RNA–Protein interactions for RNA: ENST00000592017.5

CLIP3-205, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 5

Gene CLIP3, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-205ENST00000592017 DCTN1Q14203 1278 aa18.43■□□□□ 0.54
CLIP3-205ENST00000592017 USPL1Q5W0Q7 1092 aa18.43■□□□□ 0.54
CLIP3-205ENST00000592017 PARP3Q9Y6F1 533 aa18.43■□□□□ 0.54
CLIP3-205ENST00000592017 CICQ96RK0 1608 aaPredicted RBP18.42■□□□□ 0.54
CLIP3-205ENST00000592017 BTBD11A6QL63 1104 aa18.42■□□□□ 0.54
CLIP3-205ENST00000592017 CANXP27824 592 aaKnown RBP18.42■□□□□ 0.54
CLIP3-205ENST00000592017 TM4SF1P30408 202 aa18.42■□□□□ 0.54
CLIP3-205ENST00000592017 HEG1Q9ULI3 1381 aa18.42■□□□□ 0.54
CLIP3-205ENST00000592017 A0A0G2JLW4 131 aa18.41■□□□□ 0.54
CLIP3-205ENST00000592017 ZPR1O75312 459 aa18.41■□□□□ 0.54
CLIP3-205ENST00000592017 TGFB2P61812 414 aa18.41■□□□□ 0.54
CLIP3-205ENST00000592017 NFE2L2Q16236 605 aa18.41■□□□□ 0.54
CLIP3-205ENST00000592017 CCDC146Q8IYE0 955 aa18.41■□□□□ 0.54
CLIP3-205ENST00000592017 FMNL2Q96PY5 1086 aa18.41■□□□□ 0.54
CLIP3-205ENST00000592017 BCL2L12Q9HB09 334 aa18.41■□□□□ 0.54
CLIP3-205ENST00000592017 NARFQ9UHQ1 456 aa18.41■□□□□ 0.54
CLIP3-205ENST00000592017 C10orf71Q711Q0 1435 aa18.4■□□□□ 0.54
CLIP3-205ENST00000592017 ANP32CO43423 234 aa18.4■□□□□ 0.54
CLIP3-205ENST00000592017 HTATSF1O43719 755 aaKnown RBP18.4■□□□□ 0.54
CLIP3-205ENST00000592017 EIF5P55010 431 aaKnown RBP18.4■□□□□ 0.54
CLIP3-205ENST00000592017 VIRMAQ69YN4 1812 aaKnown RBP18.39■□□□□ 0.54
CLIP3-205ENST00000592017 PXDNLA1KZ92 1463 aa18.39■□□□□ 0.54
CLIP3-205ENST00000592017 DPEP1P16444 411 aa18.39■□□□□ 0.53
CLIP3-205ENST00000592017 TEX13AQ9BXU3 409 aaPredicted RBP18.39■□□□□ 0.53
CLIP3-205ENST00000592017 COL15A1P39059 1388 aa18.39■□□□□ 0.53
CLIP3-205ENST00000592017 POLRMTO00411 1230 aaKnown RBP18.38■□□□□ 0.53
CLIP3-205ENST00000592017 A1BGP04217 495 aa18.38■□□□□ 0.53
CLIP3-205ENST00000592017 NFIXQ14938 502 aa18.38■□□□□ 0.53
CLIP3-205ENST00000592017 KCNA3P22001 575 aa18.37■□□□□ 0.53
CLIP3-205ENST00000592017 ADAMTS8Q9UP79 889 aa18.37■□□□□ 0.53
CLIP3-205ENST00000592017 PRAMEF22A3QJZ6 481 aa18.36■□□□□ 0.53
CLIP3-205ENST00000592017 C4AP0C0L4 1744 aa18.36■□□□□ 0.53
CLIP3-205ENST00000592017 THUMPD2Q9BTF0 503 aaKnown RBP18.36■□□□□ 0.53
CLIP3-205ENST00000592017 MIS18AQ9NYP9 233 aa18.36■□□□□ 0.53
CLIP3-205ENST00000592017 USP16Q9Y5T5 823 aa18.36■□□□□ 0.53
CLIP3-205ENST00000592017 TAF7Q15545 349 aaPredicted RBP18.35■□□□□ 0.53
CLIP3-205ENST00000592017 RRP7AQ9Y3A4 280 aaKnown RBP18.35■□□□□ 0.53
CLIP3-205ENST00000592017 SIPA1L3O60292 1781 aaPredicted RBP18.35■□□□□ 0.53
CLIP3-205ENST00000592017 UBR2Q8IWV8 1755 aa18.35■□□□□ 0.53
CLIP3-205ENST00000592017 A0A087WZG4 1122 aa18.34■□□□□ 0.53
CLIP3-205ENST00000592017 IL6STP40189 918 aaPredicted RBP18.34■□□□□ 0.53
CLIP3-205ENST00000592017 RIPK4P57078 832 aa18.34■□□□□ 0.53
CLIP3-205ENST00000592017 NEUROD2Q15784 382 aa18.34■□□□□ 0.53
CLIP3-205ENST00000592017 CCDC184Q52MB2 194 aa18.34■□□□□ 0.53
CLIP3-205ENST00000592017 RUNDC1Q96C34 613 aa18.34■□□□□ 0.53
CLIP3-205ENST00000592017 TBC1D2BQ9UPU7 963 aa18.34■□□□□ 0.53
CLIP3-205ENST00000592017 BCS1LQ9Y276 419 aa18.34■□□□□ 0.53
CLIP3-205ENST00000592017 SNRPA1P09661 255 aaKnown RBP18.33■□□□□ 0.52
CLIP3-205ENST00000592017 TMPOP42166 694 aaKnown RBP18.33■□□□□ 0.52
CLIP3-205ENST00000592017 CHRNA5P30532 468 aa18.32■□□□□ 0.52
CLIP3-205ENST00000592017 PIP4K2AP48426 406 aaPredicted RBP18.32■□□□□ 0.52
CLIP3-205ENST00000592017 ZNF330Q9Y3S2 320 aaPredicted RBP18.32■□□□□ 0.52
CLIP3-205ENST00000592017 CHD4Q14839 1912 aa18.31■□□□□ 0.52
CLIP3-205ENST00000592017 SERPINB2P05120 415 aa18.31■□□□□ 0.52
CLIP3-205ENST00000592017 LMOD3Q0VAK6 560 aa18.31■□□□□ 0.52
CLIP3-205ENST00000592017 BICDL1Q6ZP65 573 aa18.31■□□□□ 0.52
CLIP3-205ENST00000592017 MRS2Q9HD23 443 aa18.31■□□□□ 0.52
CLIP3-205ENST00000592017 CAMTA2O94983 1202 aa18.3■□□□□ 0.52
CLIP3-205ENST00000592017 TBC1D9BQ66K14 1250 aa18.3■□□□□ 0.52
CLIP3-205ENST00000592017 PIM2Q9P1W9 311 aa18.3■□□□□ 0.52
CLIP3-205ENST00000592017 DLG5Q8TDM6 1919 aa18.29■□□□□ 0.52
CLIP3-205ENST00000592017 KIAA1551Q9HCM1 1747 aa18.29■□□□□ 0.52
CLIP3-205ENST00000592017 KIF13BQ9NQT8 1826 aa18.29■□□□□ 0.52
CLIP3-205ENST00000592017 NBPF26B4DH59 902 aa18.29■□□□□ 0.52
CLIP3-205ENST00000592017 NBPF10Q6P3W6 841 aaKnown RBP18.29■□□□□ 0.52
CLIP3-205ENST00000592017 NBPF15Q8N660 670 aa18.29■□□□□ 0.52
CLIP3-205ENST00000592017 DALRD3Q5D0E6 543 aaKnown RBP18.28■□□□□ 0.52
CLIP3-205ENST00000592017 ARHGAP27Q6ZUM4 889 aa18.28■□□□□ 0.52
CLIP3-205ENST00000592017 PNISRQ8TF01 805 aaKnown RBP18.28■□□□□ 0.52
CLIP3-205ENST00000592017 ATP10DQ9P241 1426 aa18.28■□□□□ 0.52
CLIP3-205ENST00000592017 ADCY9O60503 1353 aa18.28■□□□□ 0.52
CLIP3-205ENST00000592017 DZIP3Q86Y13 1208 aaKnown RBP18.27■□□□□ 0.52
CLIP3-205ENST00000592017 EIF4A1P60842 406 aaKnown RBP18.26■□□□□ 0.51
CLIP3-205ENST00000592017 GIGYF1O75420 1035 aaPredicted RBP18.25■□□□□ 0.51
CLIP3-205ENST00000592017 NPM2Q86SE8 214 aaKnown RBP18.25■□□□□ 0.51
CLIP3-205ENST00000592017 TSPYL4Q9UJ04 414 aa18.25■□□□□ 0.51
CLIP3-205ENST00000592017 CARMIL3Q8ND23 1372 aa18.25■□□□□ 0.51
CLIP3-205ENST00000592017 N4BP2Q86UW6 1770 aaPredicted RBP18.25■□□□□ 0.51
CLIP3-205ENST00000592017 APAF1O14727 1248 aa18.24■□□□□ 0.51
CLIP3-205ENST00000592017 C1QTNF8P60827 252 aa18.24■□□□□ 0.51
CLIP3-205ENST00000592017 CCDC24Q8N4L8 307 aa18.24■□□□□ 0.51
CLIP3-205ENST00000592017 PRR5LQ6MZQ0 368 aa18.23■□□□□ 0.51
CLIP3-205ENST00000592017 C2CD5Q86YS7 1000 aa18.23■□□□□ 0.51
CLIP3-205ENST00000592017 ZNF526Q8TF50 670 aaPredicted RBP18.23■□□□□ 0.51
CLIP3-205ENST00000592017 SETDB2Q96T68 719 aa18.23■□□□□ 0.51
CLIP3-205ENST00000592017 TRIM35Q9UPQ4 493 aa18.23■□□□□ 0.51
CLIP3-205ENST00000592017 LAS1LQ9Y4W2 734 aaKnown RBP18.23■□□□□ 0.51
CLIP3-205ENST00000592017 SENP3-EIF4A1A0A087X0R7 540 aa18.22■□□□□ 0.51
CLIP3-205ENST00000592017 KDM3BQ7LBC6 1761 aa18.22■□□□□ 0.51
CLIP3-205ENST00000592017 CLEC4GQ6UXB4 293 aa18.21■□□□□ 0.51
CLIP3-205ENST00000592017 BRIP1Q9BX63 1249 aa18.21■□□□□ 0.51
CLIP3-205ENST00000592017 H0YIN7 160 aa18.2■□□□□ 0.5
CLIP3-205ENST00000592017 GPBP1L1Q9HC44 474 aaPredicted RBP18.2■□□□□ 0.5
CLIP3-205ENST00000592017 HLFQ16534 295 aa18.19■□□□□ 0.5
CLIP3-205ENST00000592017 C9orf131Q5VYM1 1079 aa18.19■□□□□ 0.5
CLIP3-205ENST00000592017 NGEFQ8N5V2 710 aa18.19■□□□□ 0.5
CLIP3-205ENST00000592017 TTLL6Q8N841 843 aa18.19■□□□□ 0.5
CLIP3-205ENST00000592017 NRXN2Q9P2S2 1712 aa18.19■□□□□ 0.5
CLIP3-205ENST00000592017 CNBD1Q8NA66 436 aa18.18■□□□□ 0.5
CLIP3-205ENST00000592017 RGL2O15211 777 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms