RNA–Protein interactions for RNA: ENST00000593827.1

COPE-204, Transcript of coatomer protein complex subunit epsilon, humanhuman

TSL 3

Gene COPE, Length 601 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPE-204ENST00000593827 ZBTB1Q9Y2K1 713 aa26.44■■□□□ 1.82
COPE-204ENST00000593827 PARP3Q9Y6F1 533 aa26.44■■□□□ 1.82
COPE-204ENST00000593827 VIRMAQ69YN4 1812 aaKnown RBP26.44■■□□□ 1.82
COPE-204ENST00000593827 SNRPA1P09661 255 aaKnown RBP26.43■■□□□ 1.82
COPE-204ENST00000593827 COL15A1P39059 1388 aa26.42■■□□□ 1.82
COPE-204ENST00000593827 UBR2Q8IWV8 1755 aa26.41■■□□□ 1.82
COPE-204ENST00000593827 CANXP27824 592 aaKnown RBP26.41■■□□□ 1.82
COPE-204ENST00000593827 NLGN2Q8NFZ4 835 aa26.41■■□□□ 1.82
COPE-204ENST00000593827 RIPK4P57078 832 aa26.4■■□□□ 1.82
COPE-204ENST00000593827 PELP1Q8IZL8 1130 aaKnown RBP26.4■■□□□ 1.82
COPE-204ENST00000593827 RUNDC1Q96C34 613 aa26.4■■□□□ 1.82
COPE-204ENST00000593827 NARFQ9UHQ1 456 aa26.4■■□□□ 1.82
COPE-204ENST00000593827 SIPA1L3O60292 1781 aaPredicted RBP26.4■■□□□ 1.82
COPE-204ENST00000593827 MYH14Q7Z406 1995 aaKnown RBP26.39■■□□□ 1.82
COPE-204ENST00000593827 IL6STP40189 918 aaPredicted RBP26.39■■□□□ 1.82
COPE-204ENST00000593827 SRP68Q9UHB9 627 aaKnown RBP26.39■■□□□ 1.82
COPE-204ENST00000593827 KCNQ3O43525 872 aa26.38■■□□□ 1.81
COPE-204ENST00000593827 GRIN3BO60391 1043 aa26.38■■□□□ 1.81
COPE-204ENST00000593827 TMPOP42166 694 aaKnown RBP26.37■■□□□ 1.81
COPE-204ENST00000593827 EIF5P55010 431 aaKnown RBP26.37■■□□□ 1.81
COPE-204ENST00000593827 USPL1Q5W0Q7 1092 aa26.37■■□□□ 1.81
COPE-204ENST00000593827 FKBP8Q14318 412 aa26.36■■□□□ 1.81
COPE-204ENST00000593827 TGFB2P61812 414 aa26.35■■□□□ 1.81
COPE-204ENST00000593827 BABAM1Q9NWV8 329 aa26.35■■□□□ 1.81
COPE-204ENST00000593827 ADAMTS8Q9UP79 889 aa26.35■■□□□ 1.81
COPE-204ENST00000593827 ANP32CO43423 234 aa26.34■■□□□ 1.81
COPE-204ENST00000593827 ZNF330Q9Y3S2 320 aaPredicted RBP26.34■■□□□ 1.81
COPE-204ENST00000593827 CCDC146Q8IYE0 955 aa26.33■■□□□ 1.81
COPE-204ENST00000593827 A1BGP04217 495 aa26.32■■□□□ 1.8
COPE-204ENST00000593827 MIS18AQ9NYP9 233 aa26.32■■□□□ 1.8
COPE-204ENST00000593827 USP16Q9Y5T5 823 aa26.32■■□□□ 1.8
COPE-204ENST00000593827 C4AP0C0L4 1744 aa26.31■■□□□ 1.8
COPE-204ENST00000593827 TM4SF1P30408 202 aa26.31■■□□□ 1.8
COPE-204ENST00000593827 THUMPD2Q9BTF0 503 aaKnown RBP26.31■■□□□ 1.8
COPE-204ENST00000593827 TSPYL4Q9UJ04 414 aa26.3■■□□□ 1.8
COPE-204ENST00000593827 C10orf71Q711Q0 1435 aa26.3■■□□□ 1.8
COPE-204ENST00000593827 NEUROD2Q15784 382 aa26.29■■□□□ 1.8
COPE-204ENST00000593827 POLRMTO00411 1230 aaKnown RBP26.28■■□□□ 1.8
COPE-204ENST00000593827 EIF4A1P60842 406 aaKnown RBP26.28■■□□□ 1.8
COPE-204ENST00000593827 DDR1Q08345 913 aa26.27■■□□□ 1.8
COPE-204ENST00000593827 NFIXQ14938 502 aa26.27■■□□□ 1.8
COPE-204ENST00000593827 RRP7AQ9Y3A4 280 aaKnown RBP26.27■■□□□ 1.8
COPE-204ENST00000593827 GIGYF1O75420 1035 aaPredicted RBP26.26■■□□□ 1.79
COPE-204ENST00000593827 DZIP3Q86Y13 1208 aaKnown RBP26.26■■□□□ 1.79
COPE-204ENST00000593827 TBC1D2BQ9UPU7 963 aa26.26■■□□□ 1.79
COPE-204ENST00000593827 ZNF652Q9Y2D9 606 aa26.26■■□□□ 1.79
COPE-204ENST00000593827 YBX3P16989 372 aaKnown RBP eCLIP26.25■■□□□ 1.792e-8■□□□□ 10.7
COPE-204ENST00000593827 DLG5Q8TDM6 1919 aa26.24■■□□□ 1.79
COPE-204ENST00000593827 PRAMEF22A3QJZ6 481 aa26.24■■□□□ 1.79
COPE-204ENST00000593827 RGL2O15211 777 aa26.24■■□□□ 1.79
COPE-204ENST00000593827 CALD1Q05682 793 aaKnown RBP26.24■■□□□ 1.79
COPE-204ENST00000593827 BCL2L12Q9HB09 334 aa26.24■■□□□ 1.79
COPE-204ENST00000593827 SERPINB2P05120 415 aa26.23■■□□□ 1.79
COPE-204ENST00000593827 CLEC4GQ6UXB4 293 aa26.23■■□□□ 1.79
COPE-204ENST00000593827 PXDNLA1KZ92 1463 aa26.22■■□□□ 1.79
COPE-204ENST00000593827 ERBB4Q15303 1308 aa26.21■■□□□ 1.79
COPE-204ENST00000593827 A0A0G2JLW4 131 aa26.21■■□□□ 1.79
COPE-204ENST00000593827 CAMTA2O94983 1202 aa26.21■■□□□ 1.79
COPE-204ENST00000593827 SETDB2Q96T68 719 aa26.21■■□□□ 1.79
COPE-204ENST00000593827 BICDL1Q6ZP65 573 aa26.2■■□□□ 1.78
COPE-204ENST00000593827 TRIM35Q9UPQ4 493 aa26.2■■□□□ 1.78
COPE-204ENST00000593827 CARMIL3Q8ND23 1372 aa26.2■■□□□ 1.78
COPE-204ENST00000593827 NPHP1O15259 732 aa26.19■■□□□ 1.78
COPE-204ENST00000593827 DPEP1P16444 411 aa26.19■■□□□ 1.78
COPE-204ENST00000593827 PIM2Q9P1W9 311 aa26.19■■□□□ 1.78
COPE-204ENST00000593827 NBPF26B4DH59 902 aa26.18■■□□□ 1.78
COPE-204ENST00000593827 APAF1O14727 1248 aa26.18■■□□□ 1.78
COPE-204ENST00000593827 PIP4K2AP48426 406 aaPredicted RBP26.18■■□□□ 1.78
COPE-204ENST00000593827 TBC1D9BQ66K14 1250 aa26.18■■□□□ 1.78
COPE-204ENST00000593827 NBPF10Q6P3W6 841 aaKnown RBP26.18■■□□□ 1.78
COPE-204ENST00000593827 NBPF15Q8N660 670 aa26.18■■□□□ 1.78
COPE-204ENST00000593827 MRS2Q9HD23 443 aa26.18■■□□□ 1.78
COPE-204ENST00000593827 PDZRN3Q9UPQ7 1066 aa26.18■■□□□ 1.78
COPE-204ENST00000593827 KDM3BQ7LBC6 1761 aa26.18■■□□□ 1.78
COPE-204ENST00000593827 UTRNP46939 3433 aa26.17■■□□□ 1.78
COPE-204ENST00000593827 GOLGB1Q14789 3259 aaKnown RBP26.17■■□□□ 1.78
COPE-204ENST00000593827 CHL1O00533 1208 aa26.17■■□□□ 1.78
COPE-204ENST00000593827 BCS1LQ9Y276 419 aa26.17■■□□□ 1.78
COPE-204ENST00000593827 LAS1LQ9Y4W2 734 aaKnown RBP26.17■■□□□ 1.78
COPE-204ENST00000593827 KIF13BQ9NQT8 1826 aa26.16■■□□□ 1.78
COPE-204ENST00000593827 KIF6Q6ZMV9 814 aa26.15■■□□□ 1.78
COPE-204ENST00000593827 CFAP44Q96MT7 982 aa26.15■■□□□ 1.78
COPE-204ENST00000593827 DALRD3Q5D0E6 543 aaKnown RBP26.14■■□□□ 1.78
COPE-204ENST00000593827 WWC3Q9ULE0 1092 aa26.14■■□□□ 1.78
COPE-204ENST00000593827 SCN7AQ01118 1682 aa26.13■■□□□ 1.77
COPE-204ENST00000593827 ERVV-1B6SEH8 477 aa26.13■■□□□ 1.77
COPE-204ENST00000593827 ST5P78524 1137 aa26.13■■□□□ 1.77
COPE-204ENST00000593827 CNBD1Q8NA66 436 aa26.13■■□□□ 1.77
COPE-204ENST00000593827 H0YIN7 160 aa26.12■■□□□ 1.77
COPE-204ENST00000593827 HOXB7P09629 217 aa26.12■■□□□ 1.77
COPE-204ENST00000593827 PDE6BP35913 854 aa26.12■■□□□ 1.77
COPE-204ENST00000593827 BRIP1Q9BX63 1249 aa26.12■■□□□ 1.77
COPE-204ENST00000593827 LAMB4A4D0S4 1761 aa26.11■■□□□ 1.77
COPE-204ENST00000593827 MYL6BP14649 208 aa26.11■■□□□ 1.77
COPE-204ENST00000593827 EIF2S2P20042 333 aaKnown RBP26.11■■□□□ 1.77
COPE-204ENST00000593827 KCNA3P22001 575 aa26.11■■□□□ 1.77
COPE-204ENST00000593827 GNAI1P63096 354 aa26.11■■□□□ 1.77
COPE-204ENST00000593827 NGEFQ8N5V2 710 aa26.11■■□□□ 1.77
COPE-204ENST00000593827 NBPF5PQ86XG9 351 aaPredicted RBP26.1■■□□□ 1.77
COPE-204ENST00000593827 IFT57Q9NWB7 429 aa26.1■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms