RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 DNAAF4Q8WXU2 420 aa12.37□□□□□ -0.43
VPS53-220ENST00000576149 GBP4Q96PP9 640 aa12.37□□□□□ -0.43
VPS53-220ENST00000576149 AXIN2Q9Y2T1 843 aa12.37□□□□□ -0.43
VPS53-220ENST00000576149 C1orf167Q5SNV9 1468 aa12.37□□□□□ -0.43
VPS53-220ENST00000576149 MST1RQ04912 1400 aa12.37□□□□□ -0.43
VPS53-220ENST00000576149 CAMTA1Q9Y6Y1 1673 aa12.37□□□□□ -0.43
VPS53-220ENST00000576149 PI4KAP2A4QPH2 592 aa12.37□□□□□ -0.43
VPS53-220ENST00000576149 PPP1R42Q7Z4L9 355 aa12.37□□□□□ -0.43
VPS53-220ENST00000576149 PI4KAP1Q8N8J0 262 aa12.37□□□□□ -0.43
VPS53-220ENST00000576149 RAB11FIP3O75154 756 aa12.36□□□□□ -0.43
VPS53-220ENST00000576149 L1TD1Q5T7N2 865 aaKnown RBP12.36□□□□□ -0.43
VPS53-220ENST00000576149 C19orf44Q9H6X5 657 aa12.36□□□□□ -0.43
VPS53-220ENST00000576149 TUBGCP6Q96RT7 1819 aa12.36□□□□□ -0.43
VPS53-220ENST00000576149 AOX1Q06278 1338 aa12.36□□□□□ -0.43
VPS53-220ENST00000576149 HEG1Q9ULI3 1381 aa12.36□□□□□ -0.43
VPS53-220ENST00000576149 DBF4Q9UBU7 674 aaPredicted RBP12.36□□□□□ -0.43
VPS53-220ENST00000576149 KIF1AQ12756 1690 aa12.35□□□□□ -0.43
VPS53-220ENST00000576149 ST18O60284 1047 aa12.35□□□□□ -0.43
VPS53-220ENST00000576149 NBPF7P0C2Y1 421 aaPredicted RBP12.35□□□□□ -0.43
VPS53-220ENST00000576149 ESYT1Q9BSJ8 1104 aa12.35□□□□□ -0.43
VPS53-220ENST00000576149 ADCY9O60503 1353 aa12.35□□□□□ -0.43
VPS53-220ENST00000576149 LMTK3Q96Q04 1460 aa12.35□□□□□ -0.43
VPS53-220ENST00000576149 FSD2A1L4K1 749 aa12.35□□□□□ -0.43
VPS53-220ENST00000576149 GIGYF1O75420 1035 aaPredicted RBP12.35□□□□□ -0.43
VPS53-220ENST00000576149 CLEC17AQ6ZS10 378 aa12.35□□□□□ -0.43
VPS53-220ENST00000576149 SURF6O75683 361 aaKnown RBP12.34□□□□□ -0.43
VPS53-220ENST00000576149 ANXA1P04083 346 aa12.34□□□□□ -0.43
VPS53-220ENST00000576149 CHMLP26374 656 aa12.34□□□□□ -0.43
VPS53-220ENST00000576149 FGD1P98174 961 aa12.34□□□□□ -0.43
VPS53-220ENST00000576149 GZF1Q9H116 711 aaPredicted RBP12.34□□□□□ -0.43
VPS53-220ENST00000576149 ZBTB22O15209 634 aa12.33□□□□□ -0.43
VPS53-220ENST00000576149 SRGAP3O43295 1099 aa12.33□□□□□ -0.43
VPS53-220ENST00000576149 PTMSP20962 102 aa12.33□□□□□ -0.43
VPS53-220ENST00000576149 ERBB3P21860 1342 aa12.33□□□□□ -0.43
VPS53-220ENST00000576149 IL1RAPL2Q9NP60 686 aa12.33□□□□□ -0.43
VPS53-220ENST00000576149 TRIM6-TRIM34B2RNG4 842 aa12.33□□□□□ -0.44
VPS53-220ENST00000576149 RHPN1Q8TCX5 695 aa12.33□□□□□ -0.44
VPS53-220ENST00000576149 RILPL2Q969X0 211 aa12.33□□□□□ -0.44
VPS53-220ENST00000576149 GOLGA6L3A6NEY3 463 aa12.32□□□□□ -0.44
VPS53-220ENST00000576149 SSFA2P28290 1259 aa12.32□□□□□ -0.44
VPS53-220ENST00000576149 KIF1BPQ96EK5 621 aa12.32□□□□□ -0.44
VPS53-220ENST00000576149 ADAMTS7Q9UKP4 1686 aa12.32□□□□□ -0.44
VPS53-220ENST00000576149 SKOR2Q2VWA4 1001 aaPredicted RBP12.32□□□□□ -0.44
VPS53-220ENST00000576149 UNC5CLQ8IV45 518 aa12.32□□□□□ -0.44
VPS53-220ENST00000576149 ALS2Q96Q42 1657 aa12.32□□□□□ -0.44
VPS53-220ENST00000576149 ALDH1L1O75891 902 aa12.31□□□□□ -0.44
VPS53-220ENST00000576149 CDK11BP21127 795 aaKnown RBP12.31□□□□□ -0.44
VPS53-220ENST00000576149 MTX1Q13505 466 aa12.31□□□□□ -0.44
VPS53-220ENST00000576149 PROSER3Q2NL68 480 aa12.31□□□□□ -0.44
VPS53-220ENST00000576149 KSR2Q6VAB6 950 aa12.31□□□□□ -0.44
VPS53-220ENST00000576149 NUTM1Q86Y26 1132 aa12.31□□□□□ -0.44
VPS53-220ENST00000576149 CWC22Q9HCG8 908 aaKnown RBP12.31□□□□□ -0.44
VPS53-220ENST00000576149 MAP3K2Q9Y2U5 619 aa12.31□□□□□ -0.44
VPS53-220ENST00000576149 SIPA1L3O60292 1781 aaPredicted RBP12.31□□□□□ -0.44
VPS53-220ENST00000576149 ZC3H6P61129 1189 aaKnown RBP12.31□□□□□ -0.44
VPS53-220ENST00000576149 NUCB2P80303 420 aa12.31□□□□□ -0.44
VPS53-220ENST00000576149 HSP90AB4PQ58FF6 505 aa12.31□□□□□ -0.44
VPS53-220ENST00000576149 PI4K2BQ8TCG2 481 aa12.31□□□□□ -0.44
VPS53-220ENST00000576149 PRAMEF22A3QJZ6 481 aa12.3□□□□□ -0.44
VPS53-220ENST00000576149 IGSF3O75054 1194 aa12.3□□□□□ -0.44
VPS53-220ENST00000576149 CYP2E1P05181 493 aaPredicted RBP12.3□□□□□ -0.44
VPS53-220ENST00000576149 MCCP23508 829 aa12.3□□□□□ -0.44
VPS53-220ENST00000576149 ANAPC15P60006 121 aa12.3□□□□□ -0.44
VPS53-220ENST00000576149 HYPKQ9NX55 129 aa12.3□□□□□ -0.44
VPS53-220ENST00000576149 EPB41L2O43491 1005 aaKnown RBP12.3□□□□□ -0.44
VPS53-220ENST00000576149 IL17RAQ96F46 866 aa12.3□□□□□ -0.44
VPS53-220ENST00000576149 RGPD5Q99666 1765 aa12.29□□□□□ -0.44
VPS53-220ENST00000576149 BAG4O95429 457 aaKnown RBP12.29□□□□□ -0.44
VPS53-220ENST00000576149 XRCC6P12956 609 aaKnown RBP eCLIP12.29□□□□□ -0.44
VPS53-220ENST00000576149 ATF3P18847 181 aa12.29□□□□□ -0.44
VPS53-220ENST00000576149 RAPGEF4Q8WZA2 1011 aa12.29□□□□□ -0.44
VPS53-220ENST00000576149 ANO2Q9NQ90 1003 aa12.29□□□□□ -0.44
VPS53-220ENST00000576149 NEK4P51957 841 aa12.29□□□□□ -0.44
VPS53-220ENST00000576149 DDX21Q9NR30 783 aaKnown RBP eCLIP12.29□□□□□ -0.44
VPS53-220ENST00000576149 C9orf78Q9NZ63 289 aaPredicted RBP12.29□□□□□ -0.44
VPS53-220ENST00000576149 ISY1Q9ULR0 285 aaKnown RBP12.29□□□□□ -0.44
VPS53-220ENST00000576149 USP42Q9H9J4 1324 aaKnown RBP12.28□□□□□ -0.44
VPS53-220ENST00000576149 GOLGA6L22H0YM25 854 aa12.28□□□□□ -0.44
VPS53-220ENST00000576149 MCM2P49736 904 aa12.28□□□□□ -0.44
VPS53-220ENST00000576149 ZGPATQ8N5A5 531 aaKnown RBP12.28□□□□□ -0.44
VPS53-220ENST00000576149 PALD1Q9ULE6 856 aa12.28□□□□□ -0.44
VPS53-220ENST00000576149 HDAC5Q9UQL6 1122 aa12.28□□□□□ -0.44
VPS53-220ENST00000576149 TMEM94Q12767 1356 aa12.28□□□□□ -0.44
VPS53-220ENST00000576149 NPHP3Q7Z494 1330 aa12.28□□□□□ -0.44
VPS53-220ENST00000576149 DCCP43146 1447 aa12.28□□□□□ -0.44
VPS53-220ENST00000576149 PDIA6Q15084 440 aa12.28□□□□□ -0.44
VPS53-220ENST00000576149 SLC52A2Q9HAB3 445 aa12.28□□□□□ -0.44
VPS53-220ENST00000576149 NLRP2Q9NX02 1062 aa12.28□□□□□ -0.44
VPS53-220ENST00000576149 CWF19L2Q2TBE0 894 aaKnown RBP12.27□□□□□ -0.44
VPS53-220ENST00000576149 ZNF790Q6PG37 636 aa12.27□□□□□ -0.44
VPS53-220ENST00000576149 LINS1Q8NG48 757 aa12.27□□□□□ -0.44
VPS53-220ENST00000576149 IL25Q9H293 177 aa12.27□□□□□ -0.44
VPS53-220ENST00000576149 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.27□□□□□ -0.442e-6■■■□□ 15
VPS53-220ENST00000576149 UTYO14607 1347 aa12.27□□□□□ -0.45
VPS53-220ENST00000576149 KDM6AO15550 1401 aaPredicted RBP12.27□□□□□ -0.45
VPS53-220ENST00000576149 DDX58O95786 925 aaKnown RBP12.27□□□□□ -0.45
VPS53-220ENST00000576149 PHKG2P15735 406 aa12.27□□□□□ -0.45
VPS53-220ENST00000576149 TATP17735 454 aaPredicted RBP12.27□□□□□ -0.45
VPS53-220ENST00000576149 MRE11P49959 708 aa12.27□□□□□ -0.45
VPS53-220ENST00000576149 DDX17Q92841 729 aaKnown RBP12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms