RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 COL15A1P39059 1388 aa20.55■□□□□ 0.88
SF3B3-215ENST00000577085 GOLGB1Q14789 3259 aaKnown RBP20.54■□□□□ 0.88
SF3B3-215ENST00000577085 UBR2Q8IWV8 1755 aa20.54■□□□□ 0.88
SF3B3-215ENST00000577085 ZEB1P37275 1124 aaPredicted RBP20.54■□□□□ 0.88
SF3B3-215ENST00000577085 FKBP8Q14318 412 aa20.54■□□□□ 0.88
SF3B3-215ENST00000577085 USPL1Q5W0Q7 1092 aa20.54■□□□□ 0.88
SF3B3-215ENST00000577085 WWC3Q9ULE0 1092 aa20.54■□□□□ 0.88
SF3B3-215ENST00000577085 ZNF330Q9Y3S2 320 aaPredicted RBP20.54■□□□□ 0.88
SF3B3-215ENST00000577085 DCTN1Q14203 1278 aa20.53■□□□□ 0.88
SF3B3-215ENST00000577085 SIPA1L3O60292 1781 aaPredicted RBP20.52■□□□□ 0.88
SF3B3-215ENST00000577085 A0A087WZG4 1122 aa20.52■□□□□ 0.88
SF3B3-215ENST00000577085 TGFB2P61812 414 aa20.52■□□□□ 0.88
SF3B3-215ENST00000577085 NARFQ9UHQ1 456 aa20.52■□□□□ 0.88
SF3B3-215ENST00000577085 CHD4Q14839 1912 aa20.52■□□□□ 0.88
SF3B3-215ENST00000577085 MYBBP1AQ9BQG0 1328 aaKnown RBP20.52■□□□□ 0.87
SF3B3-215ENST00000577085 KCNQ3O43525 872 aa20.5■□□□□ 0.87
SF3B3-215ENST00000577085 TAF7Q15545 349 aaPredicted RBP20.49■□□□□ 0.87
SF3B3-215ENST00000577085 NFE2L2Q16236 605 aa20.49■□□□□ 0.87
SF3B3-215ENST00000577085 ZNF784Q8NCA9 323 aaPredicted RBP20.49■□□□□ 0.87
SF3B3-215ENST00000577085 PLEKHF1Q96S99 279 aa20.49■□□□□ 0.87
SF3B3-215ENST00000577085 C10orf71Q711Q0 1435 aa20.49■□□□□ 0.87
SF3B3-215ENST00000577085 A0A0G2JLW4 131 aa20.48■□□□□ 0.87
SF3B3-215ENST00000577085 SNRPA1P09661 255 aaKnown RBP20.48■□□□□ 0.87
SF3B3-215ENST00000577085 IL6STP40189 918 aaPredicted RBP20.47■□□□□ 0.87
SF3B3-215ENST00000577085 EIF5P55010 431 aaKnown RBP20.47■□□□□ 0.87
SF3B3-215ENST00000577085 DDR1Q08345 913 aa20.47■□□□□ 0.87
SF3B3-215ENST00000577085 WDR43Q15061 677 aaKnown RBP eCLIP20.47■□□□□ 0.87
SF3B3-215ENST00000577085 PNISRQ8TF01 805 aaKnown RBP20.47■□□□□ 0.87
SF3B3-215ENST00000577085 PXDNLA1KZ92 1463 aa20.47■□□□□ 0.87
SF3B3-215ENST00000577085 BCS1LQ9Y276 419 aa20.46■□□□□ 0.87
SF3B3-215ENST00000577085 POLRMTO00411 1230 aaKnown RBP20.45■□□□□ 0.86
SF3B3-215ENST00000577085 A1BGP04217 495 aa20.45■□□□□ 0.86
SF3B3-215ENST00000577085 DPEP1P16444 411 aa20.45■□□□□ 0.86
SF3B3-215ENST00000577085 TM4SF1P30408 202 aa20.45■□□□□ 0.86
SF3B3-215ENST00000577085 NFIXQ14938 502 aa20.45■□□□□ 0.86
SF3B3-215ENST00000577085 KIF13BQ9NQT8 1826 aa20.44■□□□□ 0.86
SF3B3-215ENST00000577085 BICDL1Q6ZP65 573 aa20.44■□□□□ 0.86
SF3B3-215ENST00000577085 MIS18AQ9NYP9 233 aa20.44■□□□□ 0.86
SF3B3-215ENST00000577085 TBC1D2BQ9UPU7 963 aa20.44■□□□□ 0.86
SF3B3-215ENST00000577085 USP16Q9Y5T5 823 aa20.43■□□□□ 0.86
SF3B3-215ENST00000577085 NPHP1O15259 732 aa20.42■□□□□ 0.86
SF3B3-215ENST00000577085 RIPK4P57078 832 aa20.42■□□□□ 0.86
SF3B3-215ENST00000577085 LMOD3Q0VAK6 560 aa20.42■□□□□ 0.86
SF3B3-215ENST00000577085 PIM2Q9P1W9 311 aa20.42■□□□□ 0.86
SF3B3-215ENST00000577085 N4BP2Q86UW6 1770 aaPredicted RBP20.41■□□□□ 0.86
SF3B3-215ENST00000577085 PRAMEF22A3QJZ6 481 aa20.41■□□□□ 0.86
SF3B3-215ENST00000577085 SERPINB2P05120 415 aa20.41■□□□□ 0.86
SF3B3-215ENST00000577085 THUMPD2Q9BTF0 503 aaKnown RBP20.41■□□□□ 0.86
SF3B3-215ENST00000577085 BCL2L12Q9HB09 334 aa20.41■□□□□ 0.86
SF3B3-215ENST00000577085 DZIP3Q86Y13 1208 aaKnown RBP20.4■□□□□ 0.86
SF3B3-215ENST00000577085 DLG5Q8TDM6 1919 aa20.4■□□□□ 0.86
SF3B3-215ENST00000577085 PRKRIP1Q9H875 184 aaPredicted RBP20.4■□□□□ 0.86
SF3B3-215ENST00000577085 PIP4K2AP48426 406 aaPredicted RBP20.39■□□□□ 0.85
SF3B3-215ENST00000577085 DALRD3Q5D0E6 543 aaKnown RBP20.39■□□□□ 0.85
SF3B3-215ENST00000577085 ARHGAP27Q6ZUM4 889 aa20.39■□□□□ 0.85
SF3B3-215ENST00000577085 CCDC146Q8IYE0 955 aa20.39■□□□□ 0.85
SF3B3-215ENST00000577085 NEUROD2Q15784 382 aa20.38■□□□□ 0.85
SF3B3-215ENST00000577085 TBC1D9BQ66K14 1250 aa20.38■□□□□ 0.85
SF3B3-215ENST00000577085 SETDB2Q96T68 719 aa20.38■□□□□ 0.85
SF3B3-215ENST00000577085 ZNF652Q9Y2D9 606 aa20.38■□□□□ 0.85
SF3B3-215ENST00000577085 CHRNA5P30532 468 aa20.37■□□□□ 0.85
SF3B3-215ENST00000577085 TMPOP42166 694 aaKnown RBP20.37■□□□□ 0.85
SF3B3-215ENST00000577085 TSPYL4Q9UJ04 414 aa20.37■□□□□ 0.85
SF3B3-215ENST00000577085 KIAA1551Q9HCM1 1747 aa20.36■□□□□ 0.85
SF3B3-215ENST00000577085 CARMIL3Q8ND23 1372 aa20.36■□□□□ 0.85
SF3B3-215ENST00000577085 RUNDC1Q96C34 613 aa20.36■□□□□ 0.85
SF3B3-215ENST00000577085 RRP7AQ9Y3A4 280 aaKnown RBP20.36■□□□□ 0.85
SF3B3-215ENST00000577085 SCN7AQ01118 1682 aa20.35■□□□□ 0.85
SF3B3-215ENST00000577085 CAMTA2O94983 1202 aa20.35■□□□□ 0.85
SF3B3-215ENST00000577085 KCNA3P22001 575 aa20.35■□□□□ 0.85
SF3B3-215ENST00000577085 H0YIN7 160 aa20.34■□□□□ 0.85
SF3B3-215ENST00000577085 GIGYF1O75420 1035 aaPredicted RBP20.34■□□□□ 0.85
SF3B3-215ENST00000577085 EIF4A1P60842 406 aaKnown RBP20.34■□□□□ 0.85
SF3B3-215ENST00000577085 ADAMTS8Q9UP79 889 aa20.34■□□□□ 0.85
SF3B3-215ENST00000577085 C2CD5Q86YS7 1000 aa20.33■□□□□ 0.85
SF3B3-215ENST00000577085 CNBD1Q8NA66 436 aa20.33■□□□□ 0.85
SF3B3-215ENST00000577085 ATP10DQ9P241 1426 aa20.33■□□□□ 0.84
SF3B3-215ENST00000577085 AFDNP55196 1824 aaKnown RBP20.32■□□□□ 0.84
SF3B3-215ENST00000577085 KDM3BQ7LBC6 1761 aa20.32■□□□□ 0.84
SF3B3-215ENST00000577085 NBPF26B4DH59 902 aa20.32■□□□□ 0.84
SF3B3-215ENST00000577085 PDE6BP35913 854 aa20.32■□□□□ 0.84
SF3B3-215ENST00000577085 ST5P78524 1137 aa20.32■□□□□ 0.84
SF3B3-215ENST00000577085 NBPF10Q6P3W6 841 aaKnown RBP20.32■□□□□ 0.84
SF3B3-215ENST00000577085 CLEC4GQ6UXB4 293 aa20.32■□□□□ 0.84
SF3B3-215ENST00000577085 NGEFQ8N5V2 710 aa20.32■□□□□ 0.84
SF3B3-215ENST00000577085 NBPF15Q8N660 670 aa20.32■□□□□ 0.84
SF3B3-215ENST00000577085 ZNF526Q8TF50 670 aaPredicted RBP20.32■□□□□ 0.84
SF3B3-215ENST00000577085 GPBP1L1Q9HC44 474 aaPredicted RBP20.32■□□□□ 0.84
SF3B3-215ENST00000577085 BABAM1Q9NWV8 329 aa20.31■□□□□ 0.84
SF3B3-215ENST00000577085 PDZRN3Q9UPQ7 1066 aa20.31■□□□□ 0.84
SF3B3-215ENST00000577085 LAMB4A4D0S4 1761 aa20.31■□□□□ 0.84
SF3B3-215ENST00000577085 NRXN2Q9P2S2 1712 aa20.3■□□□□ 0.84
SF3B3-215ENST00000577085 MYL6BP14649 208 aa20.3■□□□□ 0.84
SF3B3-215ENST00000577085 KIF6Q6ZMV9 814 aa20.3■□□□□ 0.84
SF3B3-215ENST00000577085 NBPF5PQ86XG9 351 aaPredicted RBP20.3■□□□□ 0.84
SF3B3-215ENST00000577085 BRIP1Q9BX63 1249 aa20.3■□□□□ 0.84
SF3B3-215ENST00000577085 LAS1LQ9Y4W2 734 aaKnown RBP20.3■□□□□ 0.84
SF3B3-215ENST00000577085 BRCA1P38398 1863 aaKnown RBP20.29■□□□□ 0.84
SF3B3-215ENST00000577085 PRR5LQ6MZQ0 368 aa20.29■□□□□ 0.84
SF3B3-215ENST00000577085 TTLL6Q8N841 843 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms