RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	GNE	Q9Y223	722 aa	Known RBP	7.79	□□□□□ -1.16
SS18-223	ENST00000583595	SMTN	P53814	917 aa		7.78	□□□□□ -1.16
SS18-223	ENST00000583595	NUCKS1	Q9H1E3	243 aa	Known RBP	7.78	□□□□□ -1.16
SS18-223	ENST00000583595	USP35	Q9P2H5	1018 aa		7.78	□□□□□ -1.16
SS18-223	ENST00000583595	ADAMTS2	O95450	1211 aa		7.77	□□□□□ -1.17
SS18-223	ENST00000583595	SLURP2	P0DP57	97 aa		7.77	□□□□□ -1.17
SS18-223	ENST00000583595	MSX1	P28360	303 aa		7.77	□□□□□ -1.17
SS18-223	ENST00000583595	PSME1	Q06323	249 aa		7.77	□□□□□ -1.17
SS18-223	ENST00000583595	SLC4A9	Q96Q91	983 aa		7.77	□□□□□ -1.17
SS18-223	ENST00000583595	ATP9B	O43861	1147 aa		7.76	□□□□□ -1.17
SS18-223	ENST00000583595	PLA2G4A	P47712	749 aa		7.76	□□□□□ -1.17
SS18-223	ENST00000583595	SRSF11	Q05519	484 aa	Known RBP	7.76	□□□□□ -1.17
SS18-223	ENST00000583595	TMEM164	Q5U3C3	297 aa		7.76	□□□□□ -1.17
SS18-223	ENST00000583595	ZNF385C	Q66K41	422 aa	Predicted RBP	7.76	□□□□□ -1.17
SS18-223	ENST00000583595	PHLDB3	Q6NSJ2	640 aa		7.76	□□□□□ -1.17
SS18-223	ENST00000583595	WHAMM	Q8TF30	809 aa		7.76	□□□□□ -1.17
SS18-223	ENST00000583595	TRERF1	Q96PN7	1200 aa		7.76	□□□□□ -1.17
SS18-223	ENST00000583595	NIFK	Q9BYG3	293 aa	Known RBP	7.76	□□□□□ -1.17
SS18-223	ENST00000583595	RUBCNL	Q9H714	662 aa		7.76	□□□□□ -1.17
SS18-223	ENST00000583595	USP17L3	A6NCW0	530 aa		7.75	□□□□□ -1.17
SS18-223	ENST00000583595	USP17L4	A6NCW7	530 aa		7.75	□□□□□ -1.17
SS18-223	ENST00000583595		A6NJY4	79 aa		7.75	□□□□□ -1.17
SS18-223	ENST00000583595	THBS1	P07996	1170 aa		7.75	□□□□□ -1.17
SS18-223	ENST00000583595	USP17L2	Q6R6M4	530 aa		7.75	□□□□□ -1.17
SS18-223	ENST00000583595	USP17L1	Q7RTZ2	530 aa		7.75	□□□□□ -1.17
SS18-223	ENST00000583595	TXNDC2	Q86VQ3	553 aa		7.75	□□□□□ -1.17
SS18-223	ENST00000583595	PGBD3	Q8N328	593 aa		7.75	□□□□□ -1.17
SS18-223	ENST00000583595	MBIP	Q9NS73	344 aa		7.75	□□□□□ -1.17
SS18-223	ENST00000583595	ZMIZ1	Q9ULJ6	1067 aa		7.75	□□□□□ -1.17
SS18-223	ENST00000583595	RBM47	A0AV96	593 aa	Known RBP	7.74	□□□□□ -1.17
SS18-223	ENST00000583595	CDK2AP1	O14519	115 aa		7.74	□□□□□ -1.17
SS18-223	ENST00000583595	BACH1	O14867	736 aa		7.74	□□□□□ -1.17
SS18-223	ENST00000583595	MTFR1	Q15390	333 aa		7.74	□□□□□ -1.17
SS18-223	ENST00000583595	TRIM50	Q86XT4	487 aa		7.74	□□□□□ -1.17
SS18-223	ENST00000583595	PLEKHM2	Q8IWE5	1019 aa		7.74	□□□□□ -1.17
SS18-223	ENST00000583595	SVOP	Q8N4V2	548 aa		7.74	□□□□□ -1.17
SS18-223	ENST00000583595	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	7.74	□□□□□ -1.17
SS18-223	ENST00000583595	STK32A	Q8WU08	396 aa		7.74	□□□□□ -1.17
SS18-223	ENST00000583595	CCER1	Q8TC90	406 aa	Predicted RBP	7.73	□□□□□ -1.17
SS18-223	ENST00000583595	AIDA	Q96BJ3	306 aa		7.73	□□□□□ -1.17
SS18-223	ENST00000583595	ZNF358	Q9NW07	568 aa		7.73	□□□□□ -1.17
SS18-223	ENST00000583595	ADAMTS8	Q9UP79	889 aa		7.73	□□□□□ -1.17
SS18-223	ENST00000583595	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	7.73	□□□□□ -1.17
SS18-223	ENST00000583595	USP3	Q9Y6I4	520 aa		7.73	□□□□□ -1.17
SS18-223	ENST00000583595	IGF1R	P08069	1367 aa		7.72	□□□□□ -1.17
SS18-223	ENST00000583595	MX2	P20592	715 aa		7.72	□□□□□ -1.17
SS18-223	ENST00000583595	ELOA	Q14241	798 aa	Known RBP	7.72	□□□□□ -1.17
SS18-223	ENST00000583595	EFHC2	Q5JST6	749 aa		7.72	□□□□□ -1.17
SS18-223	ENST00000583595	LYPD4	Q6UWN0	246 aa		7.72	□□□□□ -1.17
SS18-223	ENST00000583595	ZNF295-AS1	Q8N0V1	137 aa		7.72	□□□□□ -1.17
SS18-223	ENST00000583595	CFHR5	Q9BXR6	569 aa		7.72	□□□□□ -1.17
SS18-223	ENST00000583595	MKRN1	Q9UHC7	482 aa	Known RBP	7.72	□□□□□ -1.17
SS18-223	ENST00000583595	ZBTB7B	O15156	539 aa	Predicted RBP	7.71	□□□□□ -1.18
SS18-223	ENST00000583595	ATP1A2	P50993	1020 aa		7.71	□□□□□ -1.18
SS18-223	ENST00000583595	CLDN10	P78369	228 aa		7.71	□□□□□ -1.18
SS18-223	ENST00000583595	LBR	Q14739	615 aa	Known RBP	7.71	□□□□□ -1.18
SS18-223	ENST00000583595	TPCN2	Q8NHX9	752 aa		7.71	□□□□□ -1.18
SS18-223	ENST00000583595	CRISPLD1	Q9H336	500 aa		7.71	□□□□□ -1.18
SS18-223	ENST00000583595	IGSF5	Q9NSI5	407 aa		7.71	□□□□□ -1.18
SS18-223	ENST00000583595	DNAAF2	Q9NVR5	837 aa	Known RBP	7.71	□□□□□ -1.18
SS18-223	ENST00000583595	CABP1	Q9NZU7	370 aa		7.71	□□□□□ -1.18
SS18-223	ENST00000583595	KIAA1522	Q9P206	1035 aa	Predicted RBP	7.71	□□□□□ -1.18
SS18-223	ENST00000583595	SLAIN2	Q9P270	581 aa		7.71	□□□□□ -1.18
SS18-223	ENST00000583595	NOVA2	Q9UNW9	492 aa	Known RBP	7.71	□□□□□ -1.18
SS18-223	ENST00000583595	KIAA1024	Q9UPX6	916 aa		7.71	□□□□□ -1.18
SS18-223	ENST00000583595	ARHGEF15	O94989	841 aa		7.7	□□□□□ -1.18
SS18-223	ENST00000583595	CELA2B	P08218	269 aa	Predicted RBP	7.7	□□□□□ -1.18
SS18-223	ENST00000583595	ATP4A	P20648	1035 aa		7.7	□□□□□ -1.18
SS18-223	ENST00000583595	UBAP2L	Q14157	1087 aa	Known RBP	7.7	□□□□□ -1.18
SS18-223	ENST00000583595	NOM1	Q5C9Z4	860 aa	Known RBP	7.7	□□□□□ -1.18
SS18-223	ENST00000583595	CCDC102B	Q68D86	513 aa		7.7	□□□□□ -1.18
SS18-223	ENST00000583595	B4GALNT3	Q6L9W6	998 aa		7.7	□□□□□ -1.18
SS18-223	ENST00000583595	TNS4	Q8IZW8	715 aa		7.7	□□□□□ -1.18
SS18-223	ENST00000583595	OGFOD1	Q8N543	542 aa		7.7	□□□□□ -1.18
SS18-223	ENST00000583595	C1orf216	Q8TAB5	229 aa		7.7	□□□□□ -1.18
SS18-223	ENST00000583595	SCHIP1	Q9P0W5	487 aa	Predicted RBP	7.7	□□□□□ -1.18
SS18-223	ENST00000583595	NSFL1C	Q9UNZ2	370 aa	Known RBP	7.7	□□□□□ -1.18
SS18-223	ENST00000583595	PHF24	Q9UPV7	400 aa		7.7	□□□□□ -1.18
SS18-223	ENST00000583595	PARP3	Q9Y6F1	533 aa		7.7	□□□□□ -1.18
SS18-223	ENST00000583595	SSFA2	P28290	1259 aa		7.69	□□□□□ -1.18
SS18-223	ENST00000583595	ARID4A	P29374	1257 aa	Predicted RBP	7.69	□□□□□ -1.18
SS18-223	ENST00000583595	MAP3K10	Q02779	954 aa		7.69	□□□□□ -1.18
SS18-223	ENST00000583595	NBPF1	Q3BBV0	1214 aa		7.69	□□□□□ -1.18
SS18-223	ENST00000583595	DNAJC14	Q6Y2X3	702 aa	Predicted RBP	7.69	□□□□□ -1.18
SS18-223	ENST00000583595	MRRF	Q96E11	262 aa	Known RBP	7.69	□□□□□ -1.18
SS18-223	ENST00000583595	EPHA4	P54764	986 aa		7.68	□□□□□ -1.18
SS18-223	ENST00000583595	FOXK2	Q01167	660 aa		7.68	□□□□□ -1.18
SS18-223	ENST00000583595	ARSJ	Q5FYB0	599 aa	Predicted RBP	7.68	□□□□□ -1.18
SS18-223	ENST00000583595	LARGE2	Q8N3Y3	721 aa		7.68	□□□□□ -1.18
SS18-223	ENST00000583595	ACD	Q96AP0	544 aa		7.68	□□□□□ -1.18
SS18-223	ENST00000583595	ABHD17A	Q96GS6	310 aa		7.68	□□□□□ -1.18
SS18-223	ENST00000583595	BNIP3L	O60238	219 aa		7.67	□□□□□ -1.18
SS18-223	ENST00000583595	TAT	P17735	454 aa	Predicted RBP	7.67	□□□□□ -1.18
SS18-223	ENST00000583595	SCNN1A	P37088	669 aa		7.67	□□□□□ -1.18
SS18-223	ENST00000583595	CRTC2	Q53ET0	693 aa	Predicted RBP	7.67	□□□□□ -1.18
SS18-223	ENST00000583595	TBCEL	Q5QJ74	424 aa		7.67	□□□□□ -1.18
SS18-223	ENST00000583595	SLC9A9	Q8IVB4	645 aa		7.67	□□□□□ -1.18
SS18-223	ENST00000583595	ZNF594	Q96JF6	807 aa	Predicted RBP	7.67	□□□□□ -1.18
SS18-223	ENST00000583595	ZCCHC2	Q9C0B9	1178 aa	Known RBP	7.67	□□□□□ -1.18
SS18-223	ENST00000583595	ZDHHC3	Q9NYG2	299 aa		7.67	□□□□□ -1.18

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