RNA–Protein interactions for RNA: ENST00000584944.5

TRAF4-215, Transcript of TNF receptor associated factor 4, humanhuman

TSL 2

Gene TRAF4, Length 825 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-215ENST00000584944 IFT57Q9NWB7 429 aa18■□□□□ 0.47
TRAF4-215ENST00000584944 VIRMAQ69YN4 1812 aaKnown RBP18■□□□□ 0.47
TRAF4-215ENST00000584944 YBX3P16989 372 aaKnown RBP eCLIP17.99■□□□□ 0.471e-7■■□□□ 13.9
TRAF4-215ENST00000584944 WDR63Q8IWG1 891 aa17.99■□□□□ 0.47
TRAF4-215ENST00000584944 ZNF496Q96IT1 587 aaPredicted RBP17.99■□□□□ 0.47
TRAF4-215ENST00000584944 SNRPA1P09661 255 aaKnown RBP17.98■□□□□ 0.47
TRAF4-215ENST00000584944 VSIG10Q8N0Z9 540 aa17.98■□□□□ 0.47
TRAF4-215ENST00000584944 MYH16Q9H6N6 1097 aa17.98■□□□□ 0.47
TRAF4-215ENST00000584944 CD2APQ9Y5K6 639 aa17.98■□□□□ 0.47
TRAF4-215ENST00000584944 UBR3Q6ZT12 1888 aa17.98■□□□□ 0.47
TRAF4-215ENST00000584944 GRIN3BO60391 1043 aa17.97■□□□□ 0.47
TRAF4-215ENST00000584944 SMIM5Q71RC9 77 aa17.97■□□□□ 0.47
TRAF4-215ENST00000584944 IL16Q14005 1332 aa17.97■□□□□ 0.47
TRAF4-215ENST00000584944 HEG1Q9ULI3 1381 aa17.96■□□□□ 0.47
TRAF4-215ENST00000584944 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.96■□□□□ 0.47
TRAF4-215ENST00000584944 CHL1O00533 1208 aa17.96■□□□□ 0.47
TRAF4-215ENST00000584944 KCNQ3O43525 872 aa17.96■□□□□ 0.47
TRAF4-215ENST00000584944 C1QTNF8P60827 252 aa17.96■□□□□ 0.47
TRAF4-215ENST00000584944 LINC00116Q8NCU8 138 aa17.96■□□□□ 0.47
TRAF4-215ENST00000584944 GNPATO15228 680 aa17.95■□□□□ 0.46
TRAF4-215ENST00000584944 SSFA2P28290 1259 aa17.95■□□□□ 0.46
TRAF4-215ENST00000584944 GOLGA2Q08379 1002 aa17.95■□□□□ 0.46
TRAF4-215ENST00000584944 ITPK1Q13572 414 aa17.95■□□□□ 0.46
TRAF4-215ENST00000584944 DNAJC10Q8IXB1 793 aa17.95■□□□□ 0.46
TRAF4-215ENST00000584944 PHF14O94880 888 aa17.94■□□□□ 0.46
TRAF4-215ENST00000584944 CHMP4AQ9BY43 222 aa17.94■□□□□ 0.46
TRAF4-215ENST00000584944 MBIPQ9NS73 344 aa17.94■□□□□ 0.46
TRAF4-215ENST00000584944 SIPA1L3O60292 1781 aaPredicted RBP17.94■□□□□ 0.46
TRAF4-215ENST00000584944 EIF4A1P60842 406 aaKnown RBP17.93■□□□□ 0.46
TRAF4-215ENST00000584944 CCDC87Q9NVE4 849 aa17.93■□□□□ 0.46
TRAF4-215ENST00000584944 RTCBQ9Y3I0 505 aaKnown RBP17.93■□□□□ 0.46
TRAF4-215ENST00000584944 ZNF330Q9Y3S2 320 aaPredicted RBP17.93■□□□□ 0.46
TRAF4-215ENST00000584944 KCPQ6ZWJ8 1503 aa17.93■□□□□ 0.46
TRAF4-215ENST00000584944 CRKLP46109 303 aaKnown RBP17.92■□□□□ 0.46
TRAF4-215ENST00000584944 RC3H1Q5TC82 1133 aaKnown RBP17.91■□□□□ 0.46
TRAF4-215ENST00000584944 TSR2Q969E8 191 aaKnown RBP17.91■□□□□ 0.46
TRAF4-215ENST00000584944 SLC4A9Q96Q91 983 aa17.91■□□□□ 0.46
TRAF4-215ENST00000584944 CNTNAP4Q9C0A0 1308 aa17.91■□□□□ 0.46
TRAF4-215ENST00000584944 E9PSI1 815 aa17.9■□□□□ 0.46
TRAF4-215ENST00000584944 GIGYF1O75420 1035 aaPredicted RBP17.9■□□□□ 0.46
TRAF4-215ENST00000584944 EIF2S2P20042 333 aaKnown RBP17.9■□□□□ 0.46
TRAF4-215ENST00000584944 CANXP27824 592 aaKnown RBP17.9■□□□□ 0.46
TRAF4-215ENST00000584944 ZNF853P0CG23 659 aa17.89■□□□□ 0.45
TRAF4-215ENST00000584944 CYP19A1P11511 503 aaPredicted RBP17.89■□□□□ 0.45
TRAF4-215ENST00000584944 TRAPPC3LQ5T215 181 aa17.89■□□□□ 0.45
TRAF4-215ENST00000584944 ELL2O00472 640 aaPredicted RBP17.88■□□□□ 0.45
TRAF4-215ENST00000584944 RFC4P35249 363 aa17.88■□□□□ 0.45
TRAF4-215ENST00000584944 DUSP27Q5VZP5 1158 aa17.88■□□□□ 0.45
TRAF4-215ENST00000584944 FANCIQ9NVI1 1328 aa17.88■□□□□ 0.45
TRAF4-215ENST00000584944 UBR2Q8IWV8 1755 aa17.88■□□□□ 0.45
TRAF4-215ENST00000584944 ZNF831Q5JPB2 1677 aa17.87■□□□□ 0.45
TRAF4-215ENST00000584944 KDM3BQ7LBC6 1761 aa17.87■□□□□ 0.45
TRAF4-215ENST00000584944 HOXB7P09629 217 aa17.87■□□□□ 0.45
TRAF4-215ENST00000584944 HDGFL1Q5TGJ6 251 aa17.87■□□□□ 0.45
TRAF4-215ENST00000584944 NECTIN2Q92692 538 aa17.87■□□□□ 0.45
TRAF4-215ENST00000584944 YTHDC1Q96MU7 727 aaKnown RBP17.87■□□□□ 0.45
TRAF4-215ENST00000584944 USP16Q9Y5T5 823 aa17.87■□□□□ 0.45
TRAF4-215ENST00000584944 A0A087WZG4 1122 aa17.86■□□□□ 0.45
TRAF4-215ENST00000584944 RPS6KA4O75676 772 aa17.86■□□□□ 0.45
TRAF4-215ENST00000584944 ADRA2BP18089 450 aa17.86■□□□□ 0.45
TRAF4-215ENST00000584944 PRAMEF22A3QJZ6 481 aa17.85■□□□□ 0.45
TRAF4-215ENST00000584944 ZPR1O75312 459 aa17.85■□□□□ 0.45
TRAF4-215ENST00000584944 A1BGP04217 495 aa17.85■□□□□ 0.45
TRAF4-215ENST00000584944 SOS1Q07889 1333 aaPredicted RBP17.85■□□□□ 0.45
TRAF4-215ENST00000584944 ZNF521Q96K83 1311 aa17.84■□□□□ 0.45
TRAF4-215ENST00000584944 MYL6BP14649 208 aa17.84■□□□□ 0.45
TRAF4-215ENST00000584944 KRT24Q2M2I5 525 aa17.84■□□□□ 0.45
TRAF4-215ENST00000584944 TWISTNBQ3B726 338 aaPredicted RBP17.84■□□□□ 0.45
TRAF4-215ENST00000584944 INTS5Q6P9B9 1019 aaKnown RBP17.84■□□□□ 0.45
TRAF4-215ENST00000584944 STK31Q9BXU1 1019 aa17.84■□□□□ 0.45
TRAF4-215ENST00000584944 ZBTB1Q9Y2K1 713 aa17.84■□□□□ 0.45
TRAF4-215ENST00000584944 TJP1Q07157 1748 aa17.84■□□□□ 0.45
TRAF4-215ENST00000584944 ATP10DQ9P241 1426 aa17.83■□□□□ 0.45
TRAF4-215ENST00000584944 ZBED9Q6R2W3 1325 aa17.83■□□□□ 0.44
TRAF4-215ENST00000584944 MMP10P09238 476 aa17.83■□□□□ 0.44
TRAF4-215ENST00000584944 IL6STP40189 918 aaPredicted RBP17.83■□□□□ 0.44
TRAF4-215ENST00000584944 CCDC30Q5VVM6 783 aa17.83■□□□□ 0.44
TRAF4-215ENST00000584944 C8orf58Q8NAV2 365 aa17.83■□□□□ 0.44
TRAF4-215ENST00000584944 ADCY9O60503 1353 aa17.82■□□□□ 0.44
TRAF4-215ENST00000584944 ERBB4Q15303 1308 aa17.82■□□□□ 0.44
TRAF4-215ENST00000584944 PIP4K2AP48426 406 aaPredicted RBP17.82■□□□□ 0.44
TRAF4-215ENST00000584944 EXOSC9Q06265 439 aaKnown RBP17.82■□□□□ 0.44
TRAF4-215ENST00000584944 KIF6Q6ZMV9 814 aa17.82■□□□□ 0.44
TRAF4-215ENST00000584944 ARHGEF1Q92888 912 aaKnown RBP17.82■□□□□ 0.44
TRAF4-215ENST00000584944 WWC3Q9ULE0 1092 aa17.82■□□□□ 0.44
TRAF4-215ENST00000584944 COL5A3P25940 1745 aaPredicted RBP17.81■□□□□ 0.44
TRAF4-215ENST00000584944 COL15A1P39059 1388 aa17.81■□□□□ 0.44
TRAF4-215ENST00000584944 MYH14Q7Z406 1995 aaKnown RBP17.81■□□□□ 0.44
TRAF4-215ENST00000584944 SLFN5Q08AF3 891 aa17.81■□□□□ 0.44
TRAF4-215ENST00000584944 NLGN1Q8N2Q7 840 aa17.81■□□□□ 0.44
TRAF4-215ENST00000584944 DBF4Q9UBU7 674 aaPredicted RBP17.81■□□□□ 0.44
TRAF4-215ENST00000584944 CICQ96RK0 1608 aaPredicted RBP17.8■□□□□ 0.44
TRAF4-215ENST00000584944 KIF13BQ9NQT8 1826 aa17.8■□□□□ 0.44
TRAF4-215ENST00000584944 CDCA7LQ96GN5 454 aa17.8■□□□□ 0.44
TRAF4-215ENST00000584944 SPINK5Q9NQ38 1064 aaPredicted RBP17.8■□□□□ 0.44
TRAF4-215ENST00000584944 GYS1P13807 737 aa17.79■□□□□ 0.44
TRAF4-215ENST00000584944 DZIP3Q86Y13 1208 aaKnown RBP17.79■□□□□ 0.44
TRAF4-215ENST00000584944 HYPKQ9NX55 129 aa17.79■□□□□ 0.44
TRAF4-215ENST00000584944 CHPF2Q9P2E5 772 aa17.79■□□□□ 0.44
TRAF4-215ENST00000584944 PXDNLA1KZ92 1463 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms