RNA–Protein interactions for RNA: ENST00000587945.1

VMP1-206, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-206ENST00000587945 ADCY9O60503 1353 aa19.21■□□□□ 0.67
VMP1-206ENST00000587945 SENP3-EIF4A1A0A087X0R7 540 aa19.21■□□□□ 0.67
VMP1-206ENST00000587945 FCHSD2O94868 740 aa19.21■□□□□ 0.67
VMP1-206ENST00000587945 C4AP0C0L4 1744 aa19.21■□□□□ 0.67
VMP1-206ENST00000587945 ZNF790Q6PG37 636 aa19.21■□□□□ 0.67
VMP1-206ENST00000587945 ADAMTS7Q9UKP4 1686 aa19.2■□□□□ 0.66
VMP1-206ENST00000587945 COL15A1P39059 1388 aa19.2■□□□□ 0.66
VMP1-206ENST00000587945 KCNQ3O43525 872 aa19.2■□□□□ 0.66
VMP1-206ENST00000587945 STARD3NLO95772 234 aa19.2■□□□□ 0.66
VMP1-206ENST00000587945 BCL2L12Q9HB09 334 aa19.2■□□□□ 0.66
VMP1-206ENST00000587945 NARFQ9UHQ1 456 aa19.2■□□□□ 0.66
VMP1-206ENST00000587945 NFIXQ14938 502 aa19.19■□□□□ 0.66
VMP1-206ENST00000587945 ARHGAP27Q6ZUM4 889 aa19.19■□□□□ 0.66
VMP1-206ENST00000587945 GPBP1L1Q9HC44 474 aaPredicted RBP19.19■□□□□ 0.66
VMP1-206ENST00000587945 CHRNA5P30532 468 aa19.18■□□□□ 0.66
VMP1-206ENST00000587945 CEMIPQ8WUJ3 1361 aa19.18■□□□□ 0.66
VMP1-206ENST00000587945 HEG1Q9ULI3 1381 aa19.18■□□□□ 0.66
VMP1-206ENST00000587945 BTBD11A6QL63 1104 aa19.17■□□□□ 0.66
VMP1-206ENST00000587945 EIF5P55010 431 aaKnown RBP19.17■□□□□ 0.66
VMP1-206ENST00000587945 PIM2Q9P1W9 311 aa19.17■□□□□ 0.66
VMP1-206ENST00000587945 MCM10Q7L590 875 aa19.16■□□□□ 0.66
VMP1-206ENST00000587945 FMNL2Q96PY5 1086 aa19.16■□□□□ 0.66
VMP1-206ENST00000587945 ZNF330Q9Y3S2 320 aaPredicted RBP19.16■□□□□ 0.66
VMP1-206ENST00000587945 KIAA1551Q9HCM1 1747 aa19.16■□□□□ 0.66
VMP1-206ENST00000587945 N4BP2Q86UW6 1770 aaPredicted RBP19.15■□□□□ 0.66
VMP1-206ENST00000587945 A1BGP04217 495 aa19.15■□□□□ 0.66
VMP1-206ENST00000587945 DCTN1Q14203 1278 aa19.15■□□□□ 0.66
VMP1-206ENST00000587945 BICDL1Q6ZP65 573 aa19.15■□□□□ 0.66
VMP1-206ENST00000587945 KIF13BQ9NQT8 1826 aa19.15■□□□□ 0.66
VMP1-206ENST00000587945 SERPINB2P05120 415 aa19.14■□□□□ 0.65
VMP1-206ENST00000587945 DALRD3Q5D0E6 543 aaKnown RBP19.14■□□□□ 0.65
VMP1-206ENST00000587945 RTF1Q92541 710 aaKnown RBP19.14■□□□□ 0.65
VMP1-206ENST00000587945 TEX13AQ9BXU3 409 aaPredicted RBP19.14■□□□□ 0.65
VMP1-206ENST00000587945 TBC1D2BQ9UPU7 963 aa19.13■□□□□ 0.65
VMP1-206ENST00000587945 A0A087WZG4 1122 aa19.12■□□□□ 0.65
VMP1-206ENST00000587945 PRAMEF22A3QJZ6 481 aa19.12■□□□□ 0.65
VMP1-206ENST00000587945 PIP4K2AP48426 406 aaPredicted RBP19.11■□□□□ 0.65
VMP1-206ENST00000587945 TBC1D9BQ66K14 1250 aa19.11■□□□□ 0.65
VMP1-206ENST00000587945 USP16Q9Y5T5 823 aa19.11■□□□□ 0.65
VMP1-206ENST00000587945 IL6STP40189 918 aaPredicted RBP19.1■□□□□ 0.65
VMP1-206ENST00000587945 C9orf131Q5VYM1 1079 aa19.1■□□□□ 0.65
VMP1-206ENST00000587945 UBR2Q8IWV8 1755 aa19.1■□□□□ 0.65
VMP1-206ENST00000587945 CARMIL3Q8ND23 1372 aa19.08■□□□□ 0.65
VMP1-206ENST00000587945 KIF3CO14782 793 aa19.08■□□□□ 0.64
VMP1-206ENST00000587945 CCDC24Q8N4L8 307 aa19.08■□□□□ 0.64
VMP1-206ENST00000587945 MIS18AQ9NYP9 233 aa19.08■□□□□ 0.64
VMP1-206ENST00000587945 VIRMAQ69YN4 1812 aaKnown RBP19.08■□□□□ 0.64
VMP1-206ENST00000587945 HTATSF1O43719 755 aaKnown RBP19.07■□□□□ 0.64
VMP1-206ENST00000587945 CAMTA2O94983 1202 aa19.07■□□□□ 0.64
VMP1-206ENST00000587945 C2CD5Q86YS7 1000 aa19.07■□□□□ 0.64
VMP1-206ENST00000587945 SNRPA1P09661 255 aaKnown RBP19.06■□□□□ 0.64
VMP1-206ENST00000587945 NPM2Q86SE8 214 aaKnown RBP19.06■□□□□ 0.64
VMP1-206ENST00000587945 TAF7Q15545 349 aaPredicted RBP19.05■□□□□ 0.64
VMP1-206ENST00000587945 DZIP3Q86Y13 1208 aaKnown RBP19.05■□□□□ 0.64
VMP1-206ENST00000587945 PLEKHF1Q96S99 279 aa19.05■□□□□ 0.64
VMP1-206ENST00000587945 RNF181Q9P0P0 153 aa19.05■□□□□ 0.64
VMP1-206ENST00000587945 SIPA1L3O60292 1781 aaPredicted RBP19.05■□□□□ 0.64
VMP1-206ENST00000587945 TTLL6Q8N841 843 aa19.04■□□□□ 0.64
VMP1-206ENST00000587945 NMRK2Q9NPI5 230 aa19.04■□□□□ 0.64
VMP1-206ENST00000587945 H0YIN7 160 aa19.03■□□□□ 0.64
VMP1-206ENST00000587945 NEFMP07197 916 aa19.03■□□□□ 0.64
VMP1-206ENST00000587945 RASSF7Q02833 373 aa19.03■□□□□ 0.64
VMP1-206ENST00000587945 PRR5LQ6MZQ0 368 aa19.03■□□□□ 0.64
VMP1-206ENST00000587945 THUMPD2Q9BTF0 503 aaKnown RBP19.03■□□□□ 0.64
VMP1-206ENST00000587945 NBPF26B4DH59 902 aa19.02■□□□□ 0.64
VMP1-206ENST00000587945 NBPF10Q6P3W6 841 aaKnown RBP19.02■□□□□ 0.64
VMP1-206ENST00000587945 NBPF15Q8N660 670 aa19.02■□□□□ 0.64
VMP1-206ENST00000587945 SETDB2Q96T68 719 aa19.02■□□□□ 0.64
VMP1-206ENST00000587945 BRCA1P38398 1863 aaKnown RBP19.02■□□□□ 0.64
VMP1-206ENST00000587945 NFE2L2Q16236 605 aa19.01■□□□□ 0.63
VMP1-206ENST00000587945 ZNF622Q969S3 477 aaKnown RBP eCLIP19.01■□□□□ 0.632e-7■■□□□ 12.7
VMP1-206ENST00000587945 BRIP1Q9BX63 1249 aa19.01■□□□□ 0.63
VMP1-206ENST00000587945 NRXN2Q9P2S2 1712 aa19■□□□□ 0.63
VMP1-206ENST00000587945 HSPA6P17066 643 aa19■□□□□ 0.63
VMP1-206ENST00000587945 PRELPP51888 382 aa19■□□□□ 0.63
VMP1-206ENST00000587945 DDX10Q13206 875 aaKnown RBP19■□□□□ 0.63
VMP1-206ENST00000587945 NPHP1O15259 732 aa18.99■□□□□ 0.63
VMP1-206ENST00000587945 PDE6BP35913 854 aa18.99■□□□□ 0.63
VMP1-206ENST00000587945 CNBD1Q8NA66 436 aa18.99■□□□□ 0.63
VMP1-206ENST00000587945 ZNF219Q9P2Y4 722 aaPredicted RBP18.99■□□□□ 0.63
VMP1-206ENST00000587945 AFDNP55196 1824 aaKnown RBP18.99■□□□□ 0.63
VMP1-206ENST00000587945 MAPK8IP3Q9UPT6 1336 aa18.98■□□□□ 0.63
VMP1-206ENST00000587945 RALBP1Q15311 655 aa18.97■□□□□ 0.63
VMP1-206ENST00000587945 PNISRQ8TF01 805 aaKnown RBP18.97■□□□□ 0.63
VMP1-206ENST00000587945 SCN7AQ01118 1682 aa18.96■□□□□ 0.63
VMP1-206ENST00000587945 ARFGEF1Q9Y6D6 1849 aa18.96■□□□□ 0.63
VMP1-206ENST00000587945 NFKBIEO00221 500 aa18.96■□□□□ 0.63
VMP1-206ENST00000587945 TOMM70O94826 608 aa18.96■□□□□ 0.63
VMP1-206ENST00000587945 LMNB1P20700 586 aa18.96■□□□□ 0.63
VMP1-206ENST00000587945 EIF4A1P60842 406 aaKnown RBP18.96■□□□□ 0.63
VMP1-206ENST00000587945 ST5P78524 1137 aa18.96■□□□□ 0.63
VMP1-206ENST00000587945 CLEC4GQ6UXB4 293 aa18.96■□□□□ 0.63
VMP1-206ENST00000587945 NGEFQ8N5V2 710 aa18.96■□□□□ 0.63
VMP1-206ENST00000587945 PNNQ9H307 717 aaKnown RBP18.96■□□□□ 0.63
VMP1-206ENST00000587945 CEP350Q5VT06 3117 aa18.96■□□□□ 0.63
VMP1-206ENST00000587945 C21orf2O43822 256 aa18.95■□□□□ 0.62
VMP1-206ENST00000587945 NBPF5PQ86XG9 351 aaPredicted RBP18.95■□□□□ 0.62
VMP1-206ENST00000587945 RRAGCQ9HB90 399 aa18.95■□□□□ 0.62
VMP1-206ENST00000587945 PDZRN3Q9UPQ7 1066 aa18.95■□□□□ 0.62
VMP1-206ENST00000587945 ZNF652Q9Y2D9 606 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms