-213ENST00000597325 TMPOP42166 694 aaKnown RBP15.77■□□□□ 0.12
SHKBP1-213ENST00000597325 LMOD3Q0VAK6 560 aa15.77■□□□□ 0.12
SHKBP1-213ENST00000597325 NEUROD2Q15784 382 aa15.77■□□□□ 0.12
SHKBP1-213ENST00000597325 AMOTQ4VCS5 1084 aa15.77■□□□□ 0.12
SHKBP1-213ENST00000597325 PLEKHO1Q53GL0 409 aaPredicted RBP15.77■□□□□ 0.12
SHKBP1-213ENST00000597325 RRP7AQ9Y3A4 280 aaKnown RBP15.77■□□□□ 0.12
SHKBP1-213ENST00000597325 SALL2Q9Y467 1007 aaPredicted RBP15.77■□□□□ 0.12
SHKBP1-213ENST00000597325 USP42Q9H9J4 1324 aaKnown RBP15.76■□□□□ 0.11
SHKBP1-213ENST00000597325 TM4SF1P30408 202 aa15.76■□□□□ 0.11
SHKBP1-213ENST00000597325 DEFB115Q30KQ5 88 aa15.76■□□□□ 0.11
SHKBP1-213ENST00000597325 LDHDQ86WU2 507 aa15.76■□□□□ 0.11
SHKBP1-213ENST00000597325 SRP68Q9UHB9 627 aaKnown RBP15.76■□□□□ 0.11
SHKBP1-213ENST00000597325 SPG7Q9UQ90 795 aa15.76■□□□□ 0.11
SHKBP1-213ENST00000597325 RIPK4P57078 832 aa15.75■□□□□ 0.11
SHKBP1-213ENST00000597325 ADAMTS7Q9UKP4 1686 aa15.75■□□□□ 0.11
SHKBP1-213ENST00000597325 NRXN2Q9P2S2 1712 aa15.74■□□□□ 0.11
SHKBP1-213ENST00000597325 AFDNP55196 1824 aaKnown RBP15.74■□□□□ 0.11
SHKBP1-213ENST00000597325 MTHFSDQ2M296 383 aaKnown RBP15.74■□□□□ 0.11
SHKBP1-213ENST00000597325 NCBP3Q53F19 620 aaKnown RBP15.74■□□□□ 0.11
SHKBP1-213ENST00000597325 C1orf141Q5JVX7 400 aa15.74■□□□□ 0.11
SHKBP1-213ENST00000597325 ZNF530Q6P9A1 599 aaPredicted RBP15.74■□□□□ 0.11
SHKBP1-213ENST00000597325 DLG5Q8TDM6 1919 aa15.74■□□□□ 0.11
SHKBP1-213ENST00000597325 FER1L6Q2WGJ9 1857 aa15.74■□□□□ 0.11
SHKBP1-213ENST00000597325 ADAMTSL1Q8N6G6 1762 aa15.73■□□□□ 0.11
SHKBP1-213ENST00000597325 DDNO94850 711 aaPredicted RBP15.73■□□□□ 0.11
SHKBP1-213ENST00000597325 ERFEQ4G0M1 354 aa15.73■□□□□ 0.11
SHKBP1-213ENST00000597325 TTLL6Q8N841 843 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms