RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 SPDYE5A6NIY4 337 aa12.25□□□□□ -0.45
SMAD4-209ENST00000589941 MMP16P51512 607 aa12.25□□□□□ -0.45
SMAD4-209ENST00000589941 SF3B2Q13435 895 aaKnown RBP12.25□□□□□ -0.45
SMAD4-209ENST00000589941 ORAI2Q96SN7 254 aa12.25□□□□□ -0.45
SMAD4-209ENST00000589941 DAPK1P53355 1430 aa12.25□□□□□ -0.45
SMAD4-209ENST00000589941 SENP3-EIF4A1A0A087X0R7 540 aa12.24□□□□□ -0.45
SMAD4-209ENST00000589941 DXOO77932 396 aaKnown RBP12.24□□□□□ -0.45
SMAD4-209ENST00000589941 JUNDP17535 347 aa12.24□□□□□ -0.45
SMAD4-209ENST00000589941 CHD4Q14839 1912 aa12.23□□□□□ -0.45
SMAD4-209ENST00000589941 PPP2R2DQ66LE6 453 aa12.23□□□□□ -0.45
SMAD4-209ENST00000589941 UTRNP46939 3433 aa12.23□□□□□ -0.45
SMAD4-209ENST00000589941 GGCXP38435 758 aa12.22□□□□□ -0.45
SMAD4-209ENST00000589941 SEPT12Q8IYM1 358 aa12.22□□□□□ -0.45
SMAD4-209ENST00000589941 ADGRB2O60241 1585 aa12.22□□□□□ -0.45
SMAD4-209ENST00000589941 PLA2G2CQ5R387 149 aa12.21□□□□□ -0.45
SMAD4-209ENST00000589941 FCF1Q9Y324 198 aaKnown RBP12.21□□□□□ -0.45
SMAD4-209ENST00000589941 THSD7AQ9UPZ6 1657 aa12.21□□□□□ -0.45
SMAD4-209ENST00000589941 BAG6P46379 1132 aa12.2□□□□□ -0.46
SMAD4-209ENST00000589941 ANKLE1Q8NAG6 615 aa12.2□□□□□ -0.46
SMAD4-209ENST00000589941 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.2□□□□□ -0.46
SMAD4-209ENST00000589941 CDC42BPGQ6DT37 1551 aa12.2□□□□□ -0.46
SMAD4-209ENST00000589941 ADGRL2O95490 1459 aa12.2□□□□□ -0.46
SMAD4-209ENST00000589941 DISP2A7MBM2 1401 aa12.2□□□□□ -0.46
SMAD4-209ENST00000589941 MYOM1P52179 1685 aa12.19□□□□□ -0.46
SMAD4-209ENST00000589941 XPCQ01831 940 aaPredicted RBP12.19□□□□□ -0.46
SMAD4-209ENST00000589941 TMEM132AQ24JP5 1023 aa12.19□□□□□ -0.46
SMAD4-209ENST00000589941 UNC5CLQ8IV45 518 aa12.19□□□□□ -0.46
SMAD4-209ENST00000589941 TSC1Q92574 1164 aa12.19□□□□□ -0.46
SMAD4-209ENST00000589941 EMID1Q96A84 441 aaPredicted RBP12.19□□□□□ -0.46
SMAD4-209ENST00000589941 NEXMIFQ5QGS0 1516 aa12.19□□□□□ -0.46
SMAD4-209ENST00000589941 NRKQ7Z2Y5 1582 aa12.18□□□□□ -0.46
SMAD4-209ENST00000589941 RGPD8O14715 1765 aaPredicted RBP12.18□□□□□ -0.46
SMAD4-209ENST00000589941 RFC5P40937 340 aa12.18□□□□□ -0.46
SMAD4-209ENST00000589941 DESI1Q6ICB0 168 aa12.18□□□□□ -0.46
SMAD4-209ENST00000589941 KRT27Q7Z3Y8 459 aa12.18□□□□□ -0.46
SMAD4-209ENST00000589941 CASZ1Q86V15 1759 aa12.18□□□□□ -0.46
SMAD4-209ENST00000589941 PER1O15534 1290 aaPredicted RBP12.17□□□□□ -0.46
SMAD4-209ENST00000589941 ZNF784Q8NCA9 323 aaPredicted RBP12.17□□□□□ -0.46
SMAD4-209ENST00000589941 FAM182BQ5T319 152 aa12.16□□□□□ -0.46
SMAD4-209ENST00000589941 ROBO2Q9HCK4 1378 aa12.16□□□□□ -0.46
SMAD4-209ENST00000589941 FMN2Q9NZ56 1722 aa12.15□□□□□ -0.46
SMAD4-209ENST00000589941 CTDSPL2Q05D32 466 aa12.15□□□□□ -0.46
SMAD4-209ENST00000589941 LYPD8Q6UX82 237 aa12.15□□□□□ -0.46
SMAD4-209ENST00000589941 KIF1AQ12756 1690 aa12.15□□□□□ -0.46
SMAD4-209ENST00000589941 EZH2Q15910 746 aaKnown RBP12.14□□□□□ -0.47
SMAD4-209ENST00000589941 PTPRNQ16849 979 aa12.14□□□□□ -0.47
SMAD4-209ENST00000589941 KANK4Q5T7N3 995 aaPredicted RBP12.14□□□□□ -0.47
SMAD4-209ENST00000589941 CCDC24Q8N4L8 307 aa12.14□□□□□ -0.47
SMAD4-209ENST00000589941 NUDT12Q9BQG2 462 aa12.14□□□□□ -0.47
SMAD4-209ENST00000589941 CHIC2Q9UKJ5 165 aa12.14□□□□□ -0.47
SMAD4-209ENST00000589941 ANKRD30AQ9BXX3 1397 aa12.14□□□□□ -0.47
SMAD4-209ENST00000589941 CLTCL1P53675 1640 aa12.13□□□□□ -0.47
SMAD4-209ENST00000589941 AP1G2O75843 785 aa12.13□□□□□ -0.47
SMAD4-209ENST00000589941 LIAT1Q6ZQX7 453 aa12.13□□□□□ -0.47
SMAD4-209ENST00000589941 HELBQ8NG08 1087 aaPredicted RBP12.13□□□□□ -0.47
SMAD4-209ENST00000589941 IFT172Q9UG01 1749 aa12.13□□□□□ -0.47
SMAD4-209ENST00000589941 CRYBG1Q9Y4K1 1723 aa12.12□□□□□ -0.47
SMAD4-209ENST00000589941 VPS72Q15906 364 aa12.12□□□□□ -0.47
SMAD4-209ENST00000589941 PTCRAQ6ISU1 281 aaPredicted RBP12.12□□□□□ -0.47
SMAD4-209ENST00000589941 NINLQ9Y2I6 1382 aa12.12□□□□□ -0.47
SMAD4-209ENST00000589941 CCNYL3P0C7X3 344 aa12.11□□□□□ -0.47
SMAD4-209ENST00000589941 C1QTNF8P60827 252 aa12.11□□□□□ -0.47
SMAD4-209ENST00000589941 PRKD2Q9BZL6 878 aa12.11□□□□□ -0.47
SMAD4-209ENST00000589941 PRAG1Q86YV5 1406 aa12.11□□□□□ -0.47
SMAD4-209ENST00000589941 NPHP3Q7Z494 1330 aa12.11□□□□□ -0.47
SMAD4-209ENST00000589941 KIF1BO60333 1816 aa12.1□□□□□ -0.47
SMAD4-209ENST00000589941 LRRN4Q8WUT4 740 aa12.1□□□□□ -0.47
SMAD4-209ENST00000589941 ANKRD50Q9ULJ7 1429 aa12.1□□□□□ -0.47
SMAD4-209ENST00000589941 F12P00748 615 aaPredicted RBP12.09□□□□□ -0.47
SMAD4-209ENST00000589941 MYT1Q01538 1121 aa12.09□□□□□ -0.47
SMAD4-209ENST00000589941 EVA1BQ9NVM1 165 aa12.09□□□□□ -0.47
SMAD4-209ENST00000589941 MAP10Q9P2G4 905 aa12.09□□□□□ -0.47
SMAD4-209ENST00000589941 COL14A1Q05707 1796 aaKnown RBP12.09□□□□□ -0.47
SMAD4-209ENST00000589941 SLC19A1P41440 591 aa12.08□□□□□ -0.48
SMAD4-209ENST00000589941 CAMKK2Q96RR4 588 aa12.08□□□□□ -0.48
SMAD4-209ENST00000589941 CCDC9Q9Y3X0 531 aaKnown RBP12.08□□□□□ -0.48
SMAD4-209ENST00000589941 FOXO3O43524 673 aa12.07□□□□□ -0.48
SMAD4-209ENST00000589941 USP17L8P0C7I0 530 aa12.07□□□□□ -0.48
SMAD4-209ENST00000589941 KCNH2Q12809 1159 aa12.07□□□□□ -0.48
SMAD4-209ENST00000589941 SHANK3Q9BYB0 1731 aa12.07□□□□□ -0.48
SMAD4-209ENST00000589941 PPLO60437 1756 aa12.07□□□□□ -0.48
SMAD4-209ENST00000589941 TRPM3Q9HCF6 1732 aaPredicted RBP12.06□□□□□ -0.48
SMAD4-209ENST00000589941 TMEM259Q4ZIN3 620 aa12.06□□□□□ -0.48
SMAD4-209ENST00000589941 ESCO1Q5FWF5 840 aa12.06□□□□□ -0.48
SMAD4-209ENST00000589941 SPATA31A3Q5VYP0 1347 aa12.06□□□□□ -0.48
SMAD4-209ENST00000589941 RGPD3A6NKT7 1758 aaPredicted RBP12.05□□□□□ -0.48
SMAD4-209ENST00000589941 RGPD4Q7Z3J3 1758 aa12.05□□□□□ -0.48
SMAD4-209ENST00000589941 TNS3Q68CZ2 1445 aa12.05□□□□□ -0.48
SMAD4-209ENST00000589941 VPS8Q8N3P4 1428 aa12.05□□□□□ -0.48
SMAD4-209ENST00000589941 RGS20O76081 388 aa12.05□□□□□ -0.48
SMAD4-209ENST00000589941 CTHP32929 405 aa12.05□□□□□ -0.48
SMAD4-209ENST00000589941 HMX1Q9NP08 348 aaPredicted RBP12.05□□□□□ -0.48
SMAD4-209ENST00000589941 PPP1R1BQ9UD71 204 aaPredicted RBP12.05□□□□□ -0.48
SMAD4-209ENST00000589941 KNDC1Q76NI1 1749 aa12.05□□□□□ -0.48
SMAD4-209ENST00000589941 NAIPQ13075 1403 aa12.04□□□□□ -0.48
SMAD4-209ENST00000589941 ALS2Q96Q42 1657 aa12.04□□□□□ -0.48
SMAD4-209ENST00000589941 V9GY48 417 aaPredicted RBP12.04□□□□□ -0.48
SMAD4-209ENST00000589941 SBF2Q86WG5 1849 aa12.04□□□□□ -0.48
SMAD4-209ENST00000589941 HFM1A2PYH4 1435 aa12.03□□□□□ -0.48
SMAD4-209ENST00000589941 RPIAP49247 311 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms