RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 ARID1BQ8NFD5 2236 aaPredicted RBP8.72□□□□□ -1.01
SMCHD1-209ENST00000583441 C9orf172C9J069 976 aa8.72□□□□□ -1.01
SMCHD1-209ENST00000583441 MAPTP10636 758 aaKnown RBP8.72□□□□□ -1.01
SMCHD1-209ENST00000583441 NLRP8Q86W28 1048 aa8.72□□□□□ -1.01
SMCHD1-209ENST00000583441 ELOA3CA0A087WX78 387 aaPredicted RBP8.71□□□□□ -1.02
SMCHD1-209ENST00000583441 DCDC2BA2VCK2 349 aa8.71□□□□□ -1.02
SMCHD1-209ENST00000583441 ELOA3DA6NLF2 546 aaPredicted RBP8.71□□□□□ -1.02
SMCHD1-209ENST00000583441 ELOA3BQ3SY89 546 aa8.71□□□□□ -1.02
SMCHD1-209ENST00000583441 ZNF468Q5VIY5 522 aaPredicted RBP8.71□□□□□ -1.02
SMCHD1-209ENST00000583441 ELOA3Q8NG57 546 aa8.71□□□□□ -1.02
SMCHD1-209ENST00000583441 ZC3H15Q8WU90 426 aaKnown RBP8.71□□□□□ -1.02
SMCHD1-209ENST00000583441 XAGE2Q96GT9 111 aa8.71□□□□□ -1.02
SMCHD1-209ENST00000583441 AK7Q96M32 723 aa8.71□□□□□ -1.02
SMCHD1-209ENST00000583441 FHDC1Q9C0D6 1143 aaPredicted RBP8.71□□□□□ -1.02
SMCHD1-209ENST00000583441 DNAAF2Q9NVR5 837 aaKnown RBP8.71□□□□□ -1.02
SMCHD1-209ENST00000583441 KHNYNO15037 678 aaKnown RBP8.7□□□□□ -1.02
SMCHD1-209ENST00000583441 TNP2Q05952 138 aa8.7□□□□□ -1.02
SMCHD1-209ENST00000583441 TBC1D9Q6ZT07 1266 aa8.7□□□□□ -1.02
SMCHD1-209ENST00000583441 RHBDD1Q8TEB9 315 aa8.7□□□□□ -1.02
SMCHD1-209ENST00000583441 TP53INP1Q96A56 240 aa8.7□□□□□ -1.02
SMCHD1-209ENST00000583441 ATP1B4Q9UN42 357 aaPredicted RBP8.7□□□□□ -1.02
SMCHD1-209ENST00000583441 HRH3Q9Y5N1 445 aa8.7□□□□□ -1.02
SMCHD1-209ENST00000583441 HMX1Q9NP08 348 aaPredicted RBP8.69□□□□□ -1.02
SMCHD1-209ENST00000583441 ZBBXA8MT70 800 aa8.68□□□□□ -1.02
SMCHD1-209ENST00000583441 ADGRE1Q14246 886 aa8.68□□□□□ -1.02
SMCHD1-209ENST00000583441 RNF112Q9ULX5 631 aa8.68□□□□□ -1.02
SMCHD1-209ENST00000583441 M0R082 166 aa8.67□□□□□ -1.02
SMCHD1-209ENST00000583441 TXNRD3Q86VQ6 643 aa8.67□□□□□ -1.02
SMCHD1-209ENST00000583441 ZNF417Q8TAU3 575 aa8.67□□□□□ -1.02
SMCHD1-209ENST00000583441 ZNF587Q96SQ5 575 aaPredicted RBP8.67□□□□□ -1.02
SMCHD1-209ENST00000583441 IRAK1P51617 712 aa8.66□□□□□ -1.02
SMCHD1-209ENST00000583441 MBTPS1Q14703 1052 aa8.66□□□□□ -1.02
SMCHD1-209ENST00000583441 ESCO1Q5FWF5 840 aa8.66□□□□□ -1.02
SMCHD1-209ENST00000583441 PCMTD2Q9NV79 361 aa8.66□□□□□ -1.02
SMCHD1-209ENST00000583441 PLA2G4AP47712 749 aa8.65□□□□□ -1.02
SMCHD1-209ENST00000583441 PDE4DQ08499 809 aa8.65□□□□□ -1.02
SMCHD1-209ENST00000583441 FBXO31Q5XUX0 539 aaPredicted RBP8.65□□□□□ -1.02
SMCHD1-209ENST00000583441 PPARGC1BQ86YN6 1023 aaKnown RBP8.65□□□□□ -1.02
SMCHD1-209ENST00000583441 C1orf216Q8TAB5 229 aa8.65□□□□□ -1.02
SMCHD1-209ENST00000583441 BCANQ96GW7 911 aa8.65□□□□□ -1.02
SMCHD1-209ENST00000583441 HCN2Q9UL51 889 aa8.65□□□□□ -1.02
SMCHD1-209ENST00000583441 MYCP01106 439 aaPredicted RBP8.64□□□□□ -1.03
SMCHD1-209ENST00000583441 USP17L8P0C7I0 530 aa8.64□□□□□ -1.03
SMCHD1-209ENST00000583441 MCCD1P59942 119 aaPredicted RBP8.64□□□□□ -1.03
SMCHD1-209ENST00000583441 NRG1Q02297 640 aaPredicted RBP8.63□□□□□ -1.03
SMCHD1-209ENST00000583441 COL9A3Q14050 684 aaPredicted RBP8.63□□□□□ -1.03
SMCHD1-209ENST00000583441 ARSJQ5FYB0 599 aaPredicted RBP8.63□□□□□ -1.03
SMCHD1-209ENST00000583441 TRAPPC3LQ5T215 181 aa8.63□□□□□ -1.03
SMCHD1-209ENST00000583441 AIDAQ96BJ3 306 aa8.63□□□□□ -1.03
SMCHD1-209ENST00000583441 KRTAP4-2Q9BYR5 136 aa8.63□□□□□ -1.03
SMCHD1-209ENST00000583441 PRDM6Q9NQX0 595 aa8.63□□□□□ -1.03
SMCHD1-209ENST00000583441 RNF114Q9Y508 228 aa8.63□□□□□ -1.03
SMCHD1-209ENST00000583441 MARK1Q9P0L2 795 aa8.62□□□□□ -1.03
SMCHD1-209ENST00000583441 A0A1W2PNR3 127 aa8.61□□□□□ -1.03
SMCHD1-209ENST00000583441 FBXO45P0C2W1 286 aa8.61□□□□□ -1.03
SMCHD1-209ENST00000583441 SELPP16109 830 aa8.61□□□□□ -1.03
SMCHD1-209ENST00000583441 ATP4AP20648 1035 aa8.61□□□□□ -1.03
SMCHD1-209ENST00000583441 TLR1Q15399 786 aa8.61□□□□□ -1.03
SMCHD1-209ENST00000583441 SKIV2LQ15477 1246 aaKnown RBP8.61□□□□□ -1.03
SMCHD1-209ENST00000583441 SYT9Q86SS6 491 aa8.61□□□□□ -1.03
SMCHD1-209ENST00000583441 ZNF592Q92610 1267 aa8.61□□□□□ -1.03
SMCHD1-209ENST00000583441 GJA3Q9Y6H8 435 aa8.61□□□□□ -1.03
SMCHD1-209ENST00000583441 C8orf86Q6ZUL3 223 aa8.6□□□□□ -1.03
SMCHD1-209ENST00000583441 MICALL1Q8N3F8 863 aa8.6□□□□□ -1.03
SMCHD1-209ENST00000583441 PROCA1Q8NCQ7 364 aaPredicted RBP8.6□□□□□ -1.03
SMCHD1-209ENST00000583441 FAM157BP0CG42 384 aa8.59□□□□□ -1.03
SMCHD1-209ENST00000583441 TAL1P17542 331 aaPredicted RBP8.59□□□□□ -1.03
SMCHD1-209ENST00000583441 LENG1Q96BZ8 264 aaPredicted RBP8.59□□□□□ -1.03
SMCHD1-209ENST00000583441 ADARB2-AS1A8MUL3 147 aa8.58□□□□□ -1.04
SMCHD1-209ENST00000583441 ALBP02768 609 aa8.58□□□□□ -1.04
SMCHD1-209ENST00000583441 NID1P14543 1247 aa8.58□□□□□ -1.04
SMCHD1-209ENST00000583441 MDFIQ99750 246 aa8.58□□□□□ -1.04
SMCHD1-209ENST00000583441 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.58□□□□□ -1.04
SMCHD1-209ENST00000583441 LAMC2Q13753 1193 aa8.57□□□□□ -1.04
SMCHD1-209ENST00000583441 STARD13Q9Y3M8 1113 aa8.57□□□□□ -1.04
SMCHD1-209ENST00000583441 SIN3BO75182 1162 aa8.56□□□□□ -1.04
SMCHD1-209ENST00000583441 NIFKQ9BYG3 293 aaKnown RBP8.56□□□□□ -1.04
SMCHD1-209ENST00000583441 STRN4Q9NRL3 753 aa8.56□□□□□ -1.04
SMCHD1-209ENST00000583441 USP21Q9UK80 565 aa8.56□□□□□ -1.04
SMCHD1-209ENST00000583441 TRIM34Q9BYJ4 488 aa8.55□□□□□ -1.04
SMCHD1-209ENST00000583441 ZNF330Q9Y3S2 320 aaPredicted RBP8.55□□□□□ -1.04
SMCHD1-209ENST00000583441 A0A0A0MRY4 1105 aa8.54□□□□□ -1.04
SMCHD1-209ENST00000583441 TATP17735 454 aaPredicted RBP8.54□□□□□ -1.04
SMCHD1-209ENST00000583441 SSTR4P31391 388 aa8.54□□□□□ -1.04
SMCHD1-209ENST00000583441 RAC1P63000 192 aa8.54□□□□□ -1.04
SMCHD1-209ENST00000583441 NBPF1Q3BBV0 1214 aa8.54□□□□□ -1.04
SMCHD1-209ENST00000583441 SHISA2Q6UWI4 295 aa8.54□□□□□ -1.04
SMCHD1-209ENST00000583441 SSBP4Q9BWG4 385 aaPredicted RBP8.54□□□□□ -1.04
SMCHD1-209ENST00000583441 CDCA7Q9BWT1 371 aaPredicted RBP8.53□□□□□ -1.04
SMCHD1-209ENST00000583441 ETNK1Q9HBU6 452 aa8.53□□□□□ -1.04
SMCHD1-209ENST00000583441 ZIC5Q96T25 663 aa8.52□□□□□ -1.05
SMCHD1-209ENST00000583441 EFSO43281 561 aa8.51□□□□□ -1.05
SMCHD1-209ENST00000583441 SH3D19Q5HYK7 790 aa8.51□□□□□ -1.05
SMCHD1-209ENST00000583441 SAMD5Q5TGI4 173 aa8.51□□□□□ -1.05
SMCHD1-209ENST00000583441 TNFRSF25Q93038 417 aa8.51□□□□□ -1.05
SMCHD1-209ENST00000583441 LILRB5O75023 590 aa8.5□□□□□ -1.05
SMCHD1-209ENST00000583441 NR1H3Q13133 447 aa8.5□□□□□ -1.05
SMCHD1-209ENST00000583441 STAU1O95793 577 aaKnown RBP8.49□□□□□ -1.05
SMCHD1-209ENST00000583441 ADH7P40394 386 aa8.49□□□□□ -1.05
SMCHD1-209ENST00000583441 C20orf204Q6ZNR8 217 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms