RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 ADGBQ8N7X0 1667 aa8.39□□□□□ -1.07
VPS53-219ENST00000576019 ATP7AQ04656 1500 aa8.39□□□□□ -1.07
VPS53-219ENST00000576019 TMEM94Q12767 1356 aa8.38□□□□□ -1.07
VPS53-219ENST00000576019 C21orf2O43822 256 aa8.38□□□□□ -1.07
VPS53-219ENST00000576019 HDLBPQ00341 1268 aaKnown RBP8.38□□□□□ -1.07
VPS53-219ENST00000576019 OCLNQ16625 522 aa8.38□□□□□ -1.07
VPS53-219ENST00000576019 EAPPQ56P03 285 aaPredicted RBP8.38□□□□□ -1.07
VPS53-219ENST00000576019 DESI1Q6ICB0 168 aa8.38□□□□□ -1.07
VPS53-219ENST00000576019 GIMAP6Q6P9H5 292 aa8.38□□□□□ -1.07
VPS53-219ENST00000576019 TAS1R3Q7RTX0 852 aa8.38□□□□□ -1.07
VPS53-219ENST00000576019 ZSCAN29Q8IWY8 852 aaPredicted RBP8.38□□□□□ -1.07
VPS53-219ENST00000576019 KIAA1468Q9P260 1216 aa8.38□□□□□ -1.07
VPS53-219ENST00000576019 MAP10Q9P2G4 905 aa8.38□□□□□ -1.07
VPS53-219ENST00000576019 KIAA1024Q9UPX6 916 aa8.38□□□□□ -1.07
VPS53-219ENST00000576019 PCDHB9Q9Y5E1 797 aa8.38□□□□□ -1.07
VPS53-219ENST00000576019 UNC13BO14795 1591 aa8.38□□□□□ -1.07
VPS53-219ENST00000576019 MLH3Q9UHC1 1453 aa8.38□□□□□ -1.07
VPS53-219ENST00000576019 LGR5O75473 907 aa8.37□□□□□ -1.07
VPS53-219ENST00000576019 HSPA6P17066 643 aa8.37□□□□□ -1.07
VPS53-219ENST00000576019 NCLP19338 710 aaKnown RBP8.37□□□□□ -1.07
VPS53-219ENST00000576019 MTMR3Q13615 1198 aa8.37□□□□□ -1.07
VPS53-219ENST00000576019 R3HDM1Q15032 1099 aaKnown RBP8.37□□□□□ -1.07
VPS53-219ENST00000576019 POTEEQ6S8J3 1075 aa8.37□□□□□ -1.07
VPS53-219ENST00000576019 PHTF2Q8N3S3 785 aa8.37□□□□□ -1.07
VPS53-219ENST00000576019 GTF3C2Q8WUA4 911 aaPredicted RBP8.37□□□□□ -1.07
VPS53-219ENST00000576019 POLR3GLQ9BT43 218 aa8.37□□□□□ -1.07
VPS53-219ENST00000576019 MKNK1Q9BUB5 465 aa8.37□□□□□ -1.07
VPS53-219ENST00000576019 GOLGA3Q08378 1498 aa8.37□□□□□ -1.07
VPS53-219ENST00000576019 ANKRD62A6NC57 917 aa8.36□□□□□ -1.07
VPS53-219ENST00000576019 LZTS3O60299 673 aaPredicted RBP8.36□□□□□ -1.07
VPS53-219ENST00000576019 TRIM50Q86XT4 487 aa8.36□□□□□ -1.07
VPS53-219ENST00000576019 SEPT3Q9UH03 358 aa8.36□□□□□ -1.07
VPS53-219ENST00000576019 SEPT9Q9UHD8 586 aaPredicted RBP8.36□□□□□ -1.07
VPS53-219ENST00000576019 DNMT3AQ9Y6K1 912 aaPredicted RBP8.36□□□□□ -1.07
VPS53-219ENST00000576019 ZC3H4Q9UPT8 1303 aaKnown RBP8.35□□□□□ -1.07
VPS53-219ENST00000576019 ATP1A2P50993 1020 aa8.35□□□□□ -1.07
VPS53-219ENST00000576019 ARHGAP4P98171 946 aa8.35□□□□□ -1.07
VPS53-219ENST00000576019 SF3B2Q13435 895 aaKnown RBP8.35□□□□□ -1.07
VPS53-219ENST00000576019 ECM1Q16610 540 aa8.35□□□□□ -1.07
VPS53-219ENST00000576019 DPH6Q7L8W6 267 aa8.35□□□□□ -1.07
VPS53-219ENST00000576019 ANKRD13AQ8IZ07 590 aa8.35□□□□□ -1.07
VPS53-219ENST00000576019 TIAM1Q13009 1591 aa8.35□□□□□ -1.07
VPS53-219ENST00000576019 ARHGAP33O14559 1287 aa8.34□□□□□ -1.07
VPS53-219ENST00000576019 SCAMP3O14828 347 aaKnown RBP8.34□□□□□ -1.07
VPS53-219ENST00000576019 RNF40O75150 1001 aa8.34□□□□□ -1.07
VPS53-219ENST00000576019 DKK1O94907 266 aa8.34□□□□□ -1.07
VPS53-219ENST00000576019 F12P00748 615 aaPredicted RBP8.34□□□□□ -1.07
VPS53-219ENST00000576019 SLC4A3P48751 1232 aa8.34□□□□□ -1.07
VPS53-219ENST00000576019 LSM11P83369 360 aaKnown RBP eCLIP8.34□□□□□ -1.07
VPS53-219ENST00000576019 MRPL58Q14197 206 aaKnown RBP8.34□□□□□ -1.07
VPS53-219ENST00000576019 PUS10Q3MIT2 529 aaKnown RBP8.34□□□□□ -1.07
VPS53-219ENST00000576019 TSGA10IPQ3SY00 556 aa8.34□□□□□ -1.07
VPS53-219ENST00000576019 TRAF7Q6Q0C0 670 aa8.34□□□□□ -1.07
VPS53-219ENST00000576019 SIX5Q8N196 739 aa8.34□□□□□ -1.07
VPS53-219ENST00000576019 THEMISQ8N1K5 641 aaPredicted RBP8.34□□□□□ -1.07
VPS53-219ENST00000576019 LARGE2Q8N3Y3 721 aa8.34□□□□□ -1.07
VPS53-219ENST00000576019 PIK3R5Q8WYR1 880 aa8.34□□□□□ -1.07
VPS53-219ENST00000576019 KCNK17Q96T54 332 aa8.34□□□□□ -1.07
VPS53-219ENST00000576019 CWC22Q9HCG8 908 aaKnown RBP8.34□□□□□ -1.07
VPS53-219ENST00000576019 NOD1Q9Y239 953 aa8.34□□□□□ -1.07
VPS53-219ENST00000576019 ARHGAP23Q9P227 1491 aa8.33□□□□□ -1.08
VPS53-219ENST00000576019 SFI1A8K8P3 1242 aa8.33□□□□□ -1.08
VPS53-219ENST00000576019 ATRNO75882 1429 aa8.33□□□□□ -1.08
VPS53-219ENST00000576019 P4HBP07237 508 aaKnown RBP8.33□□□□□ -1.08
VPS53-219ENST00000576019 SEC13P55735 322 aa8.33□□□□□ -1.08
VPS53-219ENST00000576019 MAP7D1Q3KQU3 841 aa8.33□□□□□ -1.08
VPS53-219ENST00000576019 KIF27Q86VH2 1401 aa8.33□□□□□ -1.08
VPS53-219ENST00000576019 SPNS2Q8IVW8 549 aa8.33□□□□□ -1.08
VPS53-219ENST00000576019 RGL4Q8IZJ4 473 aa8.33□□□□□ -1.08
VPS53-219ENST00000576019 AFAP1Q8N556 730 aa8.33□□□□□ -1.08
VPS53-219ENST00000576019 DNAJC2Q99543 621 aaKnown RBP8.33□□□□□ -1.08
VPS53-219ENST00000576019 HIRIP3Q9BW71 556 aaPredicted RBP8.33□□□□□ -1.08
VPS53-219ENST00000576019 TANGO6Q9C0B7 1094 aa8.33□□□□□ -1.08
VPS53-219ENST00000576019 SLC27A5Q9Y2P5 690 aa8.33□□□□□ -1.08
VPS53-219ENST00000576019 ABCC3O15438 1527 aa8.33□□□□□ -1.08
VPS53-219ENST00000576019 FAM135AQ9P2D6 1515 aa8.33□□□□□ -1.08
VPS53-219ENST00000576019 RALGAPBQ86X10 1494 aa8.32□□□□□ -1.08
VPS53-219ENST00000576019 SPHKAPQ2M3C7 1700 aa8.32□□□□□ -1.08
VPS53-219ENST00000576019 UGGT1Q9NYU2 1555 aa8.32□□□□□ -1.08
VPS53-219ENST00000576019 FMNL1O95466 1100 aaPredicted RBP8.32□□□□□ -1.08
VPS53-219ENST00000576019 HDGFP51858 240 aaKnown RBP8.32□□□□□ -1.08
VPS53-219ENST00000576019 RAD51AP2Q09MP3 1159 aa8.32□□□□□ -1.08
VPS53-219ENST00000576019 COL19A1Q14993 1142 aa8.32□□□□□ -1.08
VPS53-219ENST00000576019 MORN1Q5T089 497 aa8.32□□□□□ -1.08
VPS53-219ENST00000576019 RNF19BQ6ZMZ0 732 aa8.32□□□□□ -1.08
VPS53-219ENST00000576019 OCSTAMPQ9BR26 566 aa8.32□□□□□ -1.08
VPS53-219ENST00000576019 CHIC2Q9UKJ5 165 aa8.32□□□□□ -1.08
VPS53-219ENST00000576019 TRPC5Q9UL62 973 aaPredicted RBP8.32□□□□□ -1.08
VPS53-219ENST00000576019 RBM19Q9Y4C8 960 aaKnown RBP8.32□□□□□ -1.08
VPS53-219ENST00000576019 ZBTB7BO15156 539 aaPredicted RBP8.31□□□□□ -1.08
VPS53-219ENST00000576019 CTHP32929 405 aa8.31□□□□□ -1.08
VPS53-219ENST00000576019 GTF2IP78347 998 aa8.31□□□□□ -1.08
VPS53-219ENST00000576019 FKBP4Q02790 459 aaKnown RBP eCLIP8.31□□□□□ -1.08
VPS53-219ENST00000576019 Q3C1V9 767 aa8.31□□□□□ -1.08
VPS53-219ENST00000576019 OXLD1Q5BKU9 147 aa8.31□□□□□ -1.08
VPS53-219ENST00000576019 CAPN12Q6ZSI9 719 aa8.31□□□□□ -1.08
VPS53-219ENST00000576019 TPCN2Q8NHX9 752 aa8.31□□□□□ -1.08
VPS53-219ENST00000576019 ZNF592Q92610 1267 aa8.31□□□□□ -1.08
VPS53-219ENST00000576019 AXIN2Q9Y2T1 843 aa8.31□□□□□ -1.08
VPS53-219ENST00000576019 TNRQ92752 1358 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms