RNA–Protein interactions for RNA: ENST00000586407.1

LIG3-208, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 815 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-208ENST00000586407 COL15A1P39059 1388 aa37.29■■■■□ 3.56
LIG3-208ENST00000586407 FMNL2Q96PY5 1086 aa37.28■■■■□ 3.56
LIG3-208ENST00000586407 KIF13BQ9NQT8 1826 aa37.27■■■■□ 3.56
LIG3-208ENST00000586407 HTATSF1O43719 755 aaKnown RBP37.27■■■■□ 3.56
LIG3-208ENST00000586407 NFE2L2Q16236 605 aa37.26■■■■□ 3.56
LIG3-208ENST00000586407 MAPK8IP3Q9UPT6 1336 aa37.26■■■■□ 3.56
LIG3-208ENST00000586407 KIAA1551Q9HCM1 1747 aa37.25■■■■□ 3.55
LIG3-208ENST00000586407 USPL1Q5W0Q7 1092 aa37.25■■■■□ 3.55
LIG3-208ENST00000586407 THUMPD2Q9BTF0 503 aaKnown RBP37.25■■■■□ 3.55
LIG3-208ENST00000586407 N4BP2Q86UW6 1770 aaPredicted RBP37.24■■■■□ 3.55
LIG3-208ENST00000586407 STARD3NLO95772 234 aa37.24■■■■□ 3.55
LIG3-208ENST00000586407 MIS18AQ9NYP9 233 aa37.24■■■■□ 3.55
LIG3-208ENST00000586407 PRAMEF22A3QJZ6 481 aa37.23■■■■□ 3.55
LIG3-208ENST00000586407 PRKRIP1Q9H875 184 aaPredicted RBP37.23■■■■□ 3.55
LIG3-208ENST00000586407 ZPR1O75312 459 aa37.22■■■■□ 3.55
LIG3-208ENST00000586407 DDR1Q08345 913 aa37.22■■■■□ 3.55
LIG3-208ENST00000586407 PARP3Q9Y6F1 533 aa37.22■■■■□ 3.55
LIG3-208ENST00000586407 C10orf71Q711Q0 1435 aa37.21■■■■□ 3.55
LIG3-208ENST00000586407 ZNF330Q9Y3S2 320 aaPredicted RBP37.2■■■■□ 3.55
LIG3-208ENST00000586407 KDM3BQ7LBC6 1761 aa37.19■■■■□ 3.54
LIG3-208ENST00000586407 A1BGP04217 495 aa37.19■■■■□ 3.54
LIG3-208ENST00000586407 TAF7Q15545 349 aaPredicted RBP37.19■■■■□ 3.54
LIG3-208ENST00000586407 PNNQ9H307 717 aaKnown RBP37.19■■■■□ 3.54
LIG3-208ENST00000586407 NARFQ9UHQ1 456 aa37.19■■■■□ 3.54
LIG3-208ENST00000586407 CCDC146Q8IYE0 955 aa37.18■■■■□ 3.54
LIG3-208ENST00000586407 TEX13AQ9BXU3 409 aaPredicted RBP37.18■■■■□ 3.54
LIG3-208ENST00000586407 USP16Q9Y5T5 823 aa37.18■■■■□ 3.54
LIG3-208ENST00000586407 PXDNLA1KZ92 1463 aa37.18■■■■□ 3.54
LIG3-208ENST00000586407 PIP4K2AP48426 406 aaPredicted RBP37.17■■■■□ 3.54
LIG3-208ENST00000586407 EIF5P55010 431 aaKnown RBP37.17■■■■□ 3.54
LIG3-208ENST00000586407 BCL2L12Q9HB09 334 aa37.17■■■■□ 3.54
LIG3-208ENST00000586407 AFDNP55196 1824 aaKnown RBP37.15■■■■□ 3.54
LIG3-208ENST00000586407 SCN7AQ01118 1682 aa37.14■■■■□ 3.54
LIG3-208ENST00000586407 RRP7AQ9Y3A4 280 aaKnown RBP37.13■■■■□ 3.53
LIG3-208ENST00000586407 UTRNP46939 3433 aa37.13■■■■□ 3.53
LIG3-208ENST00000586407 POLRMTO00411 1230 aaKnown RBP37.12■■■■□ 3.53
LIG3-208ENST00000586407 TM4SF1P30408 202 aa37.12■■■■□ 3.53
LIG3-208ENST00000586407 A0A0G2JLW4 131 aa37.11■■■■□ 3.53
LIG3-208ENST00000586407 SNRPA1P09661 255 aaKnown RBP37.11■■■■□ 3.53
LIG3-208ENST00000586407 NFIXQ14938 502 aa37.11■■■■□ 3.53
LIG3-208ENST00000586407 WDR43Q15061 677 aaKnown RBP eCLIP37.11■■■■□ 3.53
LIG3-208ENST00000586407 TBC1D2BQ9UPU7 963 aa37.11■■■■□ 3.53
LIG3-208ENST00000586407 LAMB4A4D0S4 1761 aa37.1■■■■□ 3.53
LIG3-208ENST00000586407 RIPK4P57078 832 aa37.1■■■■□ 3.53
LIG3-208ENST00000586407 GRIN3BO60391 1043 aa37.08■■■■□ 3.53
LIG3-208ENST00000586407 DPEP1P16444 411 aa37.08■■■■□ 3.53
LIG3-208ENST00000586407 IL6STP40189 918 aaPredicted RBP37.08■■■■□ 3.53
LIG3-208ENST00000586407 TMPOP42166 694 aaKnown RBP37.08■■■■□ 3.53
LIG3-208ENST00000586407 BRCA1P38398 1863 aaKnown RBP37.07■■■■□ 3.53
LIG3-208ENST00000586407 A0A087WZG4 1122 aa37.07■■■■□ 3.52
LIG3-208ENST00000586407 ADAMTS8Q9UP79 889 aa37.07■■■■□ 3.52
LIG3-208ENST00000586407 BICDL1Q6ZP65 573 aa37.06■■■■□ 3.52
LIG3-208ENST00000586407 BCORQ6W2J9 1755 aa37.06■■■■□ 3.52
LIG3-208ENST00000586407 GOLGB1Q14789 3259 aaKnown RBP37.05■■■■□ 3.52
LIG3-208ENST00000586407 NRXN2Q9P2S2 1712 aa37.05■■■■□ 3.52
LIG3-208ENST00000586407 ZNF316A6NFI3 1004 aaPredicted RBP37.05■■■■□ 3.52
LIG3-208ENST00000586407 TGFB2P61812 414 aa37.05■■■■□ 3.52
LIG3-208ENST00000586407 NEUROD2Q15784 382 aa37.05■■■■□ 3.52
LIG3-208ENST00000586407 PNISRQ8TF01 805 aaKnown RBP37.03■■■■□ 3.52
LIG3-208ENST00000586407 NBPF26B4DH59 902 aa37.02■■■■□ 3.52
LIG3-208ENST00000586407 NBPF10Q6P3W6 841 aaKnown RBP37.02■■■■□ 3.52
LIG3-208ENST00000586407 NBPF15Q8N660 670 aa37.02■■■■□ 3.52
LIG3-208ENST00000586407 ZNF784Q8NCA9 323 aaPredicted RBP37.02■■■■□ 3.52
LIG3-208ENST00000586407 EIF4A1P60842 406 aaKnown RBP37.01■■■■□ 3.52
LIG3-208ENST00000586407 TBC1D9BQ66K14 1250 aa37.01■■■■□ 3.52
LIG3-208ENST00000586407 RUNDC1Q96C34 613 aa37.01■■■■□ 3.52
LIG3-208ENST00000586407 CAMTA2O94983 1202 aa36.99■■■■□ 3.51
LIG3-208ENST00000586407 SERPINB2P05120 415 aa36.99■■■■□ 3.51
LIG3-208ENST00000586407 CHRNA5P30532 468 aa36.99■■■■□ 3.51
LIG3-208ENST00000586407 NPM2Q86SE8 214 aaKnown RBP36.99■■■■□ 3.51
LIG3-208ENST00000586407 DZIP3Q86Y13 1208 aaKnown RBP36.99■■■■□ 3.51
LIG3-208ENST00000586407 BCS1LQ9Y276 419 aa36.99■■■■□ 3.51
LIG3-208ENST00000586407 CARMIL3Q8ND23 1372 aa36.97■■■■□ 3.51
LIG3-208ENST00000586407 KCNA3P22001 575 aa36.97■■■■□ 3.51
LIG3-208ENST00000586407 CCDC184Q52MB2 194 aa36.97■■■■□ 3.51
LIG3-208ENST00000586407 GIGYF1O75420 1035 aaPredicted RBP36.96■■■■□ 3.51
LIG3-208ENST00000586407 TSPYL4Q9UJ04 414 aa36.96■■■■□ 3.51
LIG3-208ENST00000586407 LMOD3Q0VAK6 560 aa36.94■■■■□ 3.5
LIG3-208ENST00000586407 ANKRD31Q8N7Z5 1873 aa36.93■■■■□ 3.5
LIG3-208ENST00000586407 TRIM35Q9UPQ4 493 aa36.93■■■■□ 3.5
LIG3-208ENST00000586407 CCDC24Q8N4L8 307 aa36.92■■■■□ 3.5
LIG3-208ENST00000586407 ARFGEF1Q9Y6D6 1849 aa36.92■■■■□ 3.5
LIG3-208ENST00000586407 NGEFQ8N5V2 710 aa36.9■■■■□ 3.5
LIG3-208ENST00000586407 DLEC1Q9Y238 1755 aa36.89■■■■□ 3.5
LIG3-208ENST00000586407 PIM2Q9P1W9 311 aa36.88■■■■□ 3.49
LIG3-208ENST00000586407 LAS1LQ9Y4W2 734 aaKnown RBP36.86■■■■□ 3.49
LIG3-208ENST00000586407 MYL6BP14649 208 aa36.84■■■■□ 3.49
LIG3-208ENST00000586407 PRR5LQ6MZQ0 368 aa36.84■■■■□ 3.49
LIG3-208ENST00000586407 SETDB2Q96T68 719 aa36.84■■■■□ 3.49
LIG3-208ENST00000586407 COL11A2P13942 1736 aaPredicted RBP36.83■■■■□ 3.49
LIG3-208ENST00000586407 APAF1O14727 1248 aa36.83■■■■□ 3.49
LIG3-208ENST00000586407 HLFQ16534 295 aa36.82■■■■□ 3.48
LIG3-208ENST00000586407 DALRD3Q5D0E6 543 aaKnown RBP36.82■■■■□ 3.48
LIG3-208ENST00000586407 ARHGAP27Q6ZUM4 889 aa36.82■■■■□ 3.48
LIG3-208ENST00000586407 KRT24Q2M2I5 525 aa36.81■■■■□ 3.48
LIG3-208ENST00000586407 C2CD5Q86YS7 1000 aa36.81■■■■□ 3.48
LIG3-208ENST00000586407 ATP10DQ9P241 1426 aa36.81■■■■□ 3.48
LIG3-208ENST00000586407 NUP98P52948 1817 aa36.8■■■■□ 3.48
LIG3-208ENST00000586407 SENP3-EIF4A1A0A087X0R7 540 aa36.8■■■■□ 3.48
LIG3-208ENST00000586407 EIF2S2P20042 333 aaKnown RBP36.8■■■■□ 3.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms