RNA–Protein interactions for RNA: ENST00000591914.5

SMAD4-213, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 992 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-213ENST00000591914 UTRNP46939 3433 aa36.03■■■■□ 3.36
SMAD4-213ENST00000591914 TAF7Q15545 349 aaPredicted RBP36.01■■■■□ 3.36
SMAD4-213ENST00000591914 SRP68Q9UHB9 627 aaKnown RBP36.01■■■■□ 3.36
SMAD4-213ENST00000591914 COL15A1P39059 1388 aa36■■■■□ 3.35
SMAD4-213ENST00000591914 GOLGB1Q14789 3259 aaKnown RBP35.98■■■■□ 3.35
SMAD4-213ENST00000591914 WDR43Q15061 677 aaKnown RBP eCLIP35.98■■■■□ 3.35
SMAD4-213ENST00000591914 CANXP27824 592 aaKnown RBP35.95■■■■□ 3.35
SMAD4-213ENST00000591914 EIF5P55010 431 aaKnown RBP35.94■■■■□ 3.34
SMAD4-213ENST00000591914 FKBP8Q14318 412 aa35.94■■■■□ 3.34
SMAD4-213ENST00000591914 THUMPD2Q9BTF0 503 aaKnown RBP35.94■■■■□ 3.34
SMAD4-213ENST00000591914 KDM3BQ7LBC6 1761 aa35.94■■■■□ 3.34
SMAD4-213ENST00000591914 ZPR1O75312 459 aa35.93■■■■□ 3.34
SMAD4-213ENST00000591914 TMPOP42166 694 aaKnown RBP35.93■■■■□ 3.34
SMAD4-213ENST00000591914 PNISRQ8TF01 805 aaKnown RBP35.93■■■■□ 3.34
SMAD4-213ENST00000591914 NARFQ9UHQ1 456 aa35.93■■■■□ 3.34
SMAD4-213ENST00000591914 ADAMTS8Q9UP79 889 aa35.93■■■■□ 3.34
SMAD4-213ENST00000591914 RIPK4P57078 832 aa35.92■■■■□ 3.34
SMAD4-213ENST00000591914 USPL1Q5W0Q7 1092 aa35.92■■■■□ 3.34
SMAD4-213ENST00000591914 MIS18AQ9NYP9 233 aa35.92■■■■□ 3.34
SMAD4-213ENST00000591914 KIF13BQ9NQT8 1826 aa35.92■■■■□ 3.34
SMAD4-213ENST00000591914 SNRPA1P09661 255 aaKnown RBP35.91■■■■□ 3.34
SMAD4-213ENST00000591914 GPR162Q16538 588 aa35.91■■■■□ 3.34
SMAD4-213ENST00000591914 CCDC146Q8IYE0 955 aa35.91■■■■□ 3.34
SMAD4-213ENST00000591914 RUNDC1Q96C34 613 aa35.9■■■■□ 3.34
SMAD4-213ENST00000591914 USP16Q9Y5T5 823 aa35.9■■■■□ 3.34
SMAD4-213ENST00000591914 PARP3Q9Y6F1 533 aa35.9■■■■□ 3.34
SMAD4-213ENST00000591914 PRAMEF22A3QJZ6 481 aa35.89■■■■□ 3.34
SMAD4-213ENST00000591914 A1BGP04217 495 aa35.89■■■■□ 3.34
SMAD4-213ENST00000591914 IL6STP40189 918 aaPredicted RBP35.88■■■■□ 3.33
SMAD4-213ENST00000591914 C10orf71Q711Q0 1435 aa35.88■■■■□ 3.33
SMAD4-213ENST00000591914 A0A087WZG4 1122 aa35.87■■■■□ 3.33
SMAD4-213ENST00000591914 LMOD3Q0VAK6 560 aa35.87■■■■□ 3.33
SMAD4-213ENST00000591914 TM4SF1P30408 202 aa35.86■■■■□ 3.33
SMAD4-213ENST00000591914 DDR1Q08345 913 aa35.86■■■■□ 3.33
SMAD4-213ENST00000591914 PELP1Q8IZL8 1130 aaKnown RBP35.85■■■■□ 3.33
SMAD4-213ENST00000591914 BCL2L12Q9HB09 334 aa35.85■■■■□ 3.33
SMAD4-213ENST00000591914 RRP7AQ9Y3A4 280 aaKnown RBP35.84■■■■□ 3.33
SMAD4-213ENST00000591914 KIAA1551Q9HCM1 1747 aa35.83■■■■□ 3.33
SMAD4-213ENST00000591914 YBX3P16989 372 aaKnown RBP eCLIP35.83■■■■□ 3.33
SMAD4-213ENST00000591914 YY1P25490 414 aa35.83■■■■□ 3.33
SMAD4-213ENST00000591914 LAMB4A4D0S4 1761 aa35.82■■■■□ 3.33
SMAD4-213ENST00000591914 SCN7AQ01118 1682 aa35.82■■■■□ 3.33
SMAD4-213ENST00000591914 POLRMTO00411 1230 aaKnown RBP35.81■■■■□ 3.32
SMAD4-213ENST00000591914 EIF4A1P60842 406 aaKnown RBP35.81■■■■□ 3.32
SMAD4-213ENST00000591914 PXDNLA1KZ92 1463 aa35.8■■■■□ 3.32
SMAD4-213ENST00000591914 ZNF330Q9Y3S2 320 aaPredicted RBP35.8■■■■□ 3.32
SMAD4-213ENST00000591914 TGFB2P61812 414 aa35.79■■■■□ 3.32
SMAD4-213ENST00000591914 NFIXQ14938 502 aa35.79■■■■□ 3.32
SMAD4-213ENST00000591914 NEUROD2Q15784 382 aa35.79■■■■□ 3.32
SMAD4-213ENST00000591914 CHD4Q14839 1912 aa35.79■■■■□ 3.32
SMAD4-213ENST00000591914 GIGYF1O75420 1035 aaPredicted RBP35.78■■■■□ 3.32
SMAD4-213ENST00000591914 BABAM1Q9NWV8 329 aa35.78■■■■□ 3.32
SMAD4-213ENST00000591914 TRIM35Q9UPQ4 493 aa35.78■■■■□ 3.32
SMAD4-213ENST00000591914 TBC1D2BQ9UPU7 963 aa35.78■■■■□ 3.32
SMAD4-213ENST00000591914 PIP4K2AP48426 406 aaPredicted RBP35.77■■■■□ 3.32
SMAD4-213ENST00000591914 GRIN3BO60391 1043 aa35.76■■■■□ 3.32
SMAD4-213ENST00000591914 CCDC184Q52MB2 194 aa35.76■■■■□ 3.32
SMAD4-213ENST00000591914 NPM2Q86SE8 214 aaKnown RBP35.76■■■■□ 3.32
SMAD4-213ENST00000591914 TSPYL4Q9UJ04 414 aa35.76■■■■□ 3.32
SMAD4-213ENST00000591914 NRXN2Q9P2S2 1712 aa35.75■■■■□ 3.31
SMAD4-213ENST00000591914 N4BP2Q86UW6 1770 aaPredicted RBP35.75■■■■□ 3.31
SMAD4-213ENST00000591914 NBPF26B4DH59 902 aa35.75■■■■□ 3.31
SMAD4-213ENST00000591914 NBPF10Q6P3W6 841 aaKnown RBP35.75■■■■□ 3.31
SMAD4-213ENST00000591914 NBPF15Q8N660 670 aa35.75■■■■□ 3.31
SMAD4-213ENST00000591914 BCORQ6W2J9 1755 aa35.74■■■■□ 3.31
SMAD4-213ENST00000591914 AFDNP55196 1824 aaKnown RBP35.73■■■■□ 3.31
SMAD4-213ENST00000591914 ANP32CO43423 234 aa35.73■■■■□ 3.31
SMAD4-213ENST00000591914 CAMTA2O94983 1202 aa35.73■■■■□ 3.31
SMAD4-213ENST00000591914 DZIP3Q86Y13 1208 aaKnown RBP35.72■■■■□ 3.31
SMAD4-213ENST00000591914 A0A0G2JLW4 131 aa35.71■■■■□ 3.31
SMAD4-213ENST00000591914 TBC1D9BQ66K14 1250 aa35.69■■■■□ 3.3
SMAD4-213ENST00000591914 WWC3Q9ULE0 1092 aa35.69■■■■□ 3.3
SMAD4-213ENST00000591914 SERPINB2P05120 415 aa35.68■■■■□ 3.3
SMAD4-213ENST00000591914 DPEP1P16444 411 aa35.68■■■■□ 3.3
SMAD4-213ENST00000591914 BRCA1P38398 1863 aaKnown RBP35.67■■■■□ 3.3
SMAD4-213ENST00000591914 APAF1O14727 1248 aa35.67■■■■□ 3.3
SMAD4-213ENST00000591914 CHL1O00533 1208 aa35.66■■■■□ 3.3
SMAD4-213ENST00000591914 BICDL1Q6ZP65 573 aa35.66■■■■□ 3.3
SMAD4-213ENST00000591914 KCNA3P22001 575 aa35.65■■■■□ 3.3
SMAD4-213ENST00000591914 CARMIL3Q8ND23 1372 aa35.64■■■■□ 3.3
SMAD4-213ENST00000591914 RGL2O15211 777 aa35.63■■■■□ 3.29
SMAD4-213ENST00000591914 CLEC4GQ6UXB4 293 aa35.63■■■■□ 3.29
SMAD4-213ENST00000591914 MRS2Q9HD23 443 aa35.61■■■■□ 3.29
SMAD4-213ENST00000591914 ERBB4Q15303 1308 aa35.6■■■■□ 3.29
SMAD4-213ENST00000591914 SETDB2Q96T68 719 aa35.59■■■■□ 3.29
SMAD4-213ENST00000591914 ZNF652Q9Y2D9 606 aa35.59■■■■□ 3.29
SMAD4-213ENST00000591914 LAS1LQ9Y4W2 734 aaKnown RBP35.59■■■■□ 3.29
SMAD4-213ENST00000591914 BCS1LQ9Y276 419 aa35.58■■■■□ 3.29
SMAD4-213ENST00000591914 CHRNA5P30532 468 aa35.57■■■■□ 3.28
SMAD4-213ENST00000591914 CFAP44Q96MT7 982 aa35.57■■■■□ 3.28
SMAD4-213ENST00000591914 PIM2Q9P1W9 311 aa35.57■■■■□ 3.28
SMAD4-213ENST00000591914 MYL6BP14649 208 aa35.55■■■■□ 3.28
SMAD4-213ENST00000591914 PRR5LQ6MZQ0 368 aa35.55■■■■□ 3.28
SMAD4-213ENST00000591914 DLEC1Q9Y238 1755 aa35.53■■■■□ 3.28
SMAD4-213ENST00000591914 ARFGEF1Q9Y6D6 1849 aa35.53■■■■□ 3.28
SMAD4-213ENST00000591914 ZNF853P0CG23 659 aa35.53■■■■□ 3.28
SMAD4-213ENST00000591914 PDIA6Q15084 440 aa35.53■■■■□ 3.28
SMAD4-213ENST00000591914 NGEFQ8N5V2 710 aa35.53■■■■□ 3.28
SMAD4-213ENST00000591914 ANKRD31Q8N7Z5 1873 aa35.53■■■■□ 3.28
SMAD4-213ENST00000591914 EIF2S2P20042 333 aaKnown RBP35.52■■■■□ 3.28
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms