RNA–Protein interactions for RNA: ENST00000584582.5

TOP3A-217, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 5

Gene TOP3A, Length 3,661 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-217ENST00000584582 ZKSCAN1P17029 563 aaPredicted RBP13.67□□□□□ -0.22
TOP3A-217ENST00000584582 AKAP4Q5JQC9 854 aa13.67□□□□□ -0.22
TOP3A-217ENST00000584582 USP26Q9BXU7 913 aa13.67□□□□□ -0.22
TOP3A-217ENST00000584582 IGSF1Q8N6C5 1336 aa13.67□□□□□ -0.22
TOP3A-217ENST00000584582 PREX1Q8TCU6 1659 aa13.67□□□□□ -0.22
TOP3A-217ENST00000584582 RNMTO43148 476 aaKnown RBP13.67□□□□□ -0.22
TOP3A-217ENST00000584582 ARID3AQ99856 593 aa13.67□□□□□ -0.22
TOP3A-217ENST00000584582 TMEM131LA2VDJ0 1609 aa13.67□□□□□ -0.22
TOP3A-217ENST00000584582 FIBPO43427 364 aa13.66□□□□□ -0.22
TOP3A-217ENST00000584582 EIF4A1P60842 406 aaKnown RBP13.66□□□□□ -0.22
TOP3A-217ENST00000584582 JAKMIP1Q96N16 626 aaKnown RBP13.66□□□□□ -0.22
TOP3A-217ENST00000584582 FERMT3Q86UX7 667 aa13.66□□□□□ -0.22
TOP3A-217ENST00000584582 RBM27Q9P2N5 1060 aaKnown RBP13.66□□□□□ -0.22
TOP3A-217ENST00000584582 SMC3Q9UQE7 1217 aa13.66□□□□□ -0.22
TOP3A-217ENST00000584582 HDAC5Q9UQL6 1122 aa13.66□□□□□ -0.22
TOP3A-217ENST00000584582 A0A087WZG4 1122 aa13.66□□□□□ -0.22
TOP3A-217ENST00000584582 CASTP20810 708 aaKnown RBP13.66□□□□□ -0.22
TOP3A-217ENST00000584582 NCBP3Q53F19 620 aaKnown RBP13.66□□□□□ -0.22
TOP3A-217ENST00000584582 RUFY2Q8WXA3 655 aa13.66□□□□□ -0.22
TOP3A-217ENST00000584582 ADAMTS13Q76LX8 1427 aa13.66□□□□□ -0.22
TOP3A-217ENST00000584582 C19orf44Q9H6X5 657 aa13.65□□□□□ -0.22
TOP3A-217ENST00000584582 PTPRUQ92729 1446 aa13.65□□□□□ -0.22
TOP3A-217ENST00000584582 DNTTIP2Q5QJE6 756 aaKnown RBP13.65□□□□□ -0.22
TOP3A-217ENST00000584582 CDK12Q9NYV4 1490 aaPredicted RBP13.65□□□□□ -0.23
TOP3A-217ENST00000584582 NUTM2BA6NNL0 878 aaPredicted RBP13.65□□□□□ -0.23
TOP3A-217ENST00000584582 NUTM2EB1AL46 878 aaPredicted RBP13.65□□□□□ -0.23
TOP3A-217ENST00000584582 RBM25P49756 843 aaKnown RBP13.65□□□□□ -0.23
TOP3A-217ENST00000584582 NUTM2AQ8IVF1 878 aaPredicted RBP13.65□□□□□ -0.23
TOP3A-217ENST00000584582 ESYT1Q9BSJ8 1104 aa13.65□□□□□ -0.23
TOP3A-217ENST00000584582 ARHGEF28Q8N1W1 1705 aaKnown RBP13.64□□□□□ -0.23
TOP3A-217ENST00000584582 STK11IPQ8N1F8 1099 aa13.64□□□□□ -0.23
TOP3A-217ENST00000584582 PALD1Q9ULE6 856 aa13.64□□□□□ -0.23
TOP3A-217ENST00000584582 GPTP24298 496 aa13.63□□□□□ -0.23
TOP3A-217ENST00000584582 EDC3Q96F86 508 aaKnown RBP13.63□□□□□ -0.23
TOP3A-217ENST00000584582 TMX3Q96JJ7 454 aa13.63□□□□□ -0.23
TOP3A-217ENST00000584582 CCDC83Q8IWF9 413 aa13.63□□□□□ -0.23
TOP3A-217ENST00000584582 ZNF496Q96IT1 587 aaPredicted RBP13.63□□□□□ -0.23
TOP3A-217ENST00000584582 USP16Q9Y5T5 823 aa13.63□□□□□ -0.23
TOP3A-217ENST00000584582 SOS1Q07889 1333 aaPredicted RBP13.63□□□□□ -0.23
TOP3A-217ENST00000584582 BAG4O95429 457 aaKnown RBP13.63□□□□□ -0.23
TOP3A-217ENST00000584582 GRPEL1Q9HAV7 217 aa13.63□□□□□ -0.23
TOP3A-217ENST00000584582 SNRKQ9NRH2 765 aa13.63□□□□□ -0.23
TOP3A-217ENST00000584582 DIP2BQ9P265 1576 aa13.63□□□□□ -0.23
TOP3A-217ENST00000584582 CEBPZQ03701 1054 aaKnown RBP13.62□□□□□ -0.23
TOP3A-217ENST00000584582 ADAMTS2O95450 1211 aa13.62□□□□□ -0.23
TOP3A-217ENST00000584582 CHMLP26374 656 aa13.62□□□□□ -0.23
TOP3A-217ENST00000584582 FKBP4Q02790 459 aaKnown RBP eCLIP13.62□□□□□ -0.23
TOP3A-217ENST00000584582 WASHC4Q2M389 1173 aa13.62□□□□□ -0.23
TOP3A-217ENST00000584582 IFNL2Q8IZJ0 200 aa13.62□□□□□ -0.23
TOP3A-217ENST00000584582 BICC1Q9H694 974 aaKnown RBP13.62□□□□□ -0.23
TOP3A-217ENST00000584582 ANTXR1Q9H6X2 564 aa13.62□□□□□ -0.23
TOP3A-217ENST00000584582 TOMM22Q9NS69 142 aa13.62□□□□□ -0.23
TOP3A-217ENST00000584582 ARHGEF10O15013 1369 aa13.62□□□□□ -0.23
TOP3A-217ENST00000584582 XRCC6P12956 609 aaKnown RBP eCLIP13.62□□□□□ -0.23
TOP3A-217ENST00000584582 SKOR2Q2VWA4 1001 aaPredicted RBP13.62□□□□□ -0.23
TOP3A-217ENST00000584582 ANKRD13DQ6ZTN6 518 aa13.62□□□□□ -0.23
TOP3A-217ENST00000584582 FBXW7Q969H0 707 aa13.62□□□□□ -0.23
TOP3A-217ENST00000584582 GRM8O00222 908 aa13.61□□□□□ -0.23
TOP3A-217ENST00000584582 KSR2Q6VAB6 950 aa13.61□□□□□ -0.23
TOP3A-217ENST00000584582 HTATSF1O43719 755 aaKnown RBP13.61□□□□□ -0.23
TOP3A-217ENST00000584582 NASPP49321 788 aaPredicted RBP13.61□□□□□ -0.23
TOP3A-217ENST00000584582 LARP1Q6PKG0 1096 aaKnown RBP13.61□□□□□ -0.23
TOP3A-217ENST00000584582 NECAB1Q8N987 351 aa13.61□□□□□ -0.23
TOP3A-217ENST00000584582 GLRX3O76003 335 aaKnown RBP13.61□□□□□ -0.23
TOP3A-217ENST00000584582 APPP05067 770 aa13.61□□□□□ -0.23
TOP3A-217ENST00000584582 MSNP26038 577 aaKnown RBP13.61□□□□□ -0.23
TOP3A-217ENST00000584582 ZNF790Q6PG37 636 aa13.61□□□□□ -0.23
TOP3A-217ENST00000584582 DDX46Q7L014 1031 aaKnown RBP13.6□□□□□ -0.23
TOP3A-217ENST00000584582 HYPKQ9NX55 129 aa13.6□□□□□ -0.23
TOP3A-217ENST00000584582 KIAA0232Q92628 1395 aa13.6□□□□□ -0.23
TOP3A-217ENST00000584582 COL3A1P02461 1466 aaPredicted RBP13.6□□□□□ -0.23
TOP3A-217ENST00000584582 SYCE3A1L190 88 aa13.6□□□□□ -0.23
TOP3A-217ENST00000584582 MRE11P49959 708 aa13.6□□□□□ -0.23
TOP3A-217ENST00000584582 LRRC2Q9BYS8 371 aa13.6□□□□□ -0.23
TOP3A-217ENST00000584582 ECHDC1Q9NTX5 307 aa13.6□□□□□ -0.23
TOP3A-217ENST00000584582 BRPF1P55201 1214 aaPredicted RBP13.6□□□□□ -0.23
TOP3A-217ENST00000584582 RICTORQ6R327 1708 aa13.59□□□□□ -0.23
TOP3A-217ENST00000584582 GIGYF1O75420 1035 aaPredicted RBP13.59□□□□□ -0.23
TOP3A-217ENST00000584582 A1BGP04217 495 aa13.59□□□□□ -0.23
TOP3A-217ENST00000584582 SUCLG2Q96I99 432 aa13.59□□□□□ -0.23
TOP3A-217ENST00000584582 MAP2P11137 1827 aaKnown RBP13.59□□□□□ -0.23
TOP3A-217ENST00000584582 ARHGEF25Q86VW2 580 aa13.59□□□□□ -0.23
TOP3A-217ENST00000584582 DDX11Q96FC9 970 aa13.59□□□□□ -0.23
TOP3A-217ENST00000584582 SNX21Q969T3 373 aa13.59□□□□□ -0.23
TOP3A-217ENST00000584582 RAB11FIP3O75154 756 aa13.58□□□□□ -0.24
TOP3A-217ENST00000584582 LMBR1LQ6UX01 489 aa13.58□□□□□ -0.24
TOP3A-217ENST00000584582 CADPS2Q86UW7 1296 aa13.58□□□□□ -0.24
TOP3A-217ENST00000584582 FMNL2Q96PY5 1086 aa13.58□□□□□ -0.24
TOP3A-217ENST00000584582 CIZ1Q9ULV3 898 aaPredicted RBP13.58□□□□□ -0.24
TOP3A-217ENST00000584582 H3BQV1 296 aa13.58□□□□□ -0.24
TOP3A-217ENST00000584582 GTF2E1P29083 439 aaPredicted RBP13.58□□□□□ -0.24
TOP3A-217ENST00000584582 IFFO2Q5TF58 517 aa13.58□□□□□ -0.24
TOP3A-217ENST00000584582 PDRG1Q9NUG6 133 aa13.58□□□□□ -0.24
TOP3A-217ENST00000584582 CYP46A1Q9Y6A2 500 aa13.58□□□□□ -0.24
TOP3A-217ENST00000584582 PIP4K2BP78356 416 aa13.57□□□□□ -0.24
TOP3A-217ENST00000584582 FAM184AQ8NB25 1140 aa13.57□□□□□ -0.24
TOP3A-217ENST00000584582 SNRPA1P09661 255 aaKnown RBP13.57□□□□□ -0.24
TOP3A-217ENST00000584582 ERC1Q8IUD2 1116 aa13.57□□□□□ -0.24
TOP3A-217ENST00000584582 FAM227BQ96M60 508 aa13.57□□□□□ -0.24
TOP3A-217ENST00000584582 PTCH1Q13635 1447 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms