RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 PARP4Q9UKK3 1724 aaKnown RBP16.02■□□□□ 0.15
CDK5RAP3-217ENST00000580287 PRIM1P49642 420 aaKnown RBP16.01■□□□□ 0.15
CDK5RAP3-217ENST00000580287 API5Q9BZZ5 524 aaKnown RBP16.01■□□□□ 0.15
CDK5RAP3-217ENST00000580287 TMOD3Q9NYL9 352 aa16.01■□□□□ 0.15
CDK5RAP3-217ENST00000580287 AFF2P51816 1311 aa16.01■□□□□ 0.15
CDK5RAP3-217ENST00000580287 HEG1Q9ULI3 1381 aa16.01■□□□□ 0.15
CDK5RAP3-217ENST00000580287 RGS12O14924 1447 aa16.01■□□□□ 0.15
CDK5RAP3-217ENST00000580287 VPS72Q15906 364 aa16■□□□□ 0.15
CDK5RAP3-217ENST00000580287 THRAP3Q9Y2W1 955 aaKnown RBP16■□□□□ 0.15
CDK5RAP3-217ENST00000580287 ABCC4O15439 1325 aa16■□□□□ 0.15
CDK5RAP3-217ENST00000580287 ADAMTS7Q9UKP4 1686 aa16■□□□□ 0.15
CDK5RAP3-217ENST00000580287 SCN11AQ9UI33 1791 aa16■□□□□ 0.15
CDK5RAP3-217ENST00000580287 KAT6BQ8WYB5 2073 aa16■□□□□ 0.15
CDK5RAP3-217ENST00000580287 MYL6BP14649 208 aa16■□□□□ 0.15
CDK5RAP3-217ENST00000580287 EP400Q96L91 3159 aa16■□□□□ 0.15
CDK5RAP3-217ENST00000580287 VIRMAQ69YN4 1812 aaKnown RBP16■□□□□ 0.15
CDK5RAP3-217ENST00000580287 DDX19BQ9UMR2 479 aa15.99■□□□□ 0.15
CDK5RAP3-217ENST00000580287 NRAPQ86VF7 1730 aa15.99■□□□□ 0.15
CDK5RAP3-217ENST00000580287 SHANK3Q9BYB0 1731 aa15.99■□□□□ 0.15
CDK5RAP3-217ENST00000580287 KDM3BQ7LBC6 1761 aa15.99■□□□□ 0.15
CDK5RAP3-217ENST00000580287 ZBTB7BO15156 539 aaPredicted RBP15.99■□□□□ 0.15
CDK5RAP3-217ENST00000580287 AIMP1Q12904 312 aaKnown RBP15.99■□□□□ 0.15
CDK5RAP3-217ENST00000580287 FMNL2Q96PY5 1086 aa15.99■□□□□ 0.15
CDK5RAP3-217ENST00000580287 PLEKHG2Q9H7P9 1386 aa15.99■□□□□ 0.15
CDK5RAP3-217ENST00000580287 RTL5Q5HYW3 569 aaPredicted RBP15.98■□□□□ 0.15
CDK5RAP3-217ENST00000580287 ZBTB40Q9NUA8 1239 aa15.98■□□□□ 0.15
CDK5RAP3-217ENST00000580287 BARGINQ6ZT62 677 aa15.98■□□□□ 0.15
CDK5RAP3-217ENST00000580287 PTPRCP08575 1304 aa15.98■□□□□ 0.15
CDK5RAP3-217ENST00000580287 SNRPA1P09661 255 aaKnown RBP15.98■□□□□ 0.15
CDK5RAP3-217ENST00000580287 PDIA6Q15084 440 aa15.98■□□□□ 0.15
CDK5RAP3-217ENST00000580287 KCNQ2O43526 872 aa15.97■□□□□ 0.15
CDK5RAP3-217ENST00000580287 HOXB7P09629 217 aa15.97■□□□□ 0.15
CDK5RAP3-217ENST00000580287 SIPA1L3O60292 1781 aaPredicted RBP15.97■□□□□ 0.15
CDK5RAP3-217ENST00000580287 ATG3Q9NT62 314 aa15.97■□□□□ 0.15
CDK5RAP3-217ENST00000580287 DBF4Q9UBU7 674 aaPredicted RBP15.97■□□□□ 0.15
CDK5RAP3-217ENST00000580287 MRC1P22897 1456 aa15.96■□□□□ 0.15
CDK5RAP3-217ENST00000580287 PI4KAP2A4QPH2 592 aa15.96■□□□□ 0.15
CDK5RAP3-217ENST00000580287 PTF1AQ7RTS3 328 aa15.96■□□□□ 0.15
CDK5RAP3-217ENST00000580287 PI4KAP1Q8N8J0 262 aa15.96■□□□□ 0.15
CDK5RAP3-217ENST00000580287 RBM42Q9BTD8 480 aaKnown RBP15.96■□□□□ 0.15
CDK5RAP3-217ENST00000580287 C8orf34Q49A92 452 aa15.96■□□□□ 0.14
CDK5RAP3-217ENST00000580287 CDCA7Q9BWT1 371 aaPredicted RBP15.96■□□□□ 0.14
CDK5RAP3-217ENST00000580287 TNS2Q63HR2 1409 aa15.95■□□□□ 0.14
CDK5RAP3-217ENST00000580287 INTS3Q68E01 1043 aaKnown RBP15.95■□□□□ 0.14
CDK5RAP3-217ENST00000580287 MEIS3Q99687 375 aa15.95■□□□□ 0.14
CDK5RAP3-217ENST00000580287 SOS1Q07889 1333 aaPredicted RBP15.95■□□□□ 0.14
CDK5RAP3-217ENST00000580287 A1BGP04217 495 aa15.95■□□□□ 0.14
CDK5RAP3-217ENST00000580287 GJD4Q96KN9 370 aaPredicted RBP15.95■□□□□ 0.14
CDK5RAP3-217ENST00000580287 TOGARAM1Q9Y4F4 1720 aa15.94■□□□□ 0.14
CDK5RAP3-217ENST00000580287 FAM161AQ3B820 660 aa15.93■□□□□ 0.14
CDK5RAP3-217ENST00000580287 SLC4A9Q96Q91 983 aa15.93■□□□□ 0.14
CDK5RAP3-217ENST00000580287 QTRT2Q9H974 415 aaKnown RBP15.93■□□□□ 0.14
CDK5RAP3-217ENST00000580287 DDX21Q9NR30 783 aaKnown RBP eCLIP15.93■□□□□ 0.14
CDK5RAP3-217ENST00000580287 NWD2Q9ULI1 1742 aa15.93■□□□□ 0.14
CDK5RAP3-217ENST00000580287 COPS6Q7L5N1 327 aa15.92■□□□□ 0.14
CDK5RAP3-217ENST00000580287 NBPF26B4DH59 902 aa15.92■□□□□ 0.14
CDK5RAP3-217ENST00000580287 TMEM132AQ24JP5 1023 aa15.92■□□□□ 0.14
CDK5RAP3-217ENST00000580287 NBPF14Q5TI25 921 aa15.92■□□□□ 0.14
CDK5RAP3-217ENST00000580287 NBPF10Q6P3W6 841 aaKnown RBP15.92■□□□□ 0.14
CDK5RAP3-217ENST00000580287 DNAJC10Q8IXB1 793 aa15.92■□□□□ 0.14
CDK5RAP3-217ENST00000580287 NBPF15Q8N660 670 aa15.92■□□□□ 0.14
CDK5RAP3-217ENST00000580287 XAGE3Q8WTP9 111 aa15.92■□□□□ 0.14
CDK5RAP3-217ENST00000580287 MAP3K2Q9Y2U5 619 aa15.91■□□□□ 0.14
CDK5RAP3-217ENST00000580287 ZNF330Q9Y3S2 320 aaPredicted RBP15.91■□□□□ 0.14
CDK5RAP3-217ENST00000580287 BCL9O00512 1426 aa15.91■□□□□ 0.14
CDK5RAP3-217ENST00000580287 AAMPQ13685 434 aa15.91■□□□□ 0.14
CDK5RAP3-217ENST00000580287 SIRT2Q8IXJ6 389 aa15.91■□□□□ 0.14
CDK5RAP3-217ENST00000580287 RWDD1Q9H446 243 aaPredicted RBP15.91■□□□□ 0.14
CDK5RAP3-217ENST00000580287 ADCY9O60503 1353 aa15.9■□□□□ 0.14
CDK5RAP3-217ENST00000580287 LRP10Q7Z4F1 713 aa15.9■□□□□ 0.14
CDK5RAP3-217ENST00000580287 KCNQ4P56696 695 aa15.9■□□□□ 0.14
CDK5RAP3-217ENST00000580287 HYPKQ9NX55 129 aa15.9■□□□□ 0.14
CDK5RAP3-217ENST00000580287 DNAAF4Q8WXU2 420 aa15.89■□□□□ 0.13
CDK5RAP3-217ENST00000580287 TRPC5Q9UL62 973 aaPredicted RBP15.89■□□□□ 0.13
CDK5RAP3-217ENST00000580287 C5P01031 1676 aa15.89■□□□□ 0.13
CDK5RAP3-217ENST00000580287 KCPQ6ZWJ8 1503 aa15.89■□□□□ 0.13
CDK5RAP3-217ENST00000580287 CWF19L2Q2TBE0 894 aaKnown RBP15.89■□□□□ 0.13
CDK5RAP3-217ENST00000580287 SEC24BO95487 1268 aa15.88■□□□□ 0.13
CDK5RAP3-217ENST00000580287 CCT4P50991 539 aaKnown RBP15.88■□□□□ 0.13
CDK5RAP3-217ENST00000580287 SEPT12Q8IYM1 358 aa15.88■□□□□ 0.13
CDK5RAP3-217ENST00000580287 BEND3Q5T5X7 828 aa15.87■□□□□ 0.13
CDK5RAP3-217ENST00000580287 TTLL7Q6ZT98 887 aa15.87■□□□□ 0.13
CDK5RAP3-217ENST00000580287 USP44Q9H0E7 712 aa15.87■□□□□ 0.13
CDK5RAP3-217ENST00000580287 KSR2Q6VAB6 950 aa15.87■□□□□ 0.13
CDK5RAP3-217ENST00000580287 RIC3Q7Z5B4 369 aa15.87■□□□□ 0.13
CDK5RAP3-217ENST00000580287 CHMP4AQ9BY43 222 aa15.86■□□□□ 0.13
CDK5RAP3-217ENST00000580287 SRCIN1Q9C0H9 1055 aa15.86■□□□□ 0.13
CDK5RAP3-217ENST00000580287 PDZRN3Q9UPQ7 1066 aa15.86■□□□□ 0.13
CDK5RAP3-217ENST00000580287 GLI3P10071 1580 aa15.86■□□□□ 0.13
CDK5RAP3-217ENST00000580287 NBPF7P0C2Y1 421 aaPredicted RBP15.86■□□□□ 0.13
CDK5RAP3-217ENST00000580287 JARID2Q92833 1246 aaPredicted RBP15.86■□□□□ 0.13
CDK5RAP3-217ENST00000580287 ANKRD13DQ6ZTN6 518 aa15.85■□□□□ 0.13
CDK5RAP3-217ENST00000580287 ANO8Q9HCE9 1232 aaPredicted RBP15.85■□□□□ 0.13
CDK5RAP3-217ENST00000580287 WNK3Q9BYP7 1800 aa15.85■□□□□ 0.13
CDK5RAP3-217ENST00000580287 IL27Q8NEV9 243 aa15.84■□□□□ 0.13
CDK5RAP3-217ENST00000580287 ATRNO75882 1429 aa15.84■□□□□ 0.13
CDK5RAP3-217ENST00000580287 ATP5J2-PTCD1G3V325 749 aa15.84■□□□□ 0.13
CDK5RAP3-217ENST00000580287 ZBTB3Q9H5J0 574 aa15.84■□□□□ 0.13
CDK5RAP3-217ENST00000580287 IGKV5-2P06315 115 aa15.83■□□□□ 0.13
CDK5RAP3-217ENST00000580287 HDAC1Q13547 482 aaPredicted RBP15.83■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms