RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 FOXK2Q01167 660 aa11.63□□□□□ -0.55
VMP1-208ENST00000588617 ESCO1Q5FWF5 840 aa11.63□□□□□ -0.55
VMP1-208ENST00000588617 CYP2U1Q7Z449 544 aa11.63□□□□□ -0.55
VMP1-208ENST00000588617 ABTB2Q8N961 1025 aa11.63□□□□□ -0.55
VMP1-208ENST00000588617 FAM129BQ96TA1 746 aa11.63□□□□□ -0.55
VMP1-208ENST00000588617 CDK11AQ9UQ88 783 aaPredicted RBP11.63□□□□□ -0.55
VMP1-208ENST00000588617 GPR182O15218 404 aa11.62□□□□□ -0.55
VMP1-208ENST00000588617 GNRH1P01148 92 aa11.62□□□□□ -0.55
VMP1-208ENST00000588617 FSHRP23945 695 aa11.62□□□□□ -0.55
VMP1-208ENST00000588617 SKOR1P84550 965 aa11.62□□□□□ -0.55
VMP1-208ENST00000588617 NT5DC4Q86YG4 428 aa11.62□□□□□ -0.55
VMP1-208ENST00000588617 ZNF784Q8NCA9 323 aaPredicted RBP11.62□□□□□ -0.55
VMP1-208ENST00000588617 CHMP3Q9Y3E7 222 aa11.62□□□□□ -0.55
VMP1-208ENST00000588617 IGHA2P01877 340 aa11.61□□□□□ -0.55
VMP1-208ENST00000588617 SMTNP53814 917 aa11.61□□□□□ -0.55
VMP1-208ENST00000588617 WNT7BP56706 349 aa11.61□□□□□ -0.55
VMP1-208ENST00000588617 PSMA6P60900 246 aaKnown RBP11.61□□□□□ -0.55
VMP1-208ENST00000588617 DAB2P98082 770 aa11.61□□□□□ -0.55
VMP1-208ENST00000588617 RAD51AP2Q09MP3 1159 aa11.61□□□□□ -0.55
VMP1-208ENST00000588617 NIF3L1Q9GZT8 377 aa11.61□□□□□ -0.55
VMP1-208ENST00000588617 QTRT2Q9H974 415 aaKnown RBP11.61□□□□□ -0.55
VMP1-208ENST00000588617 SMARCA5O60264 1052 aaPredicted RBP11.6□□□□□ -0.55
VMP1-208ENST00000588617 MYT1Q01538 1121 aa11.6□□□□□ -0.55
VMP1-208ENST00000588617 METTL16Q86W50 562 aaKnown RBP11.6□□□□□ -0.55
VMP1-208ENST00000588617 EHBP1Q8NDI1 1231 aa11.6□□□□□ -0.55
VMP1-208ENST00000588617 RNF34Q969K3 372 aa11.6□□□□□ -0.55
VMP1-208ENST00000588617 LRFN2Q9ULH4 789 aa11.6□□□□□ -0.55
VMP1-208ENST00000588617 ZBTB39O15060 712 aa11.59□□□□□ -0.55
VMP1-208ENST00000588617 BRD2P25440 801 aaKnown RBP11.59□□□□□ -0.55
VMP1-208ENST00000588617 ATCAYQ86WG3 371 aa11.59□□□□□ -0.55
VMP1-208ENST00000588617 ALKBH8Q96BT7 664 aaKnown RBP11.59□□□□□ -0.55
VMP1-208ENST00000588617 SETDB2Q96T68 719 aa11.59□□□□□ -0.55
VMP1-208ENST00000588617 RAB6BQ9NRW1 208 aa11.59□□□□□ -0.55
VMP1-208ENST00000588617 CANXP27824 592 aaKnown RBP11.58□□□□□ -0.56
VMP1-208ENST00000588617 MTFR1Q15390 333 aa11.58□□□□□ -0.56
VMP1-208ENST00000588617 MYO19Q96H55 970 aa11.58□□□□□ -0.56
VMP1-208ENST00000588617 NGLY1Q96IV0 654 aa11.58□□□□□ -0.56
VMP1-208ENST00000588617 CDK15Q96Q40 435 aa11.58□□□□□ -0.56
VMP1-208ENST00000588617 METTL5Q9NRN9 209 aaKnown RBP11.58□□□□□ -0.56
VMP1-208ENST00000588617 POLIQ9UNA4 740 aa11.58□□□□□ -0.56
VMP1-208ENST00000588617 PNMA6FA0A0J9YX94 578 aa11.57□□□□□ -0.56
VMP1-208ENST00000588617 LILRA1O75019 489 aa11.57□□□□□ -0.56
VMP1-208ENST00000588617 GRM5P41594 1212 aa11.57□□□□□ -0.56
VMP1-208ENST00000588617 FANCCQ00597 558 aa11.57□□□□□ -0.56
VMP1-208ENST00000588617 TANGO6Q9C0B7 1094 aa11.57□□□□□ -0.56
VMP1-208ENST00000588617 ENOX2Q16206 610 aaKnown RBP11.56□□□□□ -0.56
VMP1-208ENST00000588617 PPP1R26Q5T8A7 1209 aaPredicted RBP11.56□□□□□ -0.56
VMP1-208ENST00000588617 ALG1LQ6GMV1 187 aa11.56□□□□□ -0.56
VMP1-208ENST00000588617 SPATA32Q96LK8 384 aa11.56□□□□□ -0.56
VMP1-208ENST00000588617 CCSER2Q9H7U1 834 aa11.56□□□□□ -0.56
VMP1-208ENST00000588617 ZNF76P36508 570 aa11.55□□□□□ -0.56
VMP1-208ENST00000588617 DNM1Q05193 864 aaKnown RBP11.55□□□□□ -0.56
VMP1-208ENST00000588617 FAM26DQ5JW98 314 aa11.55□□□□□ -0.56
VMP1-208ENST00000588617 CCDC116Q8IYX3 515 aa11.55□□□□□ -0.56
VMP1-208ENST00000588617 TGIF2Q9GZN2 237 aa11.55□□□□□ -0.56
VMP1-208ENST00000588617 ARHGEF10LQ9HCE6 1279 aa11.55□□□□□ -0.56
VMP1-208ENST00000588617 CDK2AP1O14519 115 aa11.54□□□□□ -0.56
VMP1-208ENST00000588617 MZF1P28698 734 aaPredicted RBP11.54□□□□□ -0.56
VMP1-208ENST00000588617 ADD1P35611 737 aaKnown RBP11.54□□□□□ -0.56
VMP1-208ENST00000588617 USP5P45974 858 aa11.54□□□□□ -0.56
VMP1-208ENST00000588617 PPP1R18Q6NYC8 613 aa11.54□□□□□ -0.56
VMP1-208ENST00000588617 XAGE2Q96GT9 111 aa11.54□□□□□ -0.56
VMP1-208ENST00000588617 IRX2Q9BZI1 471 aaPredicted RBP11.54□□□□□ -0.56
VMP1-208ENST00000588617 CAPN10Q9HC96 672 aa11.54□□□□□ -0.56
VMP1-208ENST00000588617 USP3Q9Y6I4 520 aa11.54□□□□□ -0.56
VMP1-208ENST00000588617 TLR1Q15399 786 aa11.53□□□□□ -0.56
VMP1-208ENST00000588617 PLA2G2CQ5R387 149 aa11.53□□□□□ -0.56
VMP1-208ENST00000588617 RC3H1Q5TC82 1133 aaKnown RBP11.53□□□□□ -0.56
VMP1-208ENST00000588617 GJD3Q8N144 294 aa11.53□□□□□ -0.56
VMP1-208ENST00000588617 EDEM1Q92611 657 aa11.53□□□□□ -0.56
VMP1-208ENST00000588617 SERTM1A2A2V5 107 aa11.52□□□□□ -0.57
VMP1-208ENST00000588617 RNF223E7ERA6 249 aa11.52□□□□□ -0.57
VMP1-208ENST00000588617 IL2RAP01589 272 aa11.52□□□□□ -0.57
VMP1-208ENST00000588617 C11orf91Q3C1V1 193 aa11.52□□□□□ -0.57
VMP1-208ENST00000588617 TINF2Q9BSI4 451 aa11.52□□□□□ -0.57
VMP1-208ENST00000588617 ZNF232Q9UNY5 417 aa11.52□□□□□ -0.57
VMP1-208ENST00000588617 HCN4Q9Y3Q4 1203 aa11.52□□□□□ -0.57
VMP1-208ENST00000588617 TLL2Q9Y6L7 1015 aa11.52□□□□□ -0.57
VMP1-208ENST00000588617 GNA15P30679 374 aa11.51□□□□□ -0.57
VMP1-208ENST00000588617 DGKZQ13574 1117 aa11.51□□□□□ -0.57
VMP1-208ENST00000588617 ANKLE1Q8NAG6 615 aa11.51□□□□□ -0.57
VMP1-208ENST00000588617 CNKSR1Q969H4 720 aa11.51□□□□□ -0.57
VMP1-208ENST00000588617 PRKAG2Q9UGJ0 569 aa11.51□□□□□ -0.57
VMP1-208ENST00000588617 IQSEC3Q9UPP2 1182 aaPredicted RBP11.51□□□□□ -0.57
VMP1-208ENST00000588617 EML1O00423 815 aa11.5□□□□□ -0.57
VMP1-208ENST00000588617 PDGFAP04085 211 aa11.5□□□□□ -0.57
VMP1-208ENST00000588617 ZAP70P43403 619 aa11.5□□□□□ -0.57
VMP1-208ENST00000588617 DPH6Q7L8W6 267 aa11.5□□□□□ -0.57
VMP1-208ENST00000588617 ETFBKMTQ8IXQ9 262 aa11.5□□□□□ -0.57
VMP1-208ENST00000588617 ALDH16A1Q8IZ83 802 aa11.5□□□□□ -0.57
VMP1-208ENST00000588617 NBPF15Q8N660 670 aa11.5□□□□□ -0.57
VMP1-208ENST00000588617 SLC43A3Q8NBI5 491 aa11.5□□□□□ -0.57
VMP1-208ENST00000588617 ACBD3Q9H3P7 528 aa11.5□□□□□ -0.57
VMP1-208ENST00000588617 PGPEP1Q9NXJ5 209 aa11.5□□□□□ -0.57
VMP1-208ENST00000588617 NOS2P35228 1153 aa11.49□□□□□ -0.57
VMP1-208ENST00000588617 NR5A1Q13285 461 aa11.49□□□□□ -0.57
VMP1-208ENST00000588617 SH3PXD2AQ5TCZ1 1133 aa11.49□□□□□ -0.57
VMP1-208ENST00000588617 POTEAQ6S8J7 498 aa11.49□□□□□ -0.57
VMP1-208ENST00000588617 MPNDQ8N594 471 aa11.49□□□□□ -0.57
VMP1-208ENST00000588617 IFT43Q96FT9 208 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms