RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 GPR101Q96P66 508 aaPredicted RBP23.2■■□□□ 1.3
VPS53-218ENST00000575207 TERF2IPQ9NYB0 399 aa23.2■■□□□ 1.3
VPS53-218ENST00000575207 ABT1Q9ULW3 272 aaKnown RBP23.2■■□□□ 1.3
VPS53-218ENST00000575207 ECE1P42892 770 aa23.19■■□□□ 1.3
VPS53-218ENST00000575207 CA12O43570 354 aa23.18■■□□□ 1.3
VPS53-218ENST00000575207 CASP8AP2Q9UKL3 1982 aa23.18■■□□□ 1.3
VPS53-218ENST00000575207 LTBP1Q14766 1721 aa23.17■■□□□ 1.3
VPS53-218ENST00000575207 LTBP3Q9NS15 1303 aa23.17■■□□□ 1.3
VPS53-218ENST00000575207 SPG7Q9UQ90 795 aa23.17■■□□□ 1.3
VPS53-218ENST00000575207 RRS1Q15050 365 aaKnown RBP23.16■■□□□ 1.3
VPS53-218ENST00000575207 CNTROBQ8N137 903 aa23.16■■□□□ 1.3
VPS53-218ENST00000575207 RBM42Q9BTD8 480 aaKnown RBP23.16■■□□□ 1.3
VPS53-218ENST00000575207 ADAMTSL1Q8N6G6 1762 aa23.16■■□□□ 1.3
VPS53-218ENST00000575207 INSRP06213 1382 aa23.15■■□□□ 1.3
VPS53-218ENST00000575207 FER1L6Q2WGJ9 1857 aa23.14■■□□□ 1.29
VPS53-218ENST00000575207 MAP2K2P36507 400 aa23.14■■□□□ 1.29
VPS53-218ENST00000575207 SOX10P56693 466 aa23.14■■□□□ 1.29
VPS53-218ENST00000575207 EAPPQ56P03 285 aaPredicted RBP23.14■■□□□ 1.29
VPS53-218ENST00000575207 GCC1Q96CN9 775 aa23.14■■□□□ 1.29
VPS53-218ENST00000575207 HSP90AB2PQ58FF8 381 aa23.13■■□□□ 1.29
VPS53-218ENST00000575207 C2CD5Q86YS7 1000 aa23.13■■□□□ 1.29
VPS53-218ENST00000575207 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.13■■□□□ 1.292e-10■■□□□ 12.8
VPS53-218ENST00000575207 CLEC11AQ9Y240 323 aa23.13■■□□□ 1.29
VPS53-218ENST00000575207 H0YIN7 160 aa23.12■■□□□ 1.29
VPS53-218ENST00000575207 MAP1SQ66K74 1059 aaPredicted RBP23.12■■□□□ 1.29
VPS53-218ENST00000575207 CYP4F22Q6NT55 531 aa23.12■■□□□ 1.29
VPS53-218ENST00000575207 NRXN2Q9P2S2 1712 aa23.11■■□□□ 1.29
VPS53-218ENST00000575207 TAOK3Q9H2K8 898 aa23.11■■□□□ 1.29
VPS53-218ENST00000575207 DDX21Q9NR30 783 aaKnown RBP eCLIP23.11■■□□□ 1.29
VPS53-218ENST00000575207 NCAPD2Q15021 1401 aa23.1■■□□□ 1.29
VPS53-218ENST00000575207 PHKG2P15735 406 aa23.1■■□□□ 1.29
VPS53-218ENST00000575207 CRKLP46109 303 aaKnown RBP23.1■■□□□ 1.29
VPS53-218ENST00000575207 PNMA8AQ86V59 439 aaPredicted RBP23.1■■□□□ 1.29
VPS53-218ENST00000575207 IFNL2Q8IZJ0 200 aa23.1■■□□□ 1.29
VPS53-218ENST00000575207 ZNF219Q9P2Y4 722 aaPredicted RBP23.1■■□□□ 1.29
VPS53-218ENST00000575207 AFDNP55196 1824 aaKnown RBP23.1■■□□□ 1.29
VPS53-218ENST00000575207 C21orf2O43822 256 aa23.09■■□□□ 1.29
VPS53-218ENST00000575207 PAXIP1Q6ZW49 1069 aaPredicted RBP23.09■■□□□ 1.29
VPS53-218ENST00000575207 HACL1Q9UJ83 578 aa23.09■■□□□ 1.29
VPS53-218ENST00000575207 EPHX2P34913 555 aa23.08■■□□□ 1.29
VPS53-218ENST00000575207 NFIXQ14938 502 aa23.08■■□□□ 1.29
VPS53-218ENST00000575207 ADAMTS7Q9UKP4 1686 aa23.07■■□□□ 1.28
VPS53-218ENST00000575207 GRM1Q13255 1194 aa23.06■■□□□ 1.28
VPS53-218ENST00000575207 USPL1Q5W0Q7 1092 aa23.06■■□□□ 1.28
VPS53-218ENST00000575207 FLT4P35916 1363 aa23.05■■□□□ 1.28
VPS53-218ENST00000575207 KIF24Q5T7B8 1368 aa23.05■■□□□ 1.28
VPS53-218ENST00000575207 AOC2O75106 756 aa23.05■■□□□ 1.28
VPS53-218ENST00000575207 ZPR1O75312 459 aa23.05■■□□□ 1.28
VPS53-218ENST00000575207 SERPINB2P05120 415 aa23.05■■□□□ 1.28
VPS53-218ENST00000575207 TONSLQ96HA7 1378 aa23.04■■□□□ 1.28
VPS53-218ENST00000575207 ERVV-2B6SEH9 535 aa23.04■■□□□ 1.28
VPS53-218ENST00000575207 HABP4Q5JVS0 413 aaKnown RBP23.04■■□□□ 1.28
VPS53-218ENST00000575207 ROCK2O75116 1388 aaKnown RBP23.02■■□□□ 1.28
VPS53-218ENST00000575207 CARMIL3Q8ND23 1372 aa23.02■■□□□ 1.28
VPS53-218ENST00000575207 BRPF1P55201 1214 aaPredicted RBP23.02■■□□□ 1.28
VPS53-218ENST00000575207 PUS7Q96PZ0 661 aaKnown RBP23.02■■□□□ 1.28
VPS53-218ENST00000575207 PDZRN3Q9UPQ7 1066 aa23.02■■□□□ 1.28
VPS53-218ENST00000575207 TLL2Q9Y6L7 1015 aa23.02■■□□□ 1.28
VPS53-218ENST00000575207 CST9Q5W186 159 aa23■■□□□ 1.27
VPS53-218ENST00000575207 INTS5Q6P9B9 1019 aaKnown RBP23■■□□□ 1.27
VPS53-218ENST00000575207 ZNF622Q969S3 477 aaKnown RBP eCLIP23■■□□□ 1.271e-8■■■□□ 18.7
VPS53-218ENST00000575207 NBPF15Q8N660 670 aa22.98■■□□□ 1.27
VPS53-218ENST00000575207 ZNF541Q9H0D2 1346 aa22.98■■□□□ 1.27
VPS53-218ENST00000575207 FMR1Q06787 632 aaKnown RBP eCLIP22.97■■□□□ 1.274e-8■■■■■ 46.3
VPS53-218ENST00000575207 NARFQ9UHQ1 456 aa22.97■■□□□ 1.27
VPS53-218ENST00000575207 PTCD1O75127 700 aaKnown RBP22.96■■□□□ 1.27
VPS53-218ENST00000575207 SOGA3Q5TF21 947 aa22.96■■□□□ 1.27
VPS53-218ENST00000575207 RNF123Q5XPI4 1314 aa22.96■■□□□ 1.27
VPS53-218ENST00000575207 BCL2L12Q9HB09 334 aa22.95■■□□□ 1.26
VPS53-218ENST00000575207 SOS1Q07889 1333 aaPredicted RBP22.94■■□□□ 1.26
VPS53-218ENST00000575207 FYB1O15117 783 aa22.94■■□□□ 1.26
VPS53-218ENST00000575207 PDE6BP35913 854 aa22.94■■□□□ 1.26
VPS53-218ENST00000575207 HHIPL1Q96JK4 782 aa22.94■■□□□ 1.26
VPS53-218ENST00000575207 BRIP1Q9BX63 1249 aa22.94■■□□□ 1.26
VPS53-218ENST00000575207 SAPCD2Q86UD0 394 aa22.93■■□□□ 1.26
VPS53-218ENST00000575207 L3MBTL2Q969R5 705 aa22.92■■□□□ 1.26
VPS53-218ENST00000575207 GGNBP2Q9H3C7 697 aa22.92■■□□□ 1.26
VPS53-218ENST00000575207 TRPM7Q96QT4 1865 aa22.92■■□□□ 1.26
VPS53-218ENST00000575207 CIAPIN1Q6FI81 312 aa22.91■■□□□ 1.26
VPS53-218ENST00000575207 CNKSR1Q969H4 720 aa22.91■■□□□ 1.26
VPS53-218ENST00000575207 ANKRD31Q8N7Z5 1873 aa22.91■■□□□ 1.26
VPS53-218ENST00000575207 TJP1Q07157 1748 aa22.91■■□□□ 1.26
VPS53-218ENST00000575207 HSP90AB1P08238 724 aaKnown RBP22.9■■□□□ 1.26
VPS53-218ENST00000575207 FXR1P51114 621 aaKnown RBP eCLIP22.9■■□□□ 1.26
VPS53-218ENST00000575207 EYA1Q99502 592 aa22.9■■□□□ 1.26
VPS53-218ENST00000575207 SLX4Q8IY92 1834 aa22.89■■□□□ 1.26
VPS53-218ENST00000575207 A0A0C4DFX4 3053 aa22.89■■□□□ 1.26
VPS53-218ENST00000575207 GPC2Q8N158 579 aa22.89■■□□□ 1.25
VPS53-218ENST00000575207 FZD9O00144 591 aa22.88■■□□□ 1.25
VPS53-218ENST00000575207 CABP4P57796 275 aa22.88■■□□□ 1.25
VPS53-218ENST00000575207 PRPF40BQ6NWY9 871 aaKnown RBP22.88■■□□□ 1.25
VPS53-218ENST00000575207 COL11A2P13942 1736 aaPredicted RBP22.88■■□□□ 1.25
VPS53-218ENST00000575207 TRAF5O00463 557 aa22.87■■□□□ 1.25
VPS53-218ENST00000575207 DLL1O00548 723 aa22.87■■□□□ 1.25
VPS53-218ENST00000575207 C7orf43Q8WVR3 580 aa22.87■■□□□ 1.25
VPS53-218ENST00000575207 MKI67P46013 3256 aaKnown RBP22.87■■□□□ 1.25
VPS53-218ENST00000575207 STYK1Q6J9G0 422 aa22.86■■□□□ 1.25
VPS53-218ENST00000575207 COL15A1P39059 1388 aa22.86■■□□□ 1.25
VPS53-218ENST00000575207 FKBP4Q02790 459 aaKnown RBP eCLIP22.84■■□□□ 1.25
VPS53-218ENST00000575207 EMILIN1Q9Y6C2 1016 aa22.84■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms