RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 ARFGEF1Q9Y6D6 1849 aa18.42■□□□□ 0.54
CCDC40-216ENST00000576241 MRC1P22897 1456 aa18.42■□□□□ 0.54
CCDC40-216ENST00000576241 GYS1P13807 737 aa18.42■□□□□ 0.54
CCDC40-216ENST00000576241 RNF181Q9P0P0 153 aa18.42■□□□□ 0.54
CCDC40-216ENST00000576241 COL3A1P02461 1466 aaPredicted RBP18.41■□□□□ 0.54
CCDC40-216ENST00000576241 CFAP53Q96M91 514 aa18.41■□□□□ 0.54
CCDC40-216ENST00000576241 PARP3Q9Y6F1 533 aa18.41■□□□□ 0.54
CCDC40-216ENST00000576241 CCDC87Q9NVE4 849 aa18.4■□□□□ 0.54
CCDC40-216ENST00000576241 KCNA3P22001 575 aa18.39■□□□□ 0.53
CCDC40-216ENST00000576241 SLC39A6Q13433 755 aa18.39■□□□□ 0.53
CCDC40-216ENST00000576241 GAS2L2Q8NHY3 880 aa18.39■□□□□ 0.53
CCDC40-216ENST00000576241 TJP1Q07157 1748 aa18.38■□□□□ 0.53
CCDC40-216ENST00000576241 SBF1O95248 1867 aa18.38■□□□□ 0.53
CCDC40-216ENST00000576241 INTS5Q6P9B9 1019 aaKnown RBP18.38■□□□□ 0.53
CCDC40-216ENST00000576241 DNAJC10Q8IXB1 793 aa18.38■□□□□ 0.53
CCDC40-216ENST00000576241 USP42Q9H9J4 1324 aaKnown RBP18.38■□□□□ 0.53
CCDC40-216ENST00000576241 SRP68Q9UHB9 627 aaKnown RBP18.37■□□□□ 0.53
CCDC40-216ENST00000576241 GNAT3A8MTJ3 354 aa18.36■□□□□ 0.53
CCDC40-216ENST00000576241 C4AP0C0L4 1744 aa18.36■□□□□ 0.53
CCDC40-216ENST00000576241 CYP19A1P11511 503 aaPredicted RBP18.36■□□□□ 0.53
CCDC40-216ENST00000576241 TEFQ10587 303 aa18.36■□□□□ 0.53
CCDC40-216ENST00000576241 FAM161AQ3B820 660 aa18.36■□□□□ 0.53
CCDC40-216ENST00000576241 TTC5Q8N0Z6 440 aa18.36■□□□□ 0.53
CCDC40-216ENST00000576241 NUDCQ9Y266 331 aa18.36■□□□□ 0.53
CCDC40-216ENST00000576241 MYH14Q7Z406 1995 aaKnown RBP18.35■□□□□ 0.53
CCDC40-216ENST00000576241 ADAMTS7Q9UKP4 1686 aa18.35■□□□□ 0.53
CCDC40-216ENST00000576241 ZPR1O75312 459 aa18.35■□□□□ 0.53
CCDC40-216ENST00000576241 VSIG10Q8N0Z9 540 aa18.35■□□□□ 0.53
CCDC40-216ENST00000576241 PIM2Q9P1W9 311 aa18.35■□□□□ 0.53
CCDC40-216ENST00000576241 SOS1Q07889 1333 aaPredicted RBP18.34■□□□□ 0.53
CCDC40-216ENST00000576241 FOXN1O15353 648 aa18.34■□□□□ 0.53
CCDC40-216ENST00000576241 FKBP8Q14318 412 aa18.34■□□□□ 0.53
CCDC40-216ENST00000576241 VEGFAP15692 232 aaPredicted RBP18.33■□□□□ 0.52
CCDC40-216ENST00000576241 PRKAR2BP31323 418 aa18.33■□□□□ 0.52
CCDC40-216ENST00000576241 DALRD3Q5D0E6 543 aaKnown RBP18.33■□□□□ 0.52
CCDC40-216ENST00000576241 STARD3NLO95772 234 aa18.32■□□□□ 0.52
CCDC40-216ENST00000576241 PPP2R1AP30153 589 aa18.32■□□□□ 0.52
CCDC40-216ENST00000576241 USPL1Q5W0Q7 1092 aa18.32■□□□□ 0.52
CCDC40-216ENST00000576241 PRDM10Q9NQV6 1147 aa18.32■□□□□ 0.52
CCDC40-216ENST00000576241 COL15A1P39059 1388 aa18.31■□□□□ 0.52
CCDC40-216ENST00000576241 IL17REQ8NFR9 667 aa18.31■□□□□ 0.52
CCDC40-216ENST00000576241 RSPH6AQ9H0K4 717 aa18.31■□□□□ 0.52
CCDC40-216ENST00000576241 MKRN1Q9UHC7 482 aaKnown RBP18.31■□□□□ 0.52
CCDC40-216ENST00000576241 ZBTB1Q9Y2K1 713 aa18.31■□□□□ 0.52
CCDC40-216ENST00000576241 U2AF1L5P0DN76 240 aaPredicted RBP18.3■□□□□ 0.52
CCDC40-216ENST00000576241 U2AF1Q01081 240 aaKnown RBP eCLIP18.3■□□□□ 0.52
CCDC40-216ENST00000576241 DDR1Q08345 913 aa18.3■□□□□ 0.52
CCDC40-216ENST00000576241 ZNF790Q6PG37 636 aa18.29■□□□□ 0.52
CCDC40-216ENST00000576241 PHACTR3Q96KR7 559 aa18.29■□□□□ 0.52
CCDC40-216ENST00000576241 NARFQ9UHQ1 456 aa18.29■□□□□ 0.52
CCDC40-216ENST00000576241 VIRMAQ69YN4 1812 aaKnown RBP18.28■□□□□ 0.52
CCDC40-216ENST00000576241 GLTPD2A6NH11 291 aa18.28■□□□□ 0.52
CCDC40-216ENST00000576241 POLRMTO00411 1230 aaKnown RBP18.28■□□□□ 0.52
CCDC40-216ENST00000576241 CANXP27824 592 aaKnown RBP18.28■□□□□ 0.52
CCDC40-216ENST00000576241 TM4SF1P30408 202 aa18.28■□□□□ 0.52
CCDC40-216ENST00000576241 ZNF496Q96IT1 587 aaPredicted RBP18.28■□□□□ 0.52
CCDC40-216ENST00000576241 TEX13AQ9BXU3 409 aaPredicted RBP18.28■□□□□ 0.52
CCDC40-216ENST00000576241 CEMIPQ8WUJ3 1361 aa18.28■□□□□ 0.52
CCDC40-216ENST00000576241 UBR2Q8IWV8 1755 aa18.27■□□□□ 0.52
CCDC40-216ENST00000576241 ZC3H4Q9UPT8 1303 aaKnown RBP18.27■□□□□ 0.52
CCDC40-216ENST00000576241 RASSF7Q02833 373 aa18.27■□□□□ 0.52
CCDC40-216ENST00000576241 RTF1Q92541 710 aaKnown RBP18.27■□□□□ 0.52
CCDC40-216ENST00000576241 FMNL2Q96PY5 1086 aa18.27■□□□□ 0.52
CCDC40-216ENST00000576241 HEG1Q9ULI3 1381 aa18.27■□□□□ 0.51
CCDC40-216ENST00000576241 CHRNA5P30532 468 aa18.26■□□□□ 0.51
CCDC40-216ENST00000576241 CREBZFQ9NS37 354 aa18.26■□□□□ 0.51
CCDC40-216ENST00000576241 A0A087WZG4 1122 aa18.25■□□□□ 0.51
CCDC40-216ENST00000576241 BTBD11A6QL63 1104 aa18.25■□□□□ 0.51
CCDC40-216ENST00000576241 CTCFP49711 727 aaPredicted RBP18.25■□□□□ 0.51
CCDC40-216ENST00000576241 NFIXQ14938 502 aa18.25■□□□□ 0.51
CCDC40-216ENST00000576241 ABHD8Q96I13 439 aa18.25■□□□□ 0.51
CCDC40-216ENST00000576241 EIF5P55010 431 aaKnown RBP18.24■□□□□ 0.51
CCDC40-216ENST00000576241 NPM2Q86SE8 214 aaKnown RBP18.24■□□□□ 0.51
CCDC40-216ENST00000576241 ZNF330Q9Y3S2 320 aaPredicted RBP18.24■□□□□ 0.51
CCDC40-216ENST00000576241 POTECB2RU33 542 aa18.23■□□□□ 0.51
CCDC40-216ENST00000576241 AIDAQ96BJ3 306 aa18.23■□□□□ 0.51
CCDC40-216ENST00000576241 SERPINB2P05120 415 aa18.22■□□□□ 0.51
CCDC40-216ENST00000576241 NEFMP07197 916 aa18.22■□□□□ 0.51
CCDC40-216ENST00000576241 LMNB1P20700 586 aa18.22■□□□□ 0.51
CCDC40-216ENST00000576241 LBX1P52954 281 aa18.22■□□□□ 0.51
CCDC40-216ENST00000576241 BCL2L12Q9HB09 334 aa18.22■□□□□ 0.51
CCDC40-216ENST00000576241 CCDC88AQ3V6T2 1871 aa18.22■□□□□ 0.51
CCDC40-216ENST00000576241 TIAM2Q8IVF5 1701 aa18.21■□□□□ 0.51
CCDC40-216ENST00000576241 MLLT1Q03111 559 aaPredicted RBP18.21■□□□□ 0.51
CCDC40-216ENST00000576241 MCM10Q7L590 875 aa18.21■□□□□ 0.51
CCDC40-216ENST00000576241 SIPA1L3O60292 1781 aaPredicted RBP18.21■□□□□ 0.51
CCDC40-216ENST00000576241 CNTNAP1P78357 1384 aa18.2■□□□□ 0.5
CCDC40-216ENST00000576241 HTATSF1O43719 755 aaKnown RBP18.2■□□□□ 0.5
CCDC40-216ENST00000576241 IL6STP40189 918 aaPredicted RBP18.2■□□□□ 0.5
CCDC40-216ENST00000576241 BICDL1Q6ZP65 573 aa18.2■□□□□ 0.5
CCDC40-216ENST00000576241 KCNQ3O43525 872 aa18.19■□□□□ 0.5
CCDC40-216ENST00000576241 A1BGP04217 495 aa18.18■□□□□ 0.5
CCDC40-216ENST00000576241 CHADLQ6NUI6 762 aa18.18■□□□□ 0.5
CCDC40-216ENST00000576241 TBC1D2BQ9UPU7 963 aa18.18■□□□□ 0.5
CCDC40-216ENST00000576241 DCTN1Q14203 1278 aa18.17■□□□□ 0.5
CCDC40-216ENST00000576241 TBC1D9BQ66K14 1250 aa18.17■□□□□ 0.5
CCDC40-216ENST00000576241 SNRPA1P09661 255 aaKnown RBP18.16■□□□□ 0.5
CCDC40-216ENST00000576241 VEGFBP49765 207 aa18.16■□□□□ 0.5
CCDC40-216ENST00000576241 WBP1LQ9NX94 342 aa18.16■□□□□ 0.5
CCDC40-216ENST00000576241 CARMIL3Q8ND23 1372 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms